Wall clock time and date at job start Mon Mar 30 2020 06:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 110.73378 * 2 1 4 4 C 1.54348 * 110.82114 * 123.62111 * 2 1 3 5 5 C 1.51375 * 105.16991 * 91.86966 * 4 2 1 6 6 C 1.38458 * 130.36798 * 197.15533 * 5 4 2 7 7 C 1.38328 * 120.19740 * 179.73242 * 6 5 4 8 8 F 1.35097 * 120.06221 * 180.29193 * 7 6 5 9 9 C 1.38482 * 119.87700 * 0.58672 * 7 6 5 10 10 C 1.38054 * 119.90497 * 359.42684 * 9 7 6 11 11 C 1.38234 * 109.75901 * 17.19164 * 5 4 2 12 12 C 1.51387 * 109.74863 * 0.02562 * 11 5 4 13 13 C 1.50699 * 110.30093 * 223.87863 * 12 11 5 14 14 H 1.08005 * 120.00255 * 1.82076 * 13 12 11 15 15 C 1.37876 * 120.00007 * 181.81585 * 13 12 11 16 16 N 1.31511 * 119.99904 * 352.31268 * 15 13 12 17 17 Si 1.86800 * 119.99867 * 172.31074 * 15 13 12 18 18 H 1.48506 * 109.47159 * 90.00387 * 17 15 13 19 19 H 1.48507 * 109.47202 * 210.00336 * 17 15 13 20 20 H 1.48502 * 109.47254 * 330.00385 * 17 15 13 21 21 C 1.53000 * 110.30173 * 101.73195 * 12 11 5 22 22 N 1.46897 * 109.47259 * 65.26377 * 21 12 11 23 23 H 1.09002 * 109.47338 * 176.82336 * 1 2 3 24 24 H 1.09008 * 109.47217 * 296.82909 * 1 2 3 25 25 H 1.09000 * 109.47247 * 56.82246 * 1 2 3 26 26 H 1.08995 * 110.30055 * 210.79377 * 4 2 1 27 27 H 1.09002 * 110.30238 * 332.84609 * 4 2 1 28 28 H 1.07999 * 119.90148 * 0.04331 * 6 5 4 29 29 H 1.07997 * 120.04383 * 179.70461 * 9 7 6 30 30 H 1.08001 * 119.87398 * 180.25331 * 10 9 7 31 31 H 0.97000 * 119.99964 * 179.97438 * 16 15 13 32 32 H 1.09002 * 109.46817 * 185.26748 * 21 12 11 33 33 H 1.08999 * 109.46841 * 305.26082 * 21 12 11 34 34 H 1.00903 * 111.00012 * 180.02562 * 22 21 12 35 35 H 1.00898 * 111.00394 * 303.95058 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9158 1.0194 0.0000 4 6 2.0786 -0.7988 1.2013 5 6 2.2639 -2.2104 0.6870 6 6 2.4208 -3.4020 1.3745 7 6 2.5711 -4.5901 0.6822 8 9 2.7181 -5.7519 1.3557 9 6 2.5767 -4.5856 -0.7026 10 6 2.4205 -3.3972 -1.3877 11 6 2.2639 -2.2079 -0.6953 12 6 2.0792 -0.7941 -1.2043 13 6 1.0886 -0.7725 -2.3397 14 1 0.6058 -1.6865 -2.6527 15 6 0.7985 0.4142 -2.9790 16 7 1.2669 1.5480 -2.5050 17 14 -0.2597 0.4114 -4.5184 18 1 -1.6879 0.5551 -4.1376 19 1 0.1359 1.5445 -5.3930 20 1 -0.0683 -0.8676 -5.2483 21 6 3.4203 -0.2135 -1.6572 22 7 3.9132 -0.9670 -2.8179 23 1 -0.3634 -1.0261 -0.0569 24 1 -0.3634 0.4638 0.9171 25 1 -0.3634 0.5624 -0.8601 26 1 3.0338 -0.3859 1.5255 27 1 1.3628 -0.7851 2.0233 28 1 2.4208 -3.4045 2.4545 29 1 2.6987 -5.5110 -1.2458 30 1 2.4209 -3.3948 -2.4677 31 1 1.0631 2.3828 -2.9550 32 1 3.2887 0.8330 -1.9325 33 1 4.1415 -0.2871 -0.8432 34 1 4.7988 -0.6027 -3.1359 35 1 3.9822 -1.9513 -2.6072 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260778265.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:03 Heat of formation + Delta-G solvation = -37.333571 kcal Electronic energy + Delta-G solvation = -18885.637560 eV Core-core repulsion = 15989.848341 eV Total energy + Delta-G solvation = -2895.789219 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.78910 -41.29696 -37.54690 -34.89364 -33.88479 -31.90338 -30.75627 -28.95383 -27.36190 -26.02745 -23.74933 -22.94860 -21.44328 -20.58302 -18.17812 -17.69811 -17.20820 -16.74175 -16.51889 -16.17023 -15.75851 -15.50808 -15.21706 -14.38357 -14.33736 -14.05161 -13.81881 -13.59009 -13.41906 -13.25071 -12.91500 -12.71873 -12.51948 -12.15369 -11.89909 -11.68582 -11.48679 -11.17824 -10.98888 -10.69702 -10.13771 -9.73812 -9.23900 -9.00084 -7.87467 -5.87417 0.38451 0.41237 1.45839 1.51360 1.57742 2.58008 2.79825 3.28416 3.44279 3.78385 3.98618 4.10902 4.13563 4.43532 4.49600 4.54380 4.59815 4.79215 4.85453 4.92573 5.09737 5.11878 5.16888 5.25591 5.28173 5.44159 5.45422 5.67348 5.73830 5.87049 5.92670 6.07494 6.10462 6.19629 6.49124 6.78594 6.96761 7.08467 7.73176 9.16799 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.026841 B = 0.008281 C = 0.007750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.946601 B = 3380.232768 C = 3612.177004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.063 4.063 3 H 0.060 0.940 4 C -0.078 4.078 5 C -0.088 4.088 6 C -0.146 4.146 7 C 0.068 3.932 8 F -0.147 7.147 9 C -0.154 4.154 10 C -0.089 4.089 11 C -0.075 4.075 12 C 0.106 3.894 13 C -0.467 4.467 14 H 0.035 0.965 15 C 0.046 3.954 16 N -0.900 5.900 17 Si 0.921 3.079 18 H -0.287 1.287 19 H -0.293 1.293 20 H -0.280 1.280 21 C 0.094 3.906 22 N -0.836 5.836 23 H 0.029 0.971 24 H 0.038 0.962 25 H 0.048 0.952 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.145 0.855 29 H 0.151 0.849 30 H 0.129 0.871 31 H 0.253 0.747 32 H 0.074 0.926 33 H -0.014 1.014 34 H 0.329 0.671 35 H 0.329 0.671 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.599 -6.489 6.000 9.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.082 4.082 3 H 0.078 0.922 4 C -0.115 4.115 5 C -0.088 4.088 6 C -0.165 4.165 7 C 0.049 3.951 8 F -0.126 7.126 9 C -0.173 4.173 10 C -0.107 4.107 11 C -0.075 4.075 12 C 0.106 3.894 13 C -0.505 4.505 14 H 0.054 0.946 15 C -0.153 4.153 16 N -0.539 5.539 17 Si 0.751 3.249 18 H -0.214 1.214 19 H -0.220 1.220 20 H -0.206 1.206 21 C -0.037 4.037 22 N -0.365 5.365 23 H 0.048 0.952 24 H 0.057 0.943 25 H 0.067 0.933 26 H 0.098 0.902 27 H 0.100 0.900 28 H 0.163 0.837 29 H 0.169 0.831 30 H 0.147 0.853 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.004 0.996 34 H 0.141 0.859 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.935 -6.080 5.612 8.779 hybrid contribution 0.191 -0.232 -0.435 0.529 sum 3.126 -6.312 5.178 8.742 Atomic orbital electron populations 1.21351 0.95543 0.99453 0.99465 1.21606 0.95638 0.97885 0.93102 0.92178 1.21268 1.01396 0.89997 0.98827 1.20708 0.98379 0.95195 0.94522 1.20627 1.04606 0.90203 1.01055 1.17508 1.05878 0.81290 0.90416 1.91439 1.93713 1.46852 1.80622 1.21169 1.04170 0.99729 0.92183 1.20655 0.98879 0.90665 1.00494 1.21300 0.95360 0.96821 0.94010 1.17870 0.92724 0.85749 0.93083 1.20673 1.22052 0.92720 1.15104 0.94623 1.25043 0.96729 0.95661 0.97835 1.69939 1.46756 0.97402 1.39843 0.86153 0.79292 0.76884 0.82591 1.21406 1.21976 1.20573 1.21582 0.93842 0.99415 0.88860 1.58563 1.33149 1.06567 1.38214 0.95229 0.94287 0.93299 0.90157 0.89995 0.83743 0.83098 0.85306 0.93785 0.90765 0.99638 0.85917 0.85752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.23 8.10 71.98 0.58 -3.65 16 2 C -0.06 -2.60 2.26 -9.88 -0.02 -2.62 16 3 H 0.06 2.70 7.67 -2.39 -0.02 2.68 16 4 C -0.08 -2.65 6.30 30.52 0.19 -2.46 16 5 C -0.09 -3.10 6.14 -19.60 -0.12 -3.22 16 6 C -0.15 -4.58 10.02 22.34 0.22 -4.35 16 7 C 0.07 2.12 7.30 22.35 0.16 2.29 16 8 F -0.15 -4.41 17.27 44.97 0.78 -3.63 16 9 C -0.15 -4.73 10.03 22.28 0.22 -4.51 16 10 C -0.09 -3.14 8.31 22.29 0.19 -2.96 16 11 C -0.07 -2.91 4.53 -19.58 -0.09 -3.00 16 12 C 0.11 4.63 0.25 -53.00 -0.01 4.61 16 13 C -0.47 -23.10 5.99 25.60 0.15 -22.94 16 14 H 0.04 1.85 7.59 -2.91 -0.02 1.83 16 15 C 0.05 2.35 3.91 84.65 0.33 2.68 16 16 N -0.90 -46.64 10.09 21.45 0.22 -46.43 16 17 Si 0.92 42.79 29.54 68.60 2.03 44.82 16 18 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 19 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 20 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 21 C 0.09 4.05 5.39 86.30 0.46 4.51 16 22 N -0.84 -32.85 9.15 -186.72 -1.71 -34.56 16 23 H 0.03 1.24 8.09 -2.39 -0.02 1.22 16 24 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 25 H 0.05 2.32 5.92 -2.39 -0.01 2.30 16 26 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 27 H 0.08 2.47 7.91 -2.39 -0.02 2.45 16 28 H 0.14 3.77 8.06 -2.91 -0.02 3.75 16 29 H 0.15 3.78 8.06 -2.91 -0.02 3.76 16 30 H 0.13 4.59 7.61 -2.91 -0.02 4.57 16 31 H 0.25 12.98 8.31 -92.71 -0.77 12.21 16 32 H 0.07 3.65 6.25 -2.39 -0.01 3.63 16 33 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 34 H 0.33 11.30 9.08 -89.69 -0.81 10.48 16 35 H 0.33 11.99 6.62 -89.70 -0.59 11.40 16 Total: -1.00 -53.16 281.48 3.30 -49.86 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: -0.29 Total: 25.55 kcal Atomic # 6 Polarization: -37.89 SS G_CDS: 2.28 Total: -35.62 kcal Atomic # 7 Polarization: -79.49 SS G_CDS: -1.49 Total: -80.99 kcal Atomic # 9 Polarization: -4.41 SS G_CDS: 0.78 Total: -3.63 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -53.16 3.30 -49.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260778265.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.527 kcal (2) G-P(sol) polarization free energy of solvation -53.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds