Wall clock time and date at job start Mon Mar 30 2020 06:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47686 * 2 1 4 4 N 1.46902 * 109.47041 * 120.00168 * 2 1 3 5 5 C 1.40199 * 110.99961 * 328.70537 * 4 2 1 6 6 C 1.39369 * 129.92190 * 319.76974 * 5 4 2 7 7 C 1.37924 * 120.22895 * 180.71733 * 6 5 4 8 8 C 1.38480 * 120.23535 * 0.02562 * 7 6 5 9 9 F 1.35105 * 120.08447 * 179.87326 * 8 7 6 10 10 C 1.38481 * 119.83481 * 359.88751 * 8 7 6 11 11 C 1.37946 * 120.06070 * 359.96802 * 10 8 7 12 12 C 1.51576 * 131.53363 * 180.29011 * 11 10 8 13 13 C 1.47910 * 111.00251 * 88.64679 * 4 2 1 14 14 H 1.08998 * 110.94146 * 92.54622 * 13 4 2 15 15 C 1.50708 * 110.77372 * 329.19168 * 13 4 2 16 16 H 1.07999 * 120.00218 * 6.89031 * 15 13 4 17 17 C 1.37882 * 119.99519 * 186.88763 * 15 13 4 18 18 N 1.31514 * 120.00295 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 119.99613 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47341 * 270.00027 * 19 17 15 21 21 H 1.48502 * 109.47437 * 30.00046 * 19 17 15 22 22 H 1.48505 * 109.47270 * 150.00298 * 19 17 15 23 23 H 1.09001 * 109.47666 * 199.60694 * 1 2 3 24 24 H 1.08997 * 109.47057 * 319.60719 * 1 2 3 25 25 H 1.08998 * 109.47284 * 79.60078 * 1 2 3 26 26 H 1.09000 * 109.46997 * 239.99743 * 2 1 3 27 27 H 1.08999 * 109.47513 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47076 * 300.00496 * 3 2 1 29 29 H 1.09007 * 109.46792 * 59.99734 * 3 2 1 30 30 H 1.07998 * 119.88556 * 0.73405 * 6 5 4 31 31 H 1.08001 * 119.88162 * 179.97438 * 7 6 5 32 32 H 1.08003 * 119.96908 * 180.02562 * 10 8 7 33 33 H 1.09007 * 110.73206 * 45.69684 * 12 11 10 34 34 H 1.08991 * 110.88834 * 282.45209 * 12 11 10 35 35 H 0.96995 * 119.99738 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.1326 -0.5270 2.2725 6 6 0.4152 0.5982 2.6745 7 6 -0.4006 0.5414 3.7851 8 6 -0.5124 -0.6340 4.5088 9 9 -1.3105 -0.6855 5.5977 10 6 0.1962 -1.7563 4.1138 11 6 1.0106 -1.7033 3.0017 12 6 1.8827 -2.7540 2.3436 13 6 2.1655 -2.1434 0.9514 14 1 3.1770 -2.3827 0.6231 15 6 1.1518 -2.6178 -0.0578 16 1 0.5261 -1.9031 -0.5717 17 6 1.0232 -3.9643 -0.3250 18 7 1.7848 -4.8347 0.3011 19 14 -0.2328 -4.5523 -1.5765 20 1 -1.5247 -4.8178 -0.8940 21 1 -0.4262 -3.5064 -2.6127 22 1 0.2539 -5.8003 -2.2175 23 1 -0.3634 -0.9681 0.3448 24 1 -0.3633 0.7827 0.6659 25 1 -0.3634 0.1855 -1.0108 26 1 1.8932 -0.5139 -0.8900 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 0.4983 1.5178 2.1143 31 1 -0.9536 1.4169 4.0919 32 1 0.1103 -2.6742 4.6764 33 1 1.3450 -3.6975 2.2487 34 1 2.8094 -2.8939 2.9000 35 1 2.4373 -4.5293 0.9506 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260994976.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:03 Heat of formation + Delta-G solvation = 0.939833 kcal Electronic energy + Delta-G solvation = -18925.671025 eV Core-core repulsion = 16031.541465 eV Total energy + Delta-G solvation = -2894.129560 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.38228 -40.49111 -36.46137 -34.35071 -32.39809 -30.30768 -28.38438 -27.47330 -26.99390 -24.62836 -22.20105 -21.60133 -20.49801 -19.55368 -17.26887 -16.62843 -16.11504 -15.47736 -15.16289 -14.62724 -14.26874 -13.92920 -13.79674 -13.13161 -12.80732 -12.68104 -12.37946 -12.29298 -11.88619 -11.69659 -11.32943 -11.15632 -11.00365 -10.77933 -10.63922 -10.43925 -10.23655 -10.13222 -9.86875 -9.37617 -8.62904 -8.49659 -8.31723 -6.91746 -6.44646 -4.29365 1.73901 1.76602 3.34935 3.35883 3.51332 4.03746 4.38879 4.59969 4.74724 5.10487 5.18100 5.31422 5.43135 5.66779 5.68690 5.73241 5.88474 6.04010 6.05796 6.10849 6.20372 6.33120 6.36525 6.40571 6.51833 6.57310 6.63664 6.73235 6.91302 7.00780 7.03338 7.17109 7.36559 7.57487 7.93008 8.05940 8.28547 8.64216 9.42985 10.84048 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.020012 B = 0.009459 C = 0.007774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.839003 B = 2959.488130 C = 3600.755073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.083 3.917 3 C -0.145 4.145 4 N -0.473 5.473 5 C 0.123 3.877 6 C -0.128 4.128 7 C -0.139 4.139 8 C 0.050 3.950 9 F -0.152 7.152 10 C -0.122 4.122 11 C -0.092 4.092 12 C -0.093 4.093 13 C 0.198 3.802 14 H 0.050 0.950 15 C -0.634 4.634 16 H 0.081 0.919 17 C 0.030 3.970 18 N -0.905 5.905 19 Si 1.065 2.935 20 H -0.287 1.287 21 H -0.287 1.287 22 H -0.283 1.283 23 H 0.088 0.912 24 H 0.052 0.948 25 H 0.048 0.952 26 H 0.094 0.906 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.125 0.875 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.215 8.913 2.632 9.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.024 4.024 3 C -0.203 4.203 4 N -0.185 5.185 5 C 0.022 3.978 6 C -0.149 4.149 7 C -0.159 4.159 8 C 0.030 3.970 9 F -0.131 7.131 10 C -0.142 4.142 11 C -0.095 4.095 12 C -0.131 4.131 13 C 0.094 3.906 14 H 0.067 0.933 15 C -0.672 4.672 16 H 0.099 0.901 17 C -0.176 4.176 18 N -0.541 5.541 19 Si 0.893 3.107 20 H -0.214 1.214 21 H -0.213 1.213 22 H -0.209 1.209 23 H 0.106 0.894 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.112 0.888 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.145 0.855 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.112 0.888 34 H 0.078 0.922 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.274 7.755 1.944 8.313 hybrid contribution -0.191 1.039 0.829 1.342 sum -2.465 8.794 2.773 9.545 Atomic orbital electron populations 1.22887 0.96589 1.03757 1.01120 1.21633 0.93747 0.93564 0.93428 1.21978 1.01309 0.96208 1.00758 1.60881 1.39415 1.14218 1.04025 1.19724 0.90470 0.93243 0.94332 1.20363 0.98794 0.97947 0.97757 1.20634 1.01878 0.96818 0.96526 1.17293 0.96580 0.95555 0.87584 1.91417 1.72158 1.97170 1.52343 1.20264 0.98350 0.97595 0.97951 1.20566 0.97702 0.96063 0.95125 1.21740 0.96773 0.98303 0.96304 1.20533 0.98039 0.79552 0.92509 0.93284 1.22787 1.23064 0.95915 1.25430 0.90091 1.25722 0.99516 0.93030 0.99357 1.70785 1.20893 1.37297 1.25094 0.83579 0.75468 0.75961 0.75662 1.21354 1.21332 1.20850 0.89352 0.92897 0.93319 0.88786 0.92554 0.92852 0.93047 0.85530 0.85554 0.85722 0.88841 0.92205 0.91400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.37 6.79 37.15 0.25 -3.11 16 2 C 0.08 1.54 2.35 -67.72 -0.16 1.38 16 3 C -0.14 -2.18 9.29 37.16 0.35 -1.84 16 4 N -0.47 -9.75 4.91 -155.34 -0.76 -10.52 16 5 C 0.12 2.44 4.51 -83.35 -0.38 2.06 16 6 C -0.13 -2.19 7.41 -39.28 -0.29 -2.48 16 7 C -0.14 -2.27 10.00 -39.61 -0.40 -2.66 16 8 C 0.05 0.89 7.31 -39.40 -0.29 0.60 16 9 F -0.15 -2.62 17.27 2.25 0.04 -2.58 16 10 C -0.12 -2.32 10.01 -39.60 -0.40 -2.72 16 11 C -0.09 -1.91 6.22 -104.04 -0.65 -2.55 16 12 C -0.09 -2.08 5.45 -26.59 -0.15 -2.23 16 13 C 0.20 4.63 2.82 -67.45 -0.19 4.44 16 14 H 0.05 1.22 8.12 -51.93 -0.42 0.80 16 15 C -0.63 -15.84 6.70 -34.43 -0.23 -16.07 16 16 H 0.08 1.97 3.74 -52.49 -0.20 1.78 16 17 C 0.03 0.78 5.12 -17.82 -0.09 0.69 16 18 N -0.91 -25.03 12.87 55.43 0.71 -24.32 16 19 Si 1.07 23.74 29.90 -169.99 -5.08 18.66 16 20 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 H 0.09 1.89 5.28 -51.93 -0.27 1.62 16 24 H 0.05 0.86 5.16 -51.93 -0.27 0.60 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.09 1.91 6.86 -51.93 -0.36 1.55 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.73 5.70 -51.92 -0.30 0.44 16 30 H 0.13 1.91 4.90 -52.49 -0.26 1.66 16 31 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 32 H 0.12 2.18 8.06 -52.48 -0.42 1.76 16 33 H 0.09 2.30 6.13 -51.93 -0.32 1.98 16 34 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.27 7.44 5.89 -40.82 -0.24 7.20 16 LS Contribution 270.73 15.07 4.08 4.08 Total: -1.00 -26.58 270.73 -7.59 -34.17 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -3.96 Total: 4.99 kcal Atomic # 6 Polarization: -21.87 SS G_CDS: -2.61 Total: -24.49 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: -0.05 Total: -34.83 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.04 Total: -2.58 kcal Atomic # 14 Polarization: 23.74 SS G_CDS: -5.08 Total: 18.66 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -26.58 -7.59 -34.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260994976.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.109 kcal (2) G-P(sol) polarization free energy of solvation -26.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds