Wall clock time and date at job start Mon Mar 30 2020 06:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47431 * 2 1 4 4 N 1.46898 * 109.46989 * 120.00036 * 2 1 3 5 5 C 1.40190 * 111.00188 * 55.05448 * 4 2 1 6 6 C 1.39383 * 129.93452 * 283.44103 * 5 4 2 7 7 C 1.37922 * 120.23057 * 179.67869 * 6 5 4 8 8 C 1.38487 * 120.23951 * 359.97438 * 7 6 5 9 9 F 1.35099 * 120.08298 * 180.17032 * 8 7 6 10 10 C 1.38468 * 119.82906 * 0.14849 * 8 7 6 11 11 C 1.37945 * 120.06638 * 359.97438 * 10 8 7 12 12 C 1.52088 * 131.49151 * 179.33889 * 11 10 8 13 13 C 1.47911 * 110.99984 * 174.99760 * 4 2 1 14 14 H 1.09002 * 110.77654 * 23.96817 * 13 4 2 15 15 C 1.50703 * 110.77795 * 147.20718 * 13 4 2 16 16 H 1.08006 * 120.00159 * 357.40798 * 15 13 4 17 17 C 1.37877 * 120.00120 * 177.41168 * 15 13 4 18 18 N 1.31514 * 120.00089 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99938 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47297 * 269.99556 * 19 17 15 21 21 H 1.48503 * 109.47261 * 149.99737 * 19 17 15 22 22 H 1.48500 * 109.47454 * 29.99730 * 19 17 15 23 23 H 1.08994 * 109.47247 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47189 * 300.00675 * 1 2 3 25 25 H 1.09001 * 109.46940 * 59.99806 * 1 2 3 26 26 H 1.08998 * 109.47419 * 239.99725 * 2 1 3 27 27 H 1.08997 * 109.47467 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47217 * 300.00024 * 3 2 1 29 29 H 1.09003 * 109.47485 * 59.99506 * 3 2 1 30 30 H 1.07993 * 119.88188 * 359.66311 * 6 5 4 31 31 H 1.07994 * 119.87817 * 180.02562 * 7 6 5 32 32 H 1.08000 * 119.97136 * 179.97438 * 10 8 7 33 33 H 1.09001 * 110.79175 * 78.08675 * 12 11 10 34 34 H 1.09001 * 110.90318 * 314.62123 * 12 11 10 35 35 H 0.96998 * 119.99255 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.4803 -1.9833 1.2897 6 6 0.2074 -2.3959 1.6798 7 6 -0.1157 -3.7367 1.6886 8 6 0.8221 -4.6826 1.3095 9 9 0.5011 -5.9949 1.3160 10 6 2.0893 -4.2798 0.9232 11 6 2.4162 -2.9397 0.9158 12 6 3.7075 -2.2195 0.5592 13 6 3.4932 -0.8174 1.1749 14 1 3.9362 -0.0468 0.5439 15 6 4.0585 -0.7528 2.5704 16 1 3.4019 -0.5880 3.4120 17 6 5.4139 -0.9039 2.7729 18 7 6.2135 -1.1050 1.7483 19 14 6.1144 -0.8246 4.5027 20 1 6.4744 0.5792 4.8272 21 1 7.3268 -1.6782 4.5855 22 1 5.0992 -1.3116 5.4709 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 -0.5284 -1.6632 1.9764 31 1 -1.1038 -4.0501 1.9915 32 1 2.8226 -5.0156 0.6275 33 1 3.8276 -2.1532 -0.5221 34 1 4.5663 -2.7128 1.0143 35 1 5.8496 -1.1466 0.8501 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260994983.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:07 Heat of formation + Delta-G solvation = -27.038509 kcal Electronic energy + Delta-G solvation = -18600.399224 eV Core-core repulsion = 15705.056433 eV Total energy + Delta-G solvation = -2895.342792 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.84662 -41.88235 -37.96963 -35.92579 -33.96610 -32.20193 -30.11636 -29.06995 -27.77809 -26.91545 -23.73962 -23.05682 -22.15624 -21.03898 -19.17175 -18.11141 -17.82523 -17.00656 -16.66221 -16.26663 -15.94723 -15.58509 -15.04846 -14.69223 -14.47857 -14.40696 -14.14654 -13.67835 -13.48288 -13.13649 -13.02572 -12.76586 -12.51712 -12.44770 -12.42859 -12.15430 -11.98019 -11.82888 -11.64042 -10.79639 -10.54953 -10.16901 -9.88577 -8.73866 -8.52857 -6.33778 0.18117 0.26202 1.52372 1.60056 1.78197 2.52061 2.54869 2.84824 3.15992 3.22088 3.66074 3.91201 3.98259 4.04730 4.20719 4.25814 4.31440 4.40227 4.51302 4.54989 4.72205 4.79206 4.85906 4.92493 4.97059 5.06420 5.14748 5.20234 5.22813 5.30969 5.32682 5.52575 5.79397 5.91754 6.07648 6.37568 6.49505 6.63914 7.42225 8.76496 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.017577 B = 0.009342 C = 0.006980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.605593 B = 2996.625327 C = 4010.416925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.073 3.927 3 C -0.136 4.136 4 N -0.487 5.487 5 C 0.091 3.909 6 C -0.092 4.092 7 C -0.129 4.129 8 C 0.065 3.935 9 F -0.144 7.144 10 C -0.138 4.138 11 C -0.120 4.120 12 C -0.107 4.107 13 C 0.203 3.797 14 H 0.029 0.971 15 C -0.583 4.583 16 H 0.042 0.958 17 C -0.024 4.024 18 N -0.934 5.934 19 Si 1.113 2.887 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.279 1.279 23 H 0.061 0.939 24 H 0.067 0.933 25 H 0.082 0.918 26 H 0.027 0.973 27 H 0.034 0.966 28 H 0.085 0.915 29 H 0.060 0.940 30 H 0.155 0.845 31 H 0.171 0.829 32 H 0.130 0.870 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.703 -1.107 -3.140 13.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.033 4.033 3 C -0.194 4.194 4 N -0.205 5.205 5 C -0.006 4.006 6 C -0.111 4.111 7 C -0.148 4.148 8 C 0.046 3.954 9 F -0.123 7.123 10 C -0.158 4.158 11 C -0.123 4.123 12 C -0.146 4.146 13 C 0.097 3.903 14 H 0.047 0.953 15 C -0.621 4.621 16 H 0.061 0.939 17 C -0.223 4.223 18 N -0.571 5.571 19 Si 0.936 3.064 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.204 1.204 23 H 0.080 0.920 24 H 0.086 0.914 25 H 0.101 0.899 26 H 0.045 0.955 27 H 0.053 0.947 28 H 0.104 0.896 29 H 0.079 0.921 30 H 0.173 0.827 31 H 0.189 0.811 32 H 0.148 0.852 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.464 -0.839 -1.876 11.647 hybrid contribution -0.475 -0.707 -1.631 1.840 sum -11.939 -1.546 -3.508 12.539 Atomic orbital electron populations 1.22009 0.91977 1.02724 1.03276 1.21788 0.97463 0.95045 0.88960 1.21831 1.00104 0.94675 1.02777 1.60340 1.08062 1.14573 1.37491 1.19965 0.94380 0.89532 0.96709 1.20616 0.94559 0.95710 1.00253 1.21116 1.00541 0.91306 1.01830 1.17442 0.94229 0.78079 1.05699 1.91449 1.93108 1.32936 1.94764 1.20410 0.96337 0.95273 1.03767 1.21135 0.97440 0.93793 0.99950 1.21949 0.94829 0.99266 0.98564 1.20212 0.82967 0.90941 0.96170 0.95294 1.22025 0.94675 1.52786 0.92661 0.93948 1.27018 0.94141 0.92987 1.08111 1.70892 1.38490 1.47617 1.00108 0.82957 0.75262 0.77663 0.70540 1.19738 1.20917 1.20420 0.92018 0.91419 0.89943 0.95538 0.94724 0.89584 0.92101 0.82701 0.81147 0.85193 0.92345 0.91918 0.92801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.63 8.31 71.98 0.60 -3.03 16 2 C 0.07 2.47 2.48 44.91 0.11 2.58 16 3 C -0.14 -4.34 9.16 71.98 0.66 -3.68 16 4 N -0.49 -20.44 4.59 -645.39 -2.96 -23.40 16 5 C 0.09 3.59 5.03 38.25 0.19 3.79 16 6 C -0.09 -2.83 7.89 22.47 0.18 -2.66 16 7 C -0.13 -3.60 10.00 22.25 0.22 -3.38 16 8 C 0.07 2.11 7.31 22.38 0.16 2.28 16 9 F -0.14 -4.44 17.27 44.97 0.78 -3.66 16 10 C -0.14 -5.14 10.01 22.26 0.22 -4.92 16 11 C -0.12 -5.07 6.24 -19.32 -0.12 -5.19 16 12 C -0.11 -5.06 5.49 30.85 0.17 -4.89 16 13 C 0.20 10.08 1.95 44.53 0.09 10.17 16 14 H 0.03 1.53 5.78 -2.39 -0.01 1.51 16 15 C -0.58 -32.61 8.82 25.60 0.23 -32.38 16 16 H 0.04 2.46 7.81 -2.91 -0.02 2.44 16 17 C -0.02 -1.33 5.13 84.65 0.43 -0.90 16 18 N -0.93 -54.97 13.00 21.45 0.28 -54.69 16 19 Si 1.11 50.53 29.90 68.60 2.05 52.58 16 20 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 21 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 22 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 23 H 0.06 1.55 5.54 -2.39 -0.01 1.54 16 24 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.03 0.94 8.10 -2.39 -0.02 0.93 16 27 H 0.03 1.28 6.29 -2.39 -0.02 1.26 16 28 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.16 3.94 7.42 -2.91 -0.02 3.92 16 31 H 0.17 3.40 8.06 -2.91 -0.02 3.38 16 32 H 0.13 4.53 8.06 -2.91 -0.02 4.51 16 33 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.06 3.33 6.54 -2.39 -0.02 3.31 16 35 H 0.26 15.32 6.10 -92.71 -0.57 14.76 16 Total: -1.00 -62.89 284.32 4.58 -58.31 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 1.29 Total: 13.07 kcal Atomic # 6 Polarization: -45.35 SS G_CDS: 3.14 Total: -42.20 kcal Atomic # 7 Polarization: -75.41 SS G_CDS: -2.68 Total: -78.09 kcal Atomic # 9 Polarization: -4.44 SS G_CDS: 0.78 Total: -3.66 kcal Atomic # 14 Polarization: 50.53 SS G_CDS: 2.05 Total: 52.58 kcal Total: -62.89 4.58 -58.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260994983.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.270 kcal (2) G-P(sol) polarization free energy of solvation -62.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds