Wall clock time and date at job start Mon Mar 30 2020 06:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47015 * 2 1 4 4 N 1.46905 * 109.47172 * 120.00276 * 2 1 3 5 5 C 1.47911 * 110.99825 * 296.59627 * 4 2 1 6 6 C 1.54594 * 102.62338 * 149.10756 * 5 4 2 7 7 H 1.08999 * 110.73065 * 92.79186 * 6 5 4 8 8 C 1.50697 * 110.73556 * 216.10418 * 6 5 4 9 9 H 1.08002 * 119.99692 * 88.17907 * 8 6 5 10 10 C 1.37877 * 120.00108 * 268.18015 * 8 6 5 11 11 N 1.31515 * 119.99696 * 5.18340 * 10 8 6 12 12 Si 1.86800 * 120.00075 * 185.17873 * 10 8 6 13 13 H 1.48506 * 109.46984 * 60.00317 * 12 10 8 14 14 H 1.48504 * 109.47298 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47296 * 300.00406 * 12 10 8 16 16 C 1.51582 * 102.86185 * 334.44978 * 6 5 4 17 17 C 1.37941 * 131.52853 * 196.31526 * 16 6 5 18 18 C 1.38477 * 120.06029 * 179.33484 * 17 16 6 19 19 F 1.35106 * 120.08414 * 179.97438 * 18 17 16 20 20 C 1.38478 * 119.83418 * 359.97438 * 18 17 16 21 21 C 1.37921 * 120.23645 * 0.37961 * 20 18 17 22 22 C 1.38933 * 107.96734 * 15.92834 * 16 6 5 23 23 H 1.08997 * 109.46925 * 295.66651 * 1 2 3 24 24 H 1.08999 * 109.47269 * 55.66671 * 1 2 3 25 25 H 1.09005 * 109.46903 * 175.66418 * 1 2 3 26 26 H 1.09005 * 109.47151 * 240.00190 * 2 1 3 27 27 H 1.09005 * 109.47267 * 179.97438 * 3 2 1 28 28 H 1.08991 * 109.47757 * 300.00073 * 3 2 1 29 29 H 1.09002 * 109.47056 * 60.00615 * 3 2 1 30 30 H 1.08995 * 110.78002 * 267.39286 * 5 4 2 31 31 H 1.09003 * 110.77625 * 30.63941 * 5 4 2 32 32 H 0.97002 * 119.99743 * 179.97438 * 11 10 8 33 33 H 1.08002 * 119.96819 * 359.30831 * 17 16 6 34 34 H 1.08007 * 119.88382 * 180.10293 * 20 18 17 35 35 H 1.07997 * 119.88986 * 179.73802 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 1.6135 0.0238 2.4281 6 6 1.4664 -1.1227 3.4547 7 1 2.3952 -1.2681 4.0063 8 6 0.3215 -0.8520 4.3964 9 1 -0.6767 -1.1744 4.1394 10 6 0.5484 -0.1929 5.5860 11 7 1.7424 0.2894 5.8531 12 14 -0.8402 0.0152 6.8181 13 1 -1.3347 -1.3210 7.2369 14 1 -0.3414 0.7537 8.0060 15 1 -1.9485 0.7787 6.1905 16 6 1.1687 -2.3236 2.5790 17 6 0.6528 -3.5676 2.8773 18 6 0.4630 -4.4995 1.8708 19 9 -0.0418 -5.7182 2.1625 20 6 0.7919 -4.1790 0.5643 21 6 1.3148 -2.9386 0.2640 22 6 1.5066 -1.9953 1.2720 23 1 -0.3633 0.4451 0.9262 24 1 -0.3634 0.5796 -0.8486 25 1 -0.3633 -1.0248 -0.0777 26 1 1.8934 -0.5138 -0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 1.9563 0.8901 30 1 2.3870 0.7255 2.7402 31 1 0.6639 0.5381 2.2798 32 1 1.9019 0.7534 6.6899 33 1 0.3970 -3.8152 3.8970 34 1 0.6427 -4.9046 -0.2216 35 1 1.5733 -2.6961 -0.7561 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261027800.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:27 Heat of formation + Delta-G solvation = -30.355709 kcal Electronic energy + Delta-G solvation = -18490.287414 eV Core-core repulsion = 15594.800777 eV Total energy + Delta-G solvation = -2895.486636 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.72597 -41.77280 -37.89597 -35.83553 -33.90568 -32.10137 -29.92269 -29.33474 -27.95670 -26.62423 -23.97024 -23.16758 -22.05224 -20.44106 -18.72310 -17.97291 -17.45390 -17.12460 -16.53757 -16.44621 -16.22824 -15.39790 -15.29580 -14.52975 -14.40585 -14.21105 -13.94236 -13.77485 -13.36439 -13.19091 -12.92165 -12.72767 -12.65112 -12.57341 -12.35753 -12.18169 -11.93331 -11.68616 -11.40394 -11.20133 -10.66665 -10.48335 -9.75410 -8.49550 -8.16584 -6.31637 0.32180 0.44731 1.39081 1.40684 1.48372 2.37919 2.62861 3.02863 3.10178 3.40363 3.76062 3.97094 4.09408 4.16411 4.30111 4.39925 4.46077 4.51765 4.59746 4.74663 4.78744 4.86256 4.93574 5.02537 5.06288 5.19693 5.28377 5.35090 5.37295 5.41895 5.52327 5.66334 5.73433 5.79698 6.16907 6.24386 6.43753 6.79027 7.36155 8.87700 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.015868 B = 0.009909 C = 0.006738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.122879 B = 2825.052533 C = 4154.271812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.067 3.933 3 C -0.143 4.143 4 N -0.480 5.480 5 C 0.073 3.927 6 C 0.068 3.932 7 H 0.033 0.967 8 C -0.523 4.523 9 H 0.050 0.950 10 C 0.022 3.978 11 N -0.917 5.917 12 Si 0.952 3.048 13 H -0.273 1.273 14 H -0.281 1.281 15 H -0.269 1.269 16 C -0.105 4.105 17 C -0.129 4.129 18 C 0.050 3.950 19 F -0.150 7.150 20 C -0.127 4.127 21 C -0.110 4.110 22 C 0.080 3.920 23 H 0.040 0.960 24 H 0.087 0.913 25 H 0.053 0.947 26 H 0.104 0.896 27 H 0.060 0.940 28 H 0.087 0.913 29 H 0.042 0.958 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.265 0.735 33 H 0.114 0.886 34 H 0.167 0.833 35 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.567 -2.154 -13.186 13.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.039 4.039 3 C -0.200 4.200 4 N -0.193 5.193 5 C -0.053 4.053 6 C 0.049 3.951 7 H 0.051 0.949 8 C -0.561 4.561 9 H 0.068 0.932 10 C -0.178 4.178 11 N -0.555 5.555 12 Si 0.777 3.223 13 H -0.199 1.199 14 H -0.207 1.207 15 H -0.194 1.194 16 C -0.108 4.108 17 C -0.149 4.149 18 C 0.029 3.971 19 F -0.129 7.129 20 C -0.146 4.146 21 C -0.131 4.131 22 C -0.019 4.019 23 H 0.059 0.941 24 H 0.105 0.895 25 H 0.072 0.928 26 H 0.122 0.878 27 H 0.080 0.920 28 H 0.106 0.894 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.132 0.868 34 H 0.185 0.815 35 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.892 -1.985 -13.094 13.274 hybrid contribution -1.268 0.036 1.582 2.028 sum -2.161 -1.949 -11.513 11.875 Atomic orbital electron populations 1.22443 0.96587 1.02389 1.02432 1.22024 0.93587 0.96036 0.92241 1.21856 1.01660 0.94031 1.02475 1.60935 1.53149 1.00325 1.04939 1.23201 0.98256 0.97094 0.86778 1.18545 0.96625 0.87779 0.92131 0.94872 1.21110 0.93945 1.37437 1.03620 0.93185 1.25721 0.97823 0.94722 0.99572 1.70042 1.22849 1.37405 1.25239 0.85699 0.79643 0.78380 0.78532 1.19864 1.20658 1.19376 1.21029 0.98022 0.95669 0.96112 1.20360 1.02219 0.93073 0.99205 1.17539 1.03885 0.81068 0.94560 1.91421 1.85623 1.41424 1.94438 1.21001 1.01177 0.98026 0.94425 1.20482 1.02069 0.91773 0.98795 1.19974 0.95025 0.92789 0.94073 0.94128 0.89459 0.92760 0.87787 0.92044 0.89374 0.93908 0.91926 0.92873 0.92566 0.86775 0.81535 0.82401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.97 8.60 71.98 0.62 -4.36 16 2 C 0.07 1.87 2.77 44.91 0.12 1.99 16 3 C -0.14 -3.58 9.03 71.98 0.65 -2.93 16 4 N -0.48 -17.72 5.11 -664.73 -3.40 -21.12 16 5 C 0.07 3.22 4.78 86.65 0.41 3.64 16 6 C 0.07 3.47 2.99 -11.46 -0.03 3.43 16 7 H 0.03 1.93 7.66 -2.39 -0.02 1.92 16 8 C -0.52 -28.54 8.21 25.60 0.21 -28.33 16 9 H 0.05 2.74 7.82 -2.91 -0.02 2.72 16 10 C 0.02 1.19 5.45 84.65 0.46 1.65 16 11 N -0.92 -52.59 12.99 21.45 0.28 -52.31 16 12 Si 0.95 43.19 29.54 68.60 2.03 45.22 16 13 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 14 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 15 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 16 C -0.11 -4.69 5.65 -19.49 -0.11 -4.80 16 17 C -0.13 -5.42 9.85 22.26 0.22 -5.20 16 18 C 0.05 1.75 7.31 22.38 0.16 1.92 16 19 F -0.15 -5.19 17.27 44.97 0.78 -4.41 16 20 C -0.13 -3.65 10.00 22.25 0.22 -3.43 16 21 C -0.11 -3.23 8.60 22.47 0.19 -3.04 16 22 C 0.08 3.00 4.83 38.24 0.18 3.18 16 23 H 0.04 1.34 6.02 -2.39 -0.01 1.33 16 24 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.05 1.55 6.57 -2.38 -0.02 1.53 16 26 H 0.10 2.39 7.48 -2.38 -0.02 2.37 16 27 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 28 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.04 1.24 6.96 -2.39 -0.02 1.22 16 30 H 0.06 2.93 8.13 -2.39 -0.02 2.91 16 31 H 0.05 2.39 5.31 -2.39 -0.01 2.37 16 32 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 33 H 0.11 5.01 8.06 -2.91 -0.02 4.99 16 34 H 0.17 3.46 8.06 -2.91 -0.02 3.43 16 35 H 0.16 3.43 7.48 -2.91 -0.02 3.41 16 Total: -1.00 -60.47 286.58 4.09 -56.38 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: 1.09 Total: 12.51 kcal Atomic # 6 Polarization: -39.60 SS G_CDS: 3.32 Total: -36.28 kcal Atomic # 7 Polarization: -70.30 SS G_CDS: -3.12 Total: -73.42 kcal Atomic # 9 Polarization: -5.19 SS G_CDS: 0.78 Total: -4.41 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -60.47 4.09 -56.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261027800.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.029 kcal (2) G-P(sol) polarization free energy of solvation -60.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds