Wall clock time and date at job start Mon Mar 30 2020 06:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09006 * 110.72556 * 2 1 4 4 C 1.54345 * 110.98967 * 123.51988 * 2 1 3 5 5 C 1.51381 * 105.16687 * 91.95290 * 4 2 1 6 6 C 1.38458 * 130.36694 * 197.19488 * 5 4 2 7 7 C 1.38326 * 120.19930 * 180.02562 * 6 5 4 8 8 F 1.35094 * 120.06103 * 180.02562 * 7 6 5 9 9 C 1.38475 * 119.87564 * 359.97438 * 7 6 5 10 10 C 1.38057 * 119.91290 * 359.97438 * 9 7 6 11 11 C 1.38381 * 120.30060 * 0.10014 * 10 9 7 12 12 C 1.51372 * 130.48073 * 180.11356 * 11 10 9 13 13 C 1.50707 * 110.29983 * 281.62386 * 12 11 10 14 14 H 1.07999 * 119.99794 * 247.33650 * 13 12 11 15 15 C 1.37879 * 119.99922 * 67.34609 * 13 12 11 16 16 N 1.31518 * 119.99811 * 358.09382 * 15 13 12 17 17 Si 1.86799 * 119.99863 * 178.10014 * 15 13 12 18 18 H 1.48493 * 109.47111 * 59.99683 * 17 15 13 19 19 H 1.48498 * 109.46781 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.46916 * 299.99479 * 17 15 13 21 21 C 1.52997 * 110.30371 * 43.67766 * 12 11 10 22 22 N 1.46897 * 109.47323 * 181.09081 * 21 12 11 23 23 H 1.09004 * 109.46520 * 183.40177 * 1 2 3 24 24 H 1.08989 * 109.47395 * 303.40438 * 1 2 3 25 25 H 1.08998 * 109.46710 * 63.41089 * 1 2 3 26 26 H 1.08996 * 110.30309 * 210.87334 * 4 2 1 27 27 H 1.08994 * 110.30500 * 333.03366 * 4 2 1 28 28 H 1.08008 * 119.90104 * 359.97438 * 6 5 4 29 29 H 1.08003 * 120.04361 * 180.02562 * 9 7 6 30 30 H 1.08003 * 119.87865 * 179.97438 * 10 9 7 31 31 H 0.97002 * 119.99766 * 180.02562 * 16 15 13 32 32 H 1.09003 * 109.47293 * 61.08584 * 21 12 11 33 33 H 1.09004 * 109.47235 * 301.08968 * 21 12 11 34 34 H 1.00900 * 111.00311 * 59.72463 * 22 21 12 35 35 H 1.00899 * 111.00224 * 183.67619 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9158 1.0195 0.0000 4 6 2.0829 -0.7958 1.2014 5 6 2.2713 -2.2075 0.6884 6 6 2.4319 -3.3979 1.3771 7 6 2.5905 -4.5856 0.6860 8 9 2.7464 -5.7455 1.3607 9 6 2.5880 -4.5835 -0.6988 10 6 2.4268 -3.3966 -1.3852 11 6 2.2695 -2.2071 -0.6957 12 6 2.0763 -0.7946 -1.2043 13 6 3.3931 -0.2164 -1.6548 14 1 3.8375 0.6035 -1.1101 15 6 4.0303 -0.7340 -2.7626 16 7 3.5079 -1.7566 -3.4038 17 14 5.6358 0.0170 -3.3524 18 1 6.6531 -0.0804 -2.2751 19 1 6.1140 -0.7164 -4.5519 20 1 5.4167 1.4442 -3.6989 21 6 1.0685 -0.7779 -2.3553 22 7 0.9146 0.5961 -2.8516 23 1 -0.3632 -1.0259 0.0610 24 1 -0.3633 0.5657 0.8578 25 1 -0.3633 0.4600 -0.9190 26 1 3.0376 -0.3799 1.5234 27 1 1.3678 -0.7846 2.0238 28 1 2.4342 -3.3990 2.4571 29 1 2.7112 -5.5093 -1.2411 30 1 2.4253 -3.3955 -2.4652 31 1 3.9564 -2.1210 -4.1829 32 1 0.1058 -1.1462 -2.0007 33 1 1.4274 -1.4174 -3.1618 34 1 1.7949 0.9619 -3.1822 35 1 0.2099 0.6435 -3.5722 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260778266.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:07 Heat of formation + Delta-G solvation = -36.613800 kcal Electronic energy + Delta-G solvation = -18957.217603 eV Core-core repulsion = 16061.459596 eV Total energy + Delta-G solvation = -2895.758008 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.73109 -41.16587 -37.54105 -35.04529 -33.64333 -31.72659 -30.84345 -28.86505 -27.58998 -25.72232 -23.75719 -22.98349 -21.73570 -19.83411 -18.31396 -17.73460 -17.19690 -16.52873 -16.47350 -16.41905 -15.76778 -15.47478 -14.99816 -14.52454 -14.37107 -14.01999 -13.62865 -13.53162 -13.31936 -13.06538 -12.84251 -12.62015 -12.31874 -12.21952 -12.02484 -11.72249 -11.53204 -11.31090 -10.83771 -10.76226 -10.43131 -9.57829 -9.15340 -8.90416 -7.93355 -6.09683 0.52515 0.60886 1.43444 1.47571 1.51190 2.45887 2.98401 3.23959 3.38739 3.89412 4.09026 4.16579 4.28271 4.49600 4.52111 4.58679 4.69968 4.91954 4.93297 5.02724 5.12622 5.22496 5.24635 5.35244 5.41184 5.47312 5.51244 5.68982 5.73140 5.77941 5.87972 6.07866 6.26256 6.31367 6.46917 6.77932 6.86469 7.14003 7.53516 8.97127 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.019081 B = 0.010488 C = 0.008227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.059013 B = 2669.100365 C = 3402.678253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.070 4.070 3 H 0.065 0.935 4 C -0.067 4.067 5 C -0.099 4.099 6 C -0.155 4.155 7 C 0.056 3.944 8 F -0.152 7.152 9 C -0.174 4.174 10 C -0.077 4.077 11 C -0.054 4.054 12 C 0.108 3.892 13 C -0.496 4.496 14 H 0.048 0.952 15 C 0.034 3.966 16 N -0.890 5.890 17 Si 0.935 3.065 18 H -0.287 1.287 19 H -0.292 1.292 20 H -0.271 1.271 21 C 0.079 3.921 22 N -0.835 5.835 23 H 0.034 0.966 24 H 0.056 0.944 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.142 0.858 29 H 0.135 0.865 30 H 0.138 0.862 31 H 0.258 0.742 32 H 0.035 0.965 33 H 0.038 0.962 34 H 0.338 0.662 35 H 0.325 0.675 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.188 -0.093 4.329 6.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.089 4.089 3 H 0.084 0.916 4 C -0.104 4.104 5 C -0.099 4.099 6 C -0.174 4.174 7 C 0.037 3.963 8 F -0.131 7.131 9 C -0.192 4.192 10 C -0.096 4.096 11 C -0.055 4.055 12 C 0.107 3.893 13 C -0.534 4.534 14 H 0.067 0.933 15 C -0.166 4.166 16 N -0.529 5.529 17 Si 0.763 3.237 18 H -0.214 1.214 19 H -0.218 1.218 20 H -0.196 1.196 21 C -0.052 4.052 22 N -0.363 5.363 23 H 0.053 0.947 24 H 0.075 0.925 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.103 0.897 28 H 0.159 0.841 29 H 0.153 0.847 30 H 0.155 0.845 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.150 0.850 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.360 -0.072 4.936 6.586 hybrid contribution 1.682 -0.616 -1.405 2.277 sum -2.677 -0.688 3.531 4.484 Atomic orbital electron populations 1.21778 0.94693 1.00102 1.02239 1.21684 0.95453 0.98116 0.93597 0.91612 1.21085 1.01055 0.89679 0.98537 1.20796 0.99184 0.95150 0.94743 1.20531 1.05824 0.90393 1.00635 1.17502 1.07066 0.81454 0.90246 1.91400 1.93826 1.47282 1.80589 1.21189 1.05899 0.99826 0.92337 1.21066 0.96399 0.90509 1.01607 1.21334 0.94236 0.96510 0.93456 1.17802 0.93365 0.86464 0.91679 1.21136 1.05466 1.16055 1.10769 0.93328 1.25373 0.99092 0.95216 0.96943 1.69844 1.39411 1.23744 1.19856 0.85975 0.81592 0.78957 0.77147 1.21371 1.21812 1.19625 1.21649 0.95680 0.89345 0.98486 1.58766 1.12932 1.22308 1.42266 0.94706 0.92521 0.90989 0.91041 0.89721 0.84064 0.84685 0.84461 0.93277 0.94656 0.94361 0.84956 0.86490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.34 7.88 71.98 0.57 -3.77 16 2 C -0.07 -2.64 2.85 -9.90 -0.03 -2.67 16 3 H 0.07 2.57 7.76 -2.38 -0.02 2.55 16 4 C -0.07 -2.35 6.31 30.52 0.19 -2.15 16 5 C -0.10 -3.90 6.14 -19.55 -0.12 -4.02 16 6 C -0.16 -5.72 10.02 22.34 0.22 -5.49 16 7 C 0.06 2.15 7.30 22.35 0.16 2.31 16 8 F -0.15 -5.47 17.27 44.97 0.78 -4.70 16 9 C -0.17 -6.87 10.03 22.28 0.22 -6.64 16 10 C -0.08 -3.41 8.77 22.26 0.20 -3.22 16 11 C -0.05 -2.39 4.67 -19.58 -0.09 -2.48 16 12 C 0.11 4.66 0.26 -53.03 -0.01 4.65 16 13 C -0.50 -23.94 6.81 25.60 0.17 -23.76 16 14 H 0.05 2.41 7.61 -2.91 -0.02 2.38 16 15 C 0.03 1.65 5.12 84.65 0.43 2.09 16 16 N -0.89 -43.88 8.05 21.45 0.17 -43.70 16 17 Si 0.94 40.60 29.54 68.60 2.03 42.62 16 18 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 19 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 20 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 21 C 0.08 3.33 4.58 86.30 0.40 3.73 16 22 N -0.83 -31.46 8.20 -186.72 -1.53 -32.99 16 23 H 0.03 1.17 7.85 -2.39 -0.02 1.15 16 24 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.07 2.46 5.94 -2.39 -0.01 2.44 16 26 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 27 H 0.08 2.50 7.92 -2.39 -0.02 2.48 16 28 H 0.14 4.37 8.06 -2.91 -0.02 4.34 16 29 H 0.14 4.71 8.06 -2.91 -0.02 4.69 16 30 H 0.14 6.46 5.90 -2.91 -0.02 6.44 16 31 H 0.26 12.55 8.31 -92.71 -0.77 11.78 16 32 H 0.04 1.43 6.35 -2.39 -0.02 1.42 16 33 H 0.04 1.81 5.58 -2.38 -0.01 1.80 16 34 H 0.34 13.83 7.87 -89.69 -0.71 13.12 16 35 H 0.32 10.65 9.08 -89.69 -0.81 9.84 16 Total: -1.00 -50.01 277.67 3.36 -46.65 By element: Atomic # 1 Polarization: 33.95 SS G_CDS: -0.39 Total: 33.55 kcal Atomic # 6 Polarization: -43.75 SS G_CDS: 2.31 Total: -41.43 kcal Atomic # 7 Polarization: -75.33 SS G_CDS: -1.36 Total: -76.69 kcal Atomic # 9 Polarization: -5.47 SS G_CDS: 0.78 Total: -4.70 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.62 kcal Total: -50.01 3.36 -46.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260778266.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.035 kcal (2) G-P(sol) polarization free energy of solvation -50.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds