Wall clock time and date at job start Mon Mar 30 2020 07:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00272 * 2 1 4 4 H 1.48504 * 109.47489 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47151 * 300.00267 * 3 2 1 6 6 H 1.48506 * 109.47075 * 59.99638 * 3 2 1 7 7 C 1.37876 * 119.99982 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00301 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99953 * 359.97438 * 7 2 1 10 10 C 1.50702 * 109.47298 * 179.97438 * 9 7 2 11 11 N 1.30165 * 126.80602 * 269.98184 * 10 9 7 12 12 O 1.20923 * 111.60719 * 180.02562 * 11 10 9 13 13 C 1.34036 * 111.56619 * 359.75989 * 12 11 10 14 14 C 1.35451 * 106.44421 * 0.38185 * 13 12 11 15 15 C 1.50704 * 128.00572 * 179.91159 * 14 13 12 16 16 C 1.50473 * 109.79081 * 300.16419 * 15 14 13 17 17 C 1.54062 * 112.49935 * 213.95670 * 16 15 14 18 18 C 1.54063 * 112.81900 * 318.28190 * 17 16 15 19 19 C 1.50476 * 112.49543 * 318.28706 * 18 17 16 20 20 C 1.54239 * 108.52593 * 94.14820 * 19 18 17 21 21 C 1.45545 * 112.40404 * 280.01355 * 20 19 18 22 22 H 0.96998 * 119.99937 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46820 * 60.00558 * 9 7 2 24 24 H 1.08998 * 109.47547 * 300.00104 * 9 7 2 25 25 H 1.08001 * 126.78092 * 180.28622 * 13 12 11 26 26 H 1.09002 * 109.62757 * 179.67634 * 15 14 13 27 27 H 1.09003 * 108.87840 * 334.73605 * 16 15 14 28 28 H 1.08999 * 108.87527 * 93.17714 * 16 15 14 29 29 H 1.09006 * 108.81431 * 197.42361 * 17 16 15 30 30 H 1.08999 * 108.81287 * 79.14518 * 17 16 15 31 31 H 1.08996 * 108.88521 * 197.50440 * 18 17 16 32 32 H 1.09003 * 108.79988 * 79.00443 * 18 17 16 33 33 H 1.08996 * 109.62779 * 334.43663 * 19 18 17 34 34 H 1.09009 * 109.78493 * 213.95073 * 19 18 17 35 35 H 1.08999 * 108.89697 * 159.25855 * 20 19 18 36 36 H 1.08998 * 108.89585 * 40.76729 * 20 19 18 37 37 H 1.08992 * 108.89278 * 301.17893 * 21 20 19 38 38 H 1.09005 * 108.89494 * 182.69094 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2302 -3.6446 0.0015 11 7 2.7359 -4.2381 -1.0409 12 8 3.4941 -5.1252 -0.7240 13 6 3.5957 -5.2342 0.6080 14 6 2.7813 -4.2880 1.1334 15 6 2.5265 -3.9865 2.5878 16 6 1.9625 -5.2037 3.2693 17 6 0.9525 -4.8450 4.3759 18 6 1.4051 -3.6472 5.2326 19 6 2.8713 -3.7000 5.5671 20 6 3.6434 -2.8743 4.5177 21 6 3.8528 -3.6087 3.2786 22 1 -0.4850 0.8400 -0.0004 23 1 0.6241 -2.5575 -0.8881 24 1 0.6246 -2.5563 0.8919 25 1 4.2053 -5.9385 1.1546 26 1 1.8212 -3.1597 2.6723 27 1 1.4645 -5.8254 2.5253 28 1 2.7814 -5.7723 3.7100 29 1 0.8195 -5.7108 5.0247 30 1 -0.0049 -4.6046 3.9135 31 1 0.8320 -3.6399 6.1597 32 1 1.2013 -2.7268 4.6853 33 1 3.2150 -4.7341 5.5444 34 1 3.0389 -3.2800 6.5589 35 1 4.6127 -2.5958 4.9311 36 1 3.0810 -1.9666 4.2993 37 1 4.4086 -4.5201 3.4982 38 1 4.4421 -2.9932 2.5988 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260887236.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:41 Heat of formation + Delta-G solvation = 6.588720 kcal Electronic energy + Delta-G solvation = -18820.516918 eV Core-core repulsion = 16050.092617 eV Total energy + Delta-G solvation = -2770.424301 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.73656 -39.95106 -36.37875 -34.88832 -33.56170 -33.26388 -31.24014 -30.23458 -26.22191 -25.72268 -25.38474 -22.90370 -22.04626 -20.99235 -19.82489 -18.84323 -18.31611 -18.10159 -16.77426 -16.39319 -15.83798 -15.53226 -15.20077 -14.68779 -14.50784 -14.13778 -13.88776 -13.87265 -13.49825 -13.07097 -12.98628 -12.74762 -12.73564 -12.12936 -11.95200 -11.90892 -11.69795 -11.61775 -11.47117 -11.23010 -11.10558 -10.92960 -10.68594 -10.45190 -10.09793 -8.29765 -6.42013 0.81193 1.32750 1.34353 1.45954 1.54067 2.35069 2.66694 3.02176 3.55237 3.64667 3.86348 3.97611 4.04664 4.28714 4.32020 4.37659 4.42385 4.54107 4.57520 4.63882 4.82095 4.94162 5.00042 5.06359 5.12992 5.20039 5.27546 5.30434 5.36638 5.40398 5.41165 5.43336 5.45335 5.54414 5.61769 5.66723 5.69007 6.03311 6.65721 7.25908 7.65707 8.81659 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.016133 B = 0.008560 C = 0.006635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.187234 B = 3270.358273 C = 4218.907393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.010 3.990 3 Si 0.965 3.035 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.269 1.269 7 C -0.526 4.526 8 H 0.047 0.953 9 C 0.101 3.899 10 C 0.024 3.976 11 N -0.414 5.414 12 O 0.090 5.910 13 C -0.057 4.057 14 C -0.196 4.196 15 C -0.003 4.003 16 C -0.103 4.103 17 C -0.114 4.114 18 C -0.123 4.123 19 C -0.107 4.107 20 C -0.121 4.121 21 C -0.098 4.098 22 H 0.268 0.732 23 H -0.003 1.003 24 H 0.023 0.977 25 H 0.264 0.736 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.038 0.962 31 H 0.068 0.932 32 H 0.034 0.966 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.035 0.965 37 H 0.091 0.909 38 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.756 -11.268 12.988 18.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.188 4.188 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.194 1.194 7 C -0.565 4.565 8 H 0.065 0.935 9 C 0.063 3.937 10 C -0.133 4.133 11 N -0.121 5.121 12 O 0.026 5.974 13 C -0.138 4.138 14 C -0.200 4.200 15 C -0.022 4.022 16 C -0.140 4.140 17 C -0.152 4.152 18 C -0.161 4.161 19 C -0.144 4.144 20 C -0.158 4.158 21 C -0.136 4.136 22 H 0.077 0.923 23 H 0.015 0.985 24 H 0.041 0.959 25 H 0.279 0.721 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.111 0.889 29 H 0.101 0.899 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.053 0.947 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.054 0.946 37 H 0.109 0.891 38 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 7.460 -11.007 11.655 17.682 hybrid contribution -0.306 1.393 0.166 1.436 sum 7.153 -9.614 11.821 16.833 Atomic orbital electron populations 1.70067 1.07531 1.28127 1.50684 1.25862 0.95810 1.02944 0.94232 0.85394 0.78758 0.78614 0.78317 1.19233 1.20048 1.19370 1.21140 0.92608 0.90946 1.51775 0.93502 1.17344 0.91421 0.88842 0.96047 1.24154 1.00788 0.99041 0.89317 1.73773 1.09020 1.03984 1.25293 1.84708 1.47847 1.40375 1.24432 1.26401 1.02264 1.02289 0.82834 1.21510 1.01863 0.99041 0.97578 1.19181 0.98154 0.98857 0.86023 1.21380 0.99716 0.95871 0.97030 1.21881 0.97737 0.98742 0.96812 1.21374 0.97531 0.97820 0.99372 1.21294 0.93916 1.01180 0.97996 1.20505 1.01055 0.98547 0.95713 1.20457 0.95399 1.01498 0.96221 0.92293 0.98515 0.95893 0.72070 0.93026 0.93016 0.88919 0.89918 0.94305 0.91289 0.94735 0.89808 0.90903 0.90833 0.94642 0.89063 0.94386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.54 13.29 21.45 0.28 -56.25 16 2 C 0.01 0.61 5.46 84.65 0.46 1.08 16 3 Si 0.97 45.41 29.54 68.60 2.03 47.43 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 7 C -0.53 -31.46 9.09 25.60 0.23 -31.23 16 8 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 9 C 0.10 5.79 5.35 29.10 0.16 5.94 16 10 C 0.02 1.18 6.52 43.58 0.28 1.46 16 11 N -0.41 -19.41 12.07 -49.57 -0.60 -20.01 16 12 O 0.09 3.34 11.20 71.67 0.80 4.14 16 13 C -0.06 -1.64 12.01 67.18 0.81 -0.83 16 14 C -0.20 -7.21 4.65 -19.73 -0.09 -7.30 16 15 C 0.00 -0.09 2.26 -11.94 -0.03 -0.12 16 16 C -0.10 -2.44 4.79 30.14 0.14 -2.29 16 17 C -0.11 -2.61 5.85 31.31 0.18 -2.43 16 18 C -0.12 -2.84 5.32 30.14 0.16 -2.68 16 19 C -0.11 -2.04 5.61 30.20 0.17 -1.87 16 20 C -0.12 -2.90 5.26 28.74 0.15 -2.75 16 21 C -0.10 -2.55 4.58 28.74 0.13 -2.42 16 22 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 23 H 0.00 -0.22 8.14 -2.38 -0.02 -0.24 16 24 H 0.02 1.35 7.56 -2.39 -0.02 1.33 16 25 H 0.26 4.04 8.06 -2.91 -0.02 4.02 16 26 H 0.05 2.08 6.19 -2.39 -0.01 2.06 16 27 H 0.05 1.32 7.71 -2.39 -0.02 1.30 16 28 H 0.09 1.58 6.63 -2.39 -0.02 1.57 16 29 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 30 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.03 1.01 6.63 -2.39 -0.02 1.00 16 33 H 0.08 1.30 6.98 -2.39 -0.02 1.28 16 34 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 35 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.03 1.06 7.47 -2.39 -0.02 1.04 16 37 H 0.09 1.70 7.47 -2.39 -0.02 1.68 16 38 H 0.04 1.16 7.96 -2.38 -0.02 1.14 16 Total: -1.00 -71.30 301.71 6.31 -64.99 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: 1.03 Total: 5.14 kcal Atomic # 6 Polarization: -48.21 SS G_CDS: 2.76 Total: -45.45 kcal Atomic # 7 Polarization: -75.94 SS G_CDS: -0.31 Total: -76.26 kcal Atomic # 8 Polarization: 3.34 SS G_CDS: 0.80 Total: 4.14 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Total: -71.30 6.31 -64.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260887236.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.578 kcal (2) G-P(sol) polarization free energy of solvation -71.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds