Wall clock time and date at job start Mon Mar 30 2020 06:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47686 * 2 1 4 4 N 1.46902 * 109.47041 * 120.00168 * 2 1 3 5 5 C 1.40199 * 110.99961 * 328.70537 * 4 2 1 6 6 C 1.39369 * 129.92190 * 319.76974 * 5 4 2 7 7 C 1.37924 * 120.22895 * 180.71733 * 6 5 4 8 8 C 1.38480 * 120.23535 * 0.02562 * 7 6 5 9 9 F 1.35105 * 120.08447 * 179.87326 * 8 7 6 10 10 C 1.38481 * 119.83481 * 359.88751 * 8 7 6 11 11 C 1.37946 * 120.06070 * 359.96802 * 10 8 7 12 12 C 1.51576 * 131.53363 * 180.29011 * 11 10 8 13 13 C 1.47910 * 111.00251 * 88.64679 * 4 2 1 14 14 H 1.08998 * 110.94146 * 92.54622 * 13 4 2 15 15 C 1.50708 * 110.77372 * 329.19168 * 13 4 2 16 16 H 1.07999 * 120.00218 * 6.89031 * 15 13 4 17 17 C 1.37882 * 119.99519 * 186.88763 * 15 13 4 18 18 N 1.31514 * 120.00295 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 119.99613 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47341 * 270.00027 * 19 17 15 21 21 H 1.48502 * 109.47437 * 30.00046 * 19 17 15 22 22 H 1.48505 * 109.47270 * 150.00298 * 19 17 15 23 23 H 1.09001 * 109.47666 * 199.60694 * 1 2 3 24 24 H 1.08997 * 109.47057 * 319.60719 * 1 2 3 25 25 H 1.08998 * 109.47284 * 79.60078 * 1 2 3 26 26 H 1.09000 * 109.46997 * 239.99743 * 2 1 3 27 27 H 1.08999 * 109.47513 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47076 * 300.00496 * 3 2 1 29 29 H 1.09007 * 109.46792 * 59.99734 * 3 2 1 30 30 H 1.07998 * 119.88556 * 0.73405 * 6 5 4 31 31 H 1.08001 * 119.88162 * 179.97438 * 7 6 5 32 32 H 1.08003 * 119.96908 * 180.02562 * 10 8 7 33 33 H 1.09007 * 110.73206 * 45.69684 * 12 11 10 34 34 H 1.08991 * 110.88834 * 282.45209 * 12 11 10 35 35 H 0.96995 * 119.99738 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.1326 -0.5270 2.2725 6 6 0.4152 0.5982 2.6745 7 6 -0.4006 0.5414 3.7851 8 6 -0.5124 -0.6340 4.5088 9 9 -1.3105 -0.6855 5.5977 10 6 0.1962 -1.7563 4.1138 11 6 1.0106 -1.7033 3.0017 12 6 1.8827 -2.7540 2.3436 13 6 2.1655 -2.1434 0.9514 14 1 3.1770 -2.3827 0.6231 15 6 1.1518 -2.6178 -0.0578 16 1 0.5261 -1.9031 -0.5717 17 6 1.0232 -3.9643 -0.3250 18 7 1.7848 -4.8347 0.3011 19 14 -0.2328 -4.5523 -1.5765 20 1 -1.5247 -4.8178 -0.8940 21 1 -0.4262 -3.5064 -2.6127 22 1 0.2539 -5.8003 -2.2175 23 1 -0.3634 -0.9681 0.3448 24 1 -0.3633 0.7827 0.6659 25 1 -0.3634 0.1855 -1.0108 26 1 1.8932 -0.5139 -0.8900 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 0.4983 1.5178 2.1143 31 1 -0.9536 1.4169 4.0919 32 1 0.1103 -2.6742 4.6764 33 1 1.3450 -3.6975 2.2487 34 1 2.8094 -2.8939 2.9000 35 1 2.4373 -4.5293 0.9506 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260994976.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:03 Heat of formation + Delta-G solvation = -13.209205 kcal Electronic energy + Delta-G solvation = -18926.284573 eV Core-core repulsion = 16031.541465 eV Total energy + Delta-G solvation = -2894.743108 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.76679 -42.05120 -37.95492 -36.00722 -34.17421 -31.74262 -29.96957 -29.10808 -28.38990 -26.43248 -23.74124 -23.07741 -22.20919 -21.03413 -19.11872 -18.06824 -17.61890 -16.99580 -16.59825 -16.15139 -15.93931 -15.55192 -15.35954 -14.70998 -14.20820 -14.13517 -13.92380 -13.78765 -13.32509 -13.23613 -12.97362 -12.79025 -12.54013 -12.44214 -12.21833 -12.03912 -11.97129 -11.72247 -11.30976 -11.00894 -10.54521 -10.24035 -9.81784 -8.66174 -8.32956 -6.34113 0.28476 0.32558 1.52199 1.58221 1.74591 2.52825 2.58627 3.06721 3.18933 3.29829 3.66857 3.96944 4.00498 4.18031 4.30694 4.34932 4.40542 4.51274 4.56962 4.64482 4.77137 4.88161 4.94319 4.98362 5.08637 5.14296 5.19552 5.22162 5.29745 5.36336 5.51636 5.59815 5.78743 5.90072 6.10924 6.36316 6.48142 6.60453 7.45369 8.78707 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.020012 B = 0.009459 C = 0.007774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.839003 B = 2959.488130 C = 3600.755073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.077 3.923 3 C -0.135 4.135 4 N -0.476 5.476 5 C 0.108 3.892 6 C -0.118 4.118 7 C -0.122 4.122 8 C 0.049 3.951 9 F -0.147 7.147 10 C -0.130 4.130 11 C -0.122 4.122 12 C -0.086 4.086 13 C 0.195 3.805 14 H 0.021 0.979 15 C -0.628 4.628 16 H 0.089 0.911 17 C -0.020 4.020 18 N -0.936 5.936 19 Si 1.105 2.895 20 H -0.282 1.282 21 H -0.267 1.267 22 H -0.287 1.287 23 H 0.051 0.949 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.052 0.948 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.156 0.844 31 H 0.168 0.832 32 H 0.129 0.871 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.849 11.838 2.661 12.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.029 4.029 3 C -0.193 4.193 4 N -0.189 5.189 5 C 0.009 3.991 6 C -0.139 4.139 7 C -0.141 4.141 8 C 0.028 3.972 9 F -0.126 7.126 10 C -0.150 4.150 11 C -0.125 4.125 12 C -0.124 4.124 13 C 0.090 3.910 14 H 0.038 0.962 15 C -0.666 4.666 16 H 0.106 0.894 17 C -0.220 4.220 18 N -0.573 5.573 19 Si 0.929 3.071 20 H -0.208 1.208 21 H -0.192 1.192 22 H -0.213 1.213 23 H 0.070 0.930 24 H 0.094 0.906 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.072 0.928 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.174 0.826 31 H 0.185 0.815 32 H 0.147 0.853 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.911 10.711 1.981 11.573 hybrid contribution 0.312 0.190 0.893 0.965 sum -3.599 10.901 2.874 11.834 Atomic orbital electron populations 1.22756 0.95982 1.02402 1.02441 1.21739 0.94275 0.95345 0.91561 1.21899 1.01164 0.93570 1.02626 1.60887 1.40504 1.12250 1.05224 1.19910 0.91230 0.94081 0.93928 1.20669 0.97490 0.97805 0.97920 1.21058 1.00670 0.97328 0.95073 1.17389 0.96268 0.95685 0.87814 1.91434 1.71904 1.97164 1.52118 1.20377 0.98296 0.98677 0.97635 1.20495 0.99202 0.96077 0.96726 1.21474 0.96998 0.97604 0.96306 1.20316 0.96045 0.82013 0.92659 0.96162 1.23092 1.22621 0.95901 1.25016 0.89366 1.26914 1.00620 0.93885 1.00569 1.70862 1.22194 1.37865 1.26386 0.83061 0.73768 0.75900 0.74401 1.20796 1.19196 1.21305 0.92985 0.90590 0.91825 0.91422 0.92844 0.90362 0.91657 0.82627 0.81500 0.85341 0.91848 0.92235 0.92424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.01 6.79 71.98 0.49 -5.52 16 2 C 0.08 2.75 2.35 44.91 0.11 2.86 16 3 C -0.14 -3.62 9.29 71.98 0.67 -2.95 16 4 N -0.48 -19.55 4.91 -645.39 -3.17 -22.72 16 5 C 0.11 4.17 4.51 38.24 0.17 4.34 16 6 C -0.12 -3.60 7.41 22.47 0.17 -3.43 16 7 C -0.12 -3.44 10.00 22.25 0.22 -3.22 16 8 C 0.05 1.60 7.31 22.39 0.16 1.76 16 9 F -0.15 -4.66 17.27 44.97 0.78 -3.88 16 10 C -0.13 -4.88 10.01 22.26 0.22 -4.65 16 11 C -0.12 -5.12 6.22 -19.49 -0.12 -5.24 16 12 C -0.09 -4.03 5.45 30.68 0.17 -3.86 16 13 C 0.20 9.50 2.82 44.53 0.13 9.62 16 14 H 0.02 1.09 8.12 -2.39 -0.02 1.07 16 15 C -0.63 -32.21 6.70 25.60 0.17 -32.04 16 16 H 0.09 4.32 3.74 -2.91 -0.01 4.31 16 17 C -0.02 -1.06 5.12 84.66 0.43 -0.63 16 18 N -0.94 -54.08 12.87 21.45 0.28 -53.80 16 19 Si 1.11 48.37 29.90 68.60 2.05 50.42 16 20 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 21 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 22 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 23 H 0.05 2.16 5.28 -2.39 -0.01 2.14 16 24 H 0.08 2.17 5.16 -2.39 -0.01 2.16 16 25 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.07 2.74 6.86 -2.39 -0.02 2.72 16 27 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.06 1.56 5.70 -2.38 -0.01 1.55 16 30 H 0.16 3.83 4.90 -2.91 -0.01 3.82 16 31 H 0.17 3.40 8.06 -2.91 -0.02 3.38 16 32 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 33 H 0.06 3.32 6.13 -2.38 -0.01 3.31 16 34 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 35 H 0.26 15.30 5.89 -92.71 -0.55 14.76 16 Total: -1.00 -59.02 270.73 4.26 -54.77 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 1.34 Total: 18.18 kcal Atomic # 6 Polarization: -45.96 SS G_CDS: 2.99 Total: -42.97 kcal Atomic # 7 Polarization: -73.63 SS G_CDS: -2.89 Total: -76.52 kcal Atomic # 9 Polarization: -4.66 SS G_CDS: 0.78 Total: -3.88 kcal Atomic # 14 Polarization: 48.37 SS G_CDS: 2.05 Total: 50.42 kcal Total: -59.02 4.26 -54.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260994976.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.558 kcal (2) G-P(sol) polarization free energy of solvation -59.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds