Wall clock time and date at job start Mon Mar 30 2020 07:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00272 * 2 1 4 4 H 1.48504 * 109.47489 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47151 * 300.00267 * 3 2 1 6 6 H 1.48506 * 109.47075 * 59.99638 * 3 2 1 7 7 C 1.37876 * 119.99982 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00301 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99953 * 359.97438 * 7 2 1 10 10 C 1.50702 * 109.47298 * 179.97438 * 9 7 2 11 11 N 1.30165 * 126.80602 * 269.98184 * 10 9 7 12 12 O 1.20923 * 111.60719 * 180.02562 * 11 10 9 13 13 C 1.34036 * 111.56619 * 359.75989 * 12 11 10 14 14 C 1.35451 * 106.44421 * 0.38185 * 13 12 11 15 15 C 1.50704 * 128.00572 * 179.91159 * 14 13 12 16 16 C 1.50473 * 109.79081 * 300.16419 * 15 14 13 17 17 C 1.54062 * 112.49935 * 213.95670 * 16 15 14 18 18 C 1.54063 * 112.81900 * 318.28190 * 17 16 15 19 19 C 1.50476 * 112.49543 * 318.28706 * 18 17 16 20 20 C 1.54239 * 108.52593 * 94.14820 * 19 18 17 21 21 C 1.45545 * 112.40404 * 280.01355 * 20 19 18 22 22 H 0.96998 * 119.99937 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46820 * 60.00558 * 9 7 2 24 24 H 1.08998 * 109.47547 * 300.00104 * 9 7 2 25 25 H 1.08001 * 126.78092 * 180.28622 * 13 12 11 26 26 H 1.09002 * 109.62757 * 179.67634 * 15 14 13 27 27 H 1.09003 * 108.87840 * 334.73605 * 16 15 14 28 28 H 1.08999 * 108.87527 * 93.17714 * 16 15 14 29 29 H 1.09006 * 108.81431 * 197.42361 * 17 16 15 30 30 H 1.08999 * 108.81287 * 79.14518 * 17 16 15 31 31 H 1.08996 * 108.88521 * 197.50440 * 18 17 16 32 32 H 1.09003 * 108.79988 * 79.00443 * 18 17 16 33 33 H 1.08996 * 109.62779 * 334.43663 * 19 18 17 34 34 H 1.09009 * 109.78493 * 213.95073 * 19 18 17 35 35 H 1.08999 * 108.89697 * 159.25855 * 20 19 18 36 36 H 1.08998 * 108.89585 * 40.76729 * 20 19 18 37 37 H 1.08992 * 108.89278 * 301.17893 * 21 20 19 38 38 H 1.09005 * 108.89494 * 182.69094 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2302 -3.6446 0.0015 11 7 2.7359 -4.2381 -1.0409 12 8 3.4941 -5.1252 -0.7240 13 6 3.5957 -5.2342 0.6080 14 6 2.7813 -4.2880 1.1334 15 6 2.5265 -3.9865 2.5878 16 6 1.9625 -5.2037 3.2693 17 6 0.9525 -4.8450 4.3759 18 6 1.4051 -3.6472 5.2326 19 6 2.8713 -3.7000 5.5671 20 6 3.6434 -2.8743 4.5177 21 6 3.8528 -3.6087 3.2786 22 1 -0.4850 0.8400 -0.0004 23 1 0.6241 -2.5575 -0.8881 24 1 0.6246 -2.5563 0.8919 25 1 4.2053 -5.9385 1.1546 26 1 1.8212 -3.1597 2.6723 27 1 1.4645 -5.8254 2.5253 28 1 2.7814 -5.7723 3.7100 29 1 0.8195 -5.7108 5.0247 30 1 -0.0049 -4.6046 3.9135 31 1 0.8320 -3.6399 6.1597 32 1 1.2013 -2.7268 4.6853 33 1 3.2150 -4.7341 5.5444 34 1 3.0389 -3.2800 6.5589 35 1 4.6127 -2.5958 4.9311 36 1 3.0810 -1.9666 4.2993 37 1 4.4086 -4.5201 3.4982 38 1 4.4421 -2.9932 2.5988 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260887236.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:41 Heat of formation + Delta-G solvation = 23.375938 kcal Electronic energy + Delta-G solvation = -18819.788969 eV Core-core repulsion = 16050.092617 eV Total energy + Delta-G solvation = -2769.696352 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.08867 -38.85870 -34.67874 -33.11216 -32.25793 -31.85709 -29.88234 -28.17761 -25.01830 -24.38396 -23.62928 -21.59517 -20.38804 -19.85739 -18.67550 -16.94256 -16.75868 -16.10779 -15.43887 -14.72799 -14.54111 -14.41387 -13.98997 -13.44007 -12.88305 -12.70011 -12.45731 -12.19253 -12.04693 -11.76680 -11.50192 -10.90348 -10.80277 -10.69375 -10.65185 -10.51141 -10.33260 -10.16718 -10.07356 -9.95913 -9.82561 -9.64901 -8.69400 -8.62805 -8.46281 -6.08779 -4.11591 2.22906 3.19226 3.27434 3.35617 3.41507 3.99522 4.41901 4.75942 4.88185 4.96919 5.15500 5.27572 5.35068 5.38707 5.43561 5.46020 5.49767 5.64305 5.67482 5.90086 5.95877 5.96422 6.09226 6.25833 6.30543 6.35380 6.38897 6.41554 6.45461 6.50743 6.56214 6.64819 6.83076 7.03154 7.45548 7.53805 7.86799 8.23588 8.90953 9.21668 9.51812 11.01910 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.016133 B = 0.008560 C = 0.006635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.187234 B = 3270.358273 C = 4218.907393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.508 4.508 8 H 0.056 0.944 9 C 0.088 3.912 10 C 0.066 3.934 11 N -0.383 5.383 12 O 0.077 5.923 13 C -0.091 4.091 14 C -0.184 4.184 15 C -0.006 4.006 16 C -0.108 4.108 17 C -0.114 4.114 18 C -0.123 4.123 19 C -0.115 4.115 20 C -0.119 4.119 21 C -0.105 4.105 22 H 0.262 0.738 23 H 0.035 0.965 24 H 0.041 0.959 25 H 0.201 0.799 26 H 0.096 0.904 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.053 0.947 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.355 -9.719 10.935 15.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.547 4.547 8 H 0.074 0.926 9 C 0.050 3.950 10 C -0.093 4.093 11 N -0.091 5.091 12 O 0.016 5.984 13 C -0.173 4.173 14 C -0.188 4.188 15 C -0.025 4.025 16 C -0.146 4.146 17 C -0.152 4.152 18 C -0.160 4.160 19 C -0.152 4.152 20 C -0.157 4.157 21 C -0.142 4.142 22 H 0.072 0.928 23 H 0.053 0.947 24 H 0.059 0.941 25 H 0.217 0.783 26 H 0.114 0.886 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.082 -9.476 9.607 14.419 hybrid contribution 0.454 0.971 0.819 1.349 sum 5.536 -8.505 10.426 14.550 Atomic orbital electron populations 1.69956 1.05963 1.26821 1.50371 1.24951 0.94880 0.99177 0.95077 0.86475 0.80133 0.83417 0.77700 1.19702 1.20850 1.20830 1.20948 0.92971 0.89605 1.51171 0.92603 1.17769 0.91171 0.87219 0.98855 1.24440 0.99559 0.98483 0.86817 1.73814 1.07937 1.02855 1.24537 1.84771 1.49246 1.41882 1.22470 1.25465 1.03967 1.03254 0.84602 1.21252 1.01444 0.98708 0.97378 1.19177 0.97654 0.98831 0.86849 1.21411 0.98625 0.97380 0.97141 1.21873 0.98961 0.97679 0.96668 1.21370 0.96024 0.99401 0.99252 1.21325 0.95521 1.00286 0.98085 1.20503 1.00294 0.99516 0.95369 1.20470 0.96860 1.00209 0.96658 0.92794 0.94685 0.94102 0.78272 0.88591 0.92215 0.92400 0.92729 0.92067 0.92755 0.91363 0.91957 0.92464 0.92650 0.91427 0.92788 0.91857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 7 C -0.51 -14.40 9.09 -34.44 -0.31 -14.72 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 9 C 0.09 2.32 5.35 -29.03 -0.16 2.16 16 10 C 0.07 1.53 6.52 -82.10 -0.54 0.99 16 11 N -0.38 -8.79 12.07 33.42 0.40 -8.39 16 12 O 0.08 1.48 11.20 17.19 0.19 1.68 16 13 C -0.09 -1.46 12.01 29.74 0.36 -1.10 16 14 C -0.18 -3.42 4.65 -104.42 -0.49 -3.91 16 15 C -0.01 -0.10 2.26 -92.38 -0.21 -0.31 16 16 C -0.11 -1.41 4.79 -27.44 -0.13 -1.54 16 17 C -0.11 -1.39 5.85 -25.62 -0.15 -1.54 16 18 C -0.12 -1.48 5.32 -27.44 -0.15 -1.62 16 19 C -0.11 -1.27 5.61 -27.34 -0.15 -1.42 16 20 C -0.12 -1.52 5.26 -29.60 -0.16 -1.68 16 21 C -0.10 -1.46 4.58 -29.60 -0.14 -1.59 16 22 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 23 H 0.03 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.04 1.09 7.56 -51.93 -0.39 0.70 16 25 H 0.20 2.21 8.06 -52.49 -0.42 1.79 16 26 H 0.10 1.79 6.19 -51.93 -0.32 1.47 16 27 H 0.06 0.82 7.71 -51.93 -0.40 0.42 16 28 H 0.06 0.65 6.63 -51.93 -0.34 0.31 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.95 6.63 -51.93 -0.34 0.60 16 33 H 0.06 0.65 6.98 -51.93 -0.36 0.28 16 34 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.98 7.47 -51.93 -0.39 0.59 16 37 H 0.05 0.64 7.47 -51.93 -0.39 0.25 16 38 H 0.06 1.00 7.96 -51.93 -0.41 0.59 16 LS Contribution 301.71 15.07 4.55 4.55 Total: -1.00 -30.37 301.71 -7.31 -37.68 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -5.85 Total: -2.05 kcal Atomic # 6 Polarization: -22.34 SS G_CDS: -2.31 Total: -24.65 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: 1.14 Total: -33.83 kcal Atomic # 8 Polarization: 1.48 SS G_CDS: 0.19 Total: 1.68 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.37 -7.31 -37.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260887236.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.051 kcal (2) G-P(sol) polarization free energy of solvation -30.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds