Wall clock time and date at job start Mon Mar 30 2020 06:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38221 * 120.00813 * 2 1 4 4 C 1.38230 * 120.01866 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.97039 * 180.27489 * 4 3 2 6 6 H 1.09000 * 110.27357 * 0.36107 * 5 4 3 7 7 C 1.54598 * 110.30825 * 238.27222 * 5 4 3 8 8 C 1.54937 * 102.92263 * 219.12684 * 7 5 4 9 9 N 1.48537 * 103.22514 * 37.41093 * 8 7 5 10 10 C 1.47903 * 105.82317 * 320.79680 * 9 8 7 11 11 H 1.08994 * 109.91902 * 144.67901 * 10 9 8 12 12 C 1.50698 * 109.91554 * 265.97763 * 10 9 8 13 13 H 1.08003 * 120.00441 * 117.58493 * 12 10 9 14 14 C 1.37875 * 120.00203 * 297.58880 * 12 10 9 15 15 N 1.31524 * 119.99915 * 359.97438 * 14 12 10 16 16 Si 1.86805 * 120.00515 * 180.02562 * 14 12 10 17 17 H 1.48492 * 109.46889 * 59.99728 * 16 14 12 18 18 H 1.48493 * 109.47128 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.46796 * 299.99612 * 16 14 12 20 20 C 1.38265 * 120.05232 * 359.97438 * 4 3 2 21 21 C 1.38170 * 120.02652 * 0.02562 * 20 4 3 22 22 C 1.38437 * 120.01415 * 179.97438 * 2 1 3 23 23 F 1.35096 * 120.02231 * 0.04009 * 22 2 1 24 24 H 1.09000 * 109.46966 * 270.02483 * 1 2 3 25 25 H 1.08997 * 109.47168 * 30.02283 * 1 2 3 26 26 H 1.08997 * 109.46656 * 150.02213 * 1 2 3 27 27 H 1.07993 * 119.99337 * 359.97438 * 3 2 1 28 28 H 1.09000 * 110.72254 * 337.48212 * 7 5 4 29 29 H 1.09000 * 110.72447 * 100.59050 * 7 5 4 30 30 H 1.08990 * 110.67184 * 155.84878 * 8 7 5 31 31 H 1.09007 * 110.66603 * 278.81400 * 8 7 5 32 32 H 1.00900 * 111.00125 * 200.28415 * 9 8 7 33 33 H 0.96996 * 119.99775 * 180.02562 * 15 14 12 34 34 H 1.07999 * 119.98131 * 179.97438 * 20 4 3 35 35 H 1.08001 * 120.01158 * 180.02562 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1969 0.0000 4 6 3.5807 1.1972 0.0005 5 6 4.3332 2.5028 0.0068 6 1 3.6360 3.3406 0.0168 7 6 5.2623 2.5925 -1.2256 8 6 6.5358 3.2626 -0.6515 9 7 6.6538 2.6639 0.7027 10 6 5.2730 2.5722 1.2248 11 1 5.1637 1.6721 1.8297 12 6 4.9542 3.7920 2.0503 13 1 4.1612 4.4586 1.7449 14 6 5.6749 4.0571 3.1954 15 7 6.6403 3.2451 3.5676 16 14 5.2793 5.5687 4.2191 17 1 3.8730 5.4937 4.6897 18 1 6.1904 5.6256 5.3904 19 1 5.4600 6.7882 3.3913 20 6 4.2733 0.0005 0.0016 21 6 3.5843 -1.1971 0.0016 22 6 2.1996 -1.1987 0.0005 23 9 1.5248 -2.3691 0.0002 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8897 -0.5142 26 1 -0.3632 -0.8902 -0.5135 27 1 1.6584 2.1322 -0.0004 28 1 5.4896 1.5984 -1.6105 29 1 4.8139 3.2120 -2.0024 30 1 7.4070 3.0163 -1.2583 31 1 6.4064 4.3431 -0.5873 32 1 7.2296 3.2359 1.3021 33 1 7.1470 3.4314 4.3734 34 1 5.3533 0.0021 0.0016 35 1 4.1256 -2.1317 0.0029 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261042002.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:25 Heat of formation + Delta-G solvation = -34.942555 kcal Electronic energy + Delta-G solvation = -18065.902484 eV Core-core repulsion = 15170.216947 eV Total energy + Delta-G solvation = -2895.685537 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.60180 -39.30086 -37.05647 -32.86663 -32.37761 -31.15242 -28.42612 -27.64634 -26.57458 -24.39544 -22.21160 -21.43739 -20.30805 -18.72254 -17.22678 -16.77571 -15.95594 -15.39673 -15.35749 -14.85716 -14.26252 -14.01779 -13.29225 -13.16866 -13.04088 -12.87875 -12.46855 -12.18172 -11.97003 -11.56300 -11.50010 -11.27974 -10.85920 -10.77050 -10.62234 -10.57707 -10.37220 -10.06883 -9.75226 -9.43390 -8.60390 -8.51772 -7.95090 -7.07196 -6.07252 -4.22533 1.55109 1.60202 3.24073 3.30131 3.32010 3.95679 4.33333 4.59251 4.95627 5.02621 5.13426 5.27181 5.50267 5.53488 5.67152 5.72163 5.75726 5.81081 5.92528 5.97935 6.18358 6.27935 6.39835 6.43363 6.52911 6.58648 6.63577 6.69275 6.78238 6.90652 7.16298 7.31207 7.69041 7.82112 8.08305 8.33105 8.85245 9.01432 9.45932 10.92879 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.024258 B = 0.006455 C = 0.005846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.001373 B = 4336.866860 C = 4788.126939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.124 4.124 3 C -0.096 4.096 4 C -0.050 4.050 5 C -0.061 4.061 6 H 0.075 0.925 7 C -0.112 4.112 8 C 0.039 3.961 9 N -0.668 5.668 10 C 0.210 3.790 11 H 0.049 0.951 12 C -0.551 4.551 13 H 0.055 0.945 14 C 0.068 3.932 15 N -0.880 5.880 16 Si 0.890 3.110 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.277 1.277 20 C -0.084 4.084 21 C -0.151 4.151 22 C 0.073 3.927 23 F -0.148 7.148 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.127 0.873 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.029 0.971 32 H 0.352 0.648 33 H 0.265 0.735 34 H 0.138 0.862 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.579 -4.552 -7.987 11.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.125 4.125 3 C -0.114 4.114 4 C -0.051 4.051 5 C -0.080 4.080 6 H 0.093 0.907 7 C -0.150 4.150 8 C -0.091 4.091 9 N -0.300 5.300 10 C 0.102 3.898 11 H 0.067 0.933 12 C -0.590 4.590 13 H 0.073 0.927 14 C -0.135 4.135 15 N -0.518 5.518 16 Si 0.717 3.283 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.203 1.203 20 C -0.102 4.102 21 C -0.169 4.169 22 C 0.054 3.946 23 F -0.127 7.127 24 H 0.089 0.911 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.145 0.855 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.047 0.953 32 H 0.171 0.829 33 H 0.075 0.925 34 H 0.156 0.844 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.380 -5.339 -8.036 11.566 hybrid contribution -0.535 1.616 0.980 1.965 sum -6.915 -3.722 -7.056 10.557 Atomic orbital electron populations 1.20668 0.90793 1.02667 1.02476 1.19815 0.96496 0.92053 1.04095 1.20857 0.93765 0.96676 1.00070 1.20139 0.93106 0.95866 0.95953 1.21325 0.97070 0.92371 0.97242 0.90709 1.22540 0.95949 1.00251 0.96273 1.22830 0.95960 0.96390 0.93941 1.63451 1.13587 1.50944 1.02031 1.19800 0.83836 0.96991 0.89153 0.93338 1.21765 1.18665 1.09626 1.08948 0.92716 1.25049 0.95007 0.96510 0.96971 1.69915 1.20952 1.36309 1.24612 0.86697 0.78419 0.83319 0.79835 1.20196 1.21138 1.20282 1.21011 1.00954 0.90642 0.97614 1.21072 0.92012 0.99667 1.04197 1.17468 0.90083 0.80582 1.06455 1.91417 1.80570 1.46368 1.94366 0.91139 0.91281 0.91704 0.85500 0.91747 0.92707 0.92551 0.95300 0.82940 0.92549 0.84375 0.85322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 9.84 36.01 0.35 -0.98 16 2 C -0.12 -1.91 5.89 -104.55 -0.62 -2.52 16 3 C -0.10 -1.57 9.33 -39.59 -0.37 -1.94 16 4 C -0.05 -0.91 4.73 -104.62 -0.49 -1.41 16 5 C -0.06 -1.21 2.84 -90.42 -0.26 -1.46 16 6 H 0.07 1.50 7.17 -51.93 -0.37 1.13 16 7 C -0.11 -1.98 6.51 -24.87 -0.16 -2.14 16 8 C 0.04 0.76 7.53 -1.90 -0.01 0.75 16 9 N -0.67 -15.45 7.32 -104.34 -0.76 -16.21 16 10 C 0.21 5.03 2.65 -67.80 -0.18 4.85 16 11 H 0.05 1.31 7.26 -51.93 -0.38 0.94 16 12 C -0.55 -14.51 8.61 -34.44 -0.30 -14.81 16 13 H 0.05 1.43 7.33 -52.48 -0.38 1.05 16 14 C 0.07 1.83 5.11 -17.82 -0.09 1.74 16 15 N -0.88 -24.36 12.07 55.43 0.67 -23.69 16 16 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 18 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 C -0.08 -1.47 8.08 -39.60 -0.32 -1.79 16 21 C -0.15 -2.40 10.03 -39.52 -0.40 -2.79 16 22 C 0.07 1.17 7.24 -39.42 -0.29 0.89 16 23 F -0.15 -2.31 16.48 2.25 0.04 -2.28 16 24 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 26 H 0.06 0.74 7.64 -51.93 -0.40 0.35 16 27 H 0.13 1.89 7.97 -52.49 -0.42 1.47 16 28 H 0.06 1.08 7.03 -51.93 -0.36 0.72 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.03 0.58 8.14 -51.92 -0.42 0.16 16 32 H 0.35 8.92 6.88 -39.29 -0.27 8.65 16 33 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 34 H 0.14 2.45 7.83 -52.49 -0.41 2.04 16 35 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 291.23 15.07 4.39 4.39 Total: -1.00 -27.26 291.23 -8.48 -35.74 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -4.66 Total: 8.01 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: -3.13 Total: -21.62 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: -0.10 Total: -39.90 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.04 Total: -2.28 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -27.26 -8.48 -35.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261042002.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.800 kcal (2) G-P(sol) polarization free energy of solvation -27.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds