Wall clock time and date at job start Mon Mar 30 2020 06:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47431 * 2 1 4 4 N 1.46898 * 109.46989 * 120.00036 * 2 1 3 5 5 C 1.40190 * 111.00188 * 55.05448 * 4 2 1 6 6 C 1.39383 * 129.93452 * 283.44103 * 5 4 2 7 7 C 1.37922 * 120.23057 * 179.67869 * 6 5 4 8 8 C 1.38487 * 120.23951 * 359.97438 * 7 6 5 9 9 F 1.35099 * 120.08298 * 180.17032 * 8 7 6 10 10 C 1.38468 * 119.82906 * 0.14849 * 8 7 6 11 11 C 1.37945 * 120.06638 * 359.97438 * 10 8 7 12 12 C 1.52088 * 131.49151 * 179.33889 * 11 10 8 13 13 C 1.47911 * 110.99984 * 174.99760 * 4 2 1 14 14 H 1.09002 * 110.77654 * 23.96817 * 13 4 2 15 15 C 1.50703 * 110.77795 * 147.20718 * 13 4 2 16 16 H 1.08006 * 120.00159 * 357.40798 * 15 13 4 17 17 C 1.37877 * 120.00120 * 177.41168 * 15 13 4 18 18 N 1.31514 * 120.00089 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99938 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47297 * 269.99556 * 19 17 15 21 21 H 1.48503 * 109.47261 * 149.99737 * 19 17 15 22 22 H 1.48500 * 109.47454 * 29.99730 * 19 17 15 23 23 H 1.08994 * 109.47247 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47189 * 300.00675 * 1 2 3 25 25 H 1.09001 * 109.46940 * 59.99806 * 1 2 3 26 26 H 1.08998 * 109.47419 * 239.99725 * 2 1 3 27 27 H 1.08997 * 109.47467 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47217 * 300.00024 * 3 2 1 29 29 H 1.09003 * 109.47485 * 59.99506 * 3 2 1 30 30 H 1.07993 * 119.88188 * 359.66311 * 6 5 4 31 31 H 1.07994 * 119.87817 * 180.02562 * 7 6 5 32 32 H 1.08000 * 119.97136 * 179.97438 * 10 8 7 33 33 H 1.09001 * 110.79175 * 78.08675 * 12 11 10 34 34 H 1.09001 * 110.90318 * 314.62123 * 12 11 10 35 35 H 0.96998 * 119.99255 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.4803 -1.9833 1.2897 6 6 0.2074 -2.3959 1.6798 7 6 -0.1157 -3.7367 1.6886 8 6 0.8221 -4.6826 1.3095 9 9 0.5011 -5.9949 1.3160 10 6 2.0893 -4.2798 0.9232 11 6 2.4162 -2.9397 0.9158 12 6 3.7075 -2.2195 0.5592 13 6 3.4932 -0.8174 1.1749 14 1 3.9362 -0.0468 0.5439 15 6 4.0585 -0.7528 2.5704 16 1 3.4019 -0.5880 3.4120 17 6 5.4139 -0.9039 2.7729 18 7 6.2135 -1.1050 1.7483 19 14 6.1144 -0.8246 4.5027 20 1 6.4744 0.5792 4.8272 21 1 7.3268 -1.6782 4.5855 22 1 5.0992 -1.3116 5.4709 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 -0.5284 -1.6632 1.9764 31 1 -1.1038 -4.0501 1.9915 32 1 2.8226 -5.0156 0.6275 33 1 3.8276 -2.1532 -0.5221 34 1 4.5663 -2.7128 1.0143 35 1 5.8496 -1.1466 0.8501 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260994983.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:07 Heat of formation + Delta-G solvation = -11.676685 kcal Electronic energy + Delta-G solvation = -18599.733086 eV Core-core repulsion = 15705.056433 eV Total energy + Delta-G solvation = -2894.676653 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.49142 -40.34099 -36.51246 -34.22546 -32.20851 -30.77202 -28.56278 -27.49243 -26.47457 -24.96678 -22.17779 -21.55144 -20.56344 -19.57449 -17.21282 -16.69594 -16.37756 -15.51839 -15.25805 -14.74321 -14.41001 -13.82741 -13.57145 -13.17823 -12.95285 -12.81021 -12.68078 -12.12004 -11.91233 -11.81665 -11.58818 -11.22259 -11.06438 -10.86345 -10.71833 -10.50712 -10.40854 -10.17587 -10.12327 -8.92188 -8.59440 -8.50867 -8.37022 -7.10340 -6.43413 -4.16321 1.61439 1.68465 3.41117 3.44969 3.61001 3.97266 4.30472 4.50737 4.65484 5.09014 5.20725 5.25728 5.32190 5.32822 5.61087 5.66911 5.76977 5.88504 5.93994 6.05383 6.12331 6.13277 6.24021 6.26739 6.34354 6.48209 6.50414 6.63240 6.63983 6.79585 6.95645 7.08678 7.31043 7.68102 7.95858 8.11662 8.48968 8.76125 9.52698 10.92722 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.017577 B = 0.009342 C = 0.006980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.605593 B = 2996.625327 C = 4010.416925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.080 3.920 3 C -0.142 4.142 4 N -0.479 5.479 5 C 0.110 3.890 6 C -0.099 4.099 7 C -0.148 4.148 8 C 0.066 3.934 9 F -0.149 7.149 10 C -0.131 4.131 11 C -0.089 4.089 12 C -0.116 4.116 13 C 0.204 3.796 14 H 0.047 0.953 15 C -0.574 4.574 16 H 0.060 0.940 17 C 0.020 3.980 18 N -0.912 5.912 19 Si 1.073 2.927 20 H -0.287 1.287 21 H -0.284 1.284 22 H -0.288 1.288 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.037 0.963 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.128 0.872 31 H 0.130 0.870 32 H 0.125 0.875 33 H 0.054 0.946 34 H 0.096 0.904 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.124 -0.978 -3.601 10.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.026 4.026 3 C -0.199 4.199 4 N -0.196 5.196 5 C 0.013 3.987 6 C -0.119 4.119 7 C -0.168 4.168 8 C 0.047 3.953 9 F -0.128 7.128 10 C -0.150 4.150 11 C -0.092 4.092 12 C -0.155 4.155 13 C 0.099 3.901 14 H 0.064 0.936 15 C -0.612 4.612 16 H 0.078 0.922 17 C -0.184 4.184 18 N -0.549 5.549 19 Si 0.901 3.099 20 H -0.214 1.214 21 H -0.210 1.210 22 H -0.214 1.214 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.146 0.854 31 H 0.148 0.852 32 H 0.143 0.857 33 H 0.072 0.928 34 H 0.114 0.886 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.861 -0.713 -2.321 9.187 hybrid contribution -1.203 -0.712 -1.444 2.010 sum -10.063 -1.425 -3.766 10.839 Atomic orbital electron populations 1.22076 0.95035 1.02159 1.01711 1.21580 0.95039 0.95251 0.90714 1.21864 1.01981 0.94804 1.01290 1.60354 1.10056 1.13617 1.35581 1.19686 0.93077 0.90272 0.95700 1.20314 0.95522 0.94557 1.01505 1.20698 0.99364 0.92354 1.04357 1.17371 0.94529 0.77496 1.05949 1.91430 1.93270 1.33276 1.94840 1.20301 0.95167 0.95921 1.03632 1.21231 0.98059 0.92620 0.97280 1.22251 0.94700 0.99891 0.98687 1.20477 0.80626 0.90899 0.98094 0.93584 1.21816 0.94613 1.53185 0.91616 0.92212 1.25800 0.93394 0.93629 1.05566 1.70813 1.38197 1.45886 0.99981 0.83475 0.75648 0.76862 0.73935 1.21353 1.21017 1.21394 0.92162 0.91877 0.92641 0.94535 0.91849 0.92928 0.91835 0.85437 0.85238 0.85660 0.92775 0.88585 0.91985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 8.31 37.16 0.31 -1.86 16 2 C 0.08 1.39 2.48 -67.72 -0.17 1.22 16 3 C -0.14 -2.29 9.16 37.16 0.34 -1.95 16 4 N -0.48 -10.03 4.59 -155.34 -0.71 -10.74 16 5 C 0.11 2.22 5.03 -83.35 -0.42 1.80 16 6 C -0.10 -1.69 7.89 -39.27 -0.31 -2.00 16 7 C -0.15 -2.37 10.00 -39.61 -0.40 -2.76 16 8 C 0.07 1.16 7.31 -39.40 -0.29 0.87 16 9 F -0.15 -2.51 17.27 2.25 0.04 -2.47 16 10 C -0.13 -2.46 10.01 -39.60 -0.40 -2.86 16 11 C -0.09 -1.86 6.24 -103.78 -0.65 -2.51 16 12 C -0.12 -2.63 5.49 -26.34 -0.14 -2.77 16 13 C 0.20 4.88 1.95 -67.45 -0.13 4.75 16 14 H 0.05 1.14 5.78 -51.93 -0.30 0.84 16 15 C -0.57 -15.56 8.82 -34.44 -0.30 -15.86 16 16 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 17 C 0.02 0.55 5.13 -17.82 -0.09 0.45 16 18 N -0.91 -25.94 13.00 55.43 0.72 -25.22 16 19 Si 1.07 24.81 29.90 -169.99 -5.08 19.73 16 20 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 23 H 0.06 0.86 5.54 -51.93 -0.29 0.57 16 24 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.04 0.65 8.10 -51.93 -0.42 0.23 16 27 H 0.06 1.14 6.29 -51.93 -0.33 0.81 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.13 1.90 7.42 -52.49 -0.39 1.51 16 31 H 0.13 1.68 8.06 -52.49 -0.42 1.25 16 32 H 0.13 2.17 8.06 -52.49 -0.42 1.75 16 33 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.10 2.40 6.54 -51.93 -0.34 2.06 16 35 H 0.27 7.48 6.10 -40.82 -0.25 7.23 16 LS Contribution 284.32 15.07 4.28 4.28 Total: -1.00 -28.44 284.32 -7.88 -36.32 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -4.48 Total: 1.59 kcal Atomic # 6 Polarization: -20.84 SS G_CDS: -2.65 Total: -23.49 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: 0.01 Total: -35.96 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.04 Total: -2.47 kcal Atomic # 14 Polarization: 24.81 SS G_CDS: -5.08 Total: 19.73 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -28.44 -7.88 -36.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260994983.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.641 kcal (2) G-P(sol) polarization free energy of solvation -28.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds