Wall clock time and date at job start Mon Mar 30 2020 06:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38221 * 120.00813 * 2 1 4 4 C 1.38230 * 120.01866 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.97039 * 180.27489 * 4 3 2 6 6 H 1.09000 * 110.27357 * 0.36107 * 5 4 3 7 7 C 1.54598 * 110.30825 * 238.27222 * 5 4 3 8 8 C 1.54937 * 102.92263 * 219.12684 * 7 5 4 9 9 N 1.48537 * 103.22514 * 37.41093 * 8 7 5 10 10 C 1.47903 * 105.82317 * 320.79680 * 9 8 7 11 11 H 1.08994 * 109.91902 * 144.67901 * 10 9 8 12 12 C 1.50698 * 109.91554 * 265.97763 * 10 9 8 13 13 H 1.08003 * 120.00441 * 117.58493 * 12 10 9 14 14 C 1.37875 * 120.00203 * 297.58880 * 12 10 9 15 15 N 1.31524 * 119.99915 * 359.97438 * 14 12 10 16 16 Si 1.86805 * 120.00515 * 180.02562 * 14 12 10 17 17 H 1.48492 * 109.46889 * 59.99728 * 16 14 12 18 18 H 1.48493 * 109.47128 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.46796 * 299.99612 * 16 14 12 20 20 C 1.38265 * 120.05232 * 359.97438 * 4 3 2 21 21 C 1.38170 * 120.02652 * 0.02562 * 20 4 3 22 22 C 1.38437 * 120.01415 * 179.97438 * 2 1 3 23 23 F 1.35096 * 120.02231 * 0.04009 * 22 2 1 24 24 H 1.09000 * 109.46966 * 270.02483 * 1 2 3 25 25 H 1.08997 * 109.47168 * 30.02283 * 1 2 3 26 26 H 1.08997 * 109.46656 * 150.02213 * 1 2 3 27 27 H 1.07993 * 119.99337 * 359.97438 * 3 2 1 28 28 H 1.09000 * 110.72254 * 337.48212 * 7 5 4 29 29 H 1.09000 * 110.72447 * 100.59050 * 7 5 4 30 30 H 1.08990 * 110.67184 * 155.84878 * 8 7 5 31 31 H 1.09007 * 110.66603 * 278.81400 * 8 7 5 32 32 H 1.00900 * 111.00125 * 200.28415 * 9 8 7 33 33 H 0.96996 * 119.99775 * 180.02562 * 15 14 12 34 34 H 1.07999 * 119.98131 * 179.97438 * 20 4 3 35 35 H 1.08001 * 120.01158 * 180.02562 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1969 0.0000 4 6 3.5807 1.1972 0.0005 5 6 4.3332 2.5028 0.0068 6 1 3.6360 3.3406 0.0168 7 6 5.2623 2.5925 -1.2256 8 6 6.5358 3.2626 -0.6515 9 7 6.6538 2.6639 0.7027 10 6 5.2730 2.5722 1.2248 11 1 5.1637 1.6721 1.8297 12 6 4.9542 3.7920 2.0503 13 1 4.1612 4.4586 1.7449 14 6 5.6749 4.0571 3.1954 15 7 6.6403 3.2451 3.5676 16 14 5.2793 5.5687 4.2191 17 1 3.8730 5.4937 4.6897 18 1 6.1904 5.6256 5.3904 19 1 5.4600 6.7882 3.3913 20 6 4.2733 0.0005 0.0016 21 6 3.5843 -1.1971 0.0016 22 6 2.1996 -1.1987 0.0005 23 9 1.5248 -2.3691 0.0002 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8897 -0.5142 26 1 -0.3632 -0.8902 -0.5135 27 1 1.6584 2.1322 -0.0004 28 1 5.4896 1.5984 -1.6105 29 1 4.8139 3.2120 -2.0024 30 1 7.4070 3.0163 -1.2583 31 1 6.4064 4.3431 -0.5873 32 1 7.2296 3.2359 1.3021 33 1 7.1470 3.4314 4.3734 34 1 5.3533 0.0021 0.0016 35 1 4.1256 -2.1317 0.0029 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261042002.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:24 Heat of formation + Delta-G solvation = -49.989652 kcal Electronic energy + Delta-G solvation = -18066.554975 eV Core-core repulsion = 15170.216947 eV Total energy + Delta-G solvation = -2896.338028 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.84336 -40.69498 -38.61041 -34.65341 -33.77949 -32.57952 -30.16354 -29.16691 -27.77901 -26.23283 -23.49025 -22.87021 -21.96828 -20.24629 -18.69818 -18.43313 -17.38110 -16.98463 -16.62490 -16.51156 -16.04233 -15.31677 -14.67652 -14.41036 -14.33135 -14.18147 -14.06972 -13.59475 -13.25260 -13.13959 -13.02440 -12.96753 -12.58033 -12.41039 -12.25370 -12.08337 -11.92117 -11.69824 -11.36189 -11.17253 -10.61624 -9.78799 -9.29286 -8.93251 -8.08868 -6.32219 0.24579 0.33499 1.39246 1.40413 1.47836 2.38777 2.65449 3.10496 3.33958 3.74512 3.84524 3.92368 3.98784 4.18807 4.34193 4.41068 4.46112 4.55890 4.71786 4.76542 4.80681 4.89300 5.00011 5.08585 5.11138 5.23567 5.25091 5.31415 5.37962 5.42164 5.63047 5.77726 5.85073 6.03220 6.12228 6.51642 6.84944 7.06795 7.39744 8.88685 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.024258 B = 0.006455 C = 0.005846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.001373 B = 4336.866860 C = 4788.126939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.121 4.121 3 C -0.101 4.101 4 C -0.068 4.068 5 C -0.054 4.054 6 H 0.070 0.930 7 C -0.103 4.103 8 C 0.037 3.963 9 N -0.677 5.677 10 C 0.211 3.789 11 H 0.008 0.992 12 C -0.566 4.566 13 H 0.052 0.948 14 C 0.023 3.977 15 N -0.908 5.908 16 Si 0.950 3.050 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.271 1.271 20 C -0.096 4.096 21 C -0.150 4.150 22 C 0.065 3.935 23 F -0.145 7.145 24 H 0.077 0.923 25 H 0.087 0.913 26 H 0.073 0.927 27 H 0.142 0.858 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.022 0.978 32 H 0.336 0.664 33 H 0.264 0.736 34 H 0.128 0.872 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.928 -4.325 -8.927 12.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.122 4.122 3 C -0.119 4.119 4 C -0.068 4.068 5 C -0.073 4.073 6 H 0.088 0.912 7 C -0.140 4.140 8 C -0.092 4.092 9 N -0.307 5.307 10 C 0.103 3.897 11 H 0.026 0.974 12 C -0.605 4.605 13 H 0.070 0.930 14 C -0.178 4.178 15 N -0.546 5.546 16 Si 0.776 3.224 17 H -0.200 1.200 18 H -0.210 1.210 19 H -0.196 1.196 20 C -0.114 4.114 21 C -0.168 4.168 22 C 0.046 3.954 23 F -0.124 7.124 24 H 0.096 0.904 25 H 0.106 0.894 26 H 0.092 0.908 27 H 0.159 0.841 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.040 0.960 32 H 0.152 0.848 33 H 0.073 0.927 34 H 0.145 0.855 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.740 -5.116 -8.997 12.924 hybrid contribution -0.126 1.488 1.265 1.957 sum -7.865 -3.627 -7.732 11.611 Atomic orbital electron populations 1.20758 0.88340 1.04096 1.03356 1.20155 0.98315 0.91312 1.02421 1.21025 0.93138 0.97829 0.99896 1.20097 0.93979 0.95188 0.97562 1.21131 0.96605 0.93325 0.96277 0.91158 1.22524 0.94460 1.01118 0.95928 1.22952 0.97997 0.95987 0.92300 1.63367 1.12872 1.51168 1.03295 1.19626 0.85380 0.94247 0.90427 0.97417 1.22111 1.18443 1.10350 1.09582 0.92957 1.25754 0.94911 0.99063 0.98096 1.70036 1.21808 1.37852 1.24948 0.85738 0.78069 0.80255 0.78335 1.19982 1.20957 1.19589 1.20943 1.00541 0.91196 0.98732 1.21245 0.92345 0.99922 1.03322 1.17616 0.90220 0.81030 1.06488 1.91426 1.80435 1.46171 1.94333 0.90389 0.89379 0.90838 0.84059 0.90814 0.90040 0.90346 0.95986 0.84787 0.92675 0.85453 0.83406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.35 9.84 71.24 0.70 -1.65 16 2 C -0.12 -3.49 5.89 -19.82 -0.12 -3.61 16 3 C -0.10 -3.17 9.33 22.26 0.21 -2.96 16 4 C -0.07 -2.43 4.73 -19.86 -0.09 -2.53 16 5 C -0.05 -2.13 2.84 -10.66 -0.03 -2.16 16 6 H 0.07 2.78 7.17 -2.39 -0.02 2.76 16 7 C -0.10 -3.47 6.51 31.80 0.21 -3.26 16 8 C 0.04 1.42 7.53 86.65 0.65 2.08 16 9 N -0.68 -31.82 7.32 -484.03 -3.54 -35.36 16 10 C 0.21 10.36 2.65 44.31 0.12 10.47 16 11 H 0.01 0.45 7.26 -2.39 -0.02 0.43 16 12 C -0.57 -30.22 8.61 25.60 0.22 -30.00 16 13 H 0.05 2.75 7.33 -2.91 -0.02 2.73 16 14 C 0.02 1.23 5.11 84.65 0.43 1.67 16 15 N -0.91 -51.35 12.07 21.45 0.26 -51.09 16 16 Si 0.95 42.61 29.54 68.60 2.03 44.63 16 17 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 18 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 19 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 20 C -0.10 -3.33 8.08 22.26 0.18 -3.15 16 21 C -0.15 -4.62 10.03 22.31 0.22 -4.40 16 22 C 0.07 1.99 7.24 22.37 0.16 2.15 16 23 F -0.14 -4.22 16.48 44.97 0.74 -3.48 16 24 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.09 1.57 8.09 -2.39 -0.02 1.55 16 26 H 0.07 1.47 7.64 -2.39 -0.02 1.45 16 27 H 0.14 3.93 7.97 -2.91 -0.02 3.91 16 28 H 0.07 2.36 7.03 -2.39 -0.02 2.34 16 29 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 31 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.34 17.47 6.88 -89.69 -0.62 16.85 16 33 H 0.26 14.29 8.31 -92.71 -0.77 13.51 16 34 H 0.13 4.62 7.83 -2.91 -0.02 4.60 16 35 H 0.15 3.86 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -58.49 291.23 2.82 -55.67 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: 0.48 Total: 26.97 kcal Atomic # 6 Polarization: -40.21 SS G_CDS: 2.86 Total: -37.34 kcal Atomic # 7 Polarization: -83.16 SS G_CDS: -3.29 Total: -86.45 kcal Atomic # 9 Polarization: -4.22 SS G_CDS: 0.74 Total: -3.48 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Total: -58.49 2.82 -55.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261042002.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.683 kcal (2) G-P(sol) polarization free energy of solvation -58.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds