Wall clock time and date at job start Mon Mar 30 2020 06:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38227 * 120.01272 * 2 1 4 4 C 1.38226 * 120.02285 * 179.97438 * 3 2 1 5 5 C 1.50695 * 119.97083 * 179.97438 * 4 3 2 6 6 H 1.08999 * 110.27736 * 359.36047 * 5 4 3 7 7 C 1.54601 * 110.30933 * 121.45665 * 5 4 3 8 8 C 1.54939 * 102.92246 * 140.87291 * 7 5 4 9 9 N 1.48533 * 103.22419 * 322.58350 * 8 7 5 10 10 C 1.47899 * 105.82394 * 39.21056 * 9 8 7 11 11 H 1.09002 * 109.91883 * 215.31685 * 10 9 8 12 12 C 1.50705 * 109.91928 * 94.01976 * 10 9 8 13 13 H 1.07999 * 119.99825 * 245.36501 * 12 10 9 14 14 C 1.37874 * 119.99795 * 65.35816 * 12 10 9 15 15 N 1.31511 * 120.00191 * 8.52944 * 14 12 10 16 16 Si 1.86798 * 119.99907 * 188.52452 * 14 12 10 17 17 H 1.48497 * 109.47378 * 94.98845 * 16 14 12 18 18 H 1.48506 * 109.46940 * 214.99254 * 16 14 12 19 19 H 1.48506 * 109.47024 * 334.98865 * 16 14 12 20 20 C 1.38271 * 120.05315 * 0.25157 * 4 3 2 21 21 C 1.38179 * 120.02142 * 359.49398 * 20 4 3 22 22 C 1.38439 * 120.01562 * 179.97438 * 2 1 3 23 23 F 1.35103 * 120.01896 * 0.02562 * 22 2 1 24 24 H 1.08999 * 109.46985 * 89.99772 * 1 2 3 25 25 H 1.08999 * 109.47094 * 210.00325 * 1 2 3 26 26 H 1.09005 * 109.47329 * 330.00495 * 1 2 3 27 27 H 1.08000 * 119.98676 * 359.95587 * 3 2 1 28 28 H 1.09000 * 110.72493 * 22.51013 * 7 5 4 29 29 H 1.09003 * 110.71753 * 259.22785 * 7 5 4 30 30 H 1.09000 * 110.66336 * 204.15320 * 8 7 5 31 31 H 1.08999 * 110.66865 * 81.01751 * 8 7 5 32 32 H 1.00909 * 110.99655 * 159.72563 * 9 8 7 33 33 H 0.96998 * 120.00243 * 180.02562 * 15 14 12 34 34 H 1.07998 * 119.98799 * 179.74021 * 20 4 3 35 35 H 1.07999 * 120.01039 * 180.23049 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1969 0.0000 4 6 3.5806 1.1972 0.0005 5 6 4.3332 2.5027 0.0000 6 1 3.6361 3.3406 -0.0123 7 6 5.2562 2.5906 1.2371 8 6 6.5325 3.2616 0.6701 9 7 6.6571 2.6648 -0.6843 10 6 5.2790 2.5739 -1.2133 11 1 5.1727 1.6748 -1.8202 12 6 4.9643 3.7950 -2.0386 13 1 4.2021 4.4865 -1.7109 14 6 5.6495 4.0294 -3.2119 15 7 6.4547 3.1102 -3.6980 16 14 5.4340 5.6525 -4.1110 17 1 6.5139 6.5888 -3.7081 18 1 5.5018 5.4195 -5.5761 19 1 4.1148 6.2394 -3.7637 20 6 4.2733 0.0005 -0.0042 21 6 3.5842 -1.1972 0.0011 22 6 2.1995 -1.1987 0.0005 23 9 1.5247 -2.3692 0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3634 0.8901 0.5138 27 1 1.6584 2.1322 -0.0007 28 1 5.4816 1.5959 1.6216 29 1 4.8054 3.2116 2.0112 30 1 7.4008 3.0142 1.2809 31 1 6.4024 4.3418 0.6041 32 1 7.2361 3.2377 -1.2800 33 1 6.9370 3.2753 -4.5232 34 1 5.3533 0.0019 -0.0080 35 1 4.1254 -2.1318 0.0012 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261042004.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:30 Heat of formation + Delta-G solvation = -35.428713 kcal Electronic energy + Delta-G solvation = -18061.356535 eV Core-core repulsion = 15165.649916 eV Total energy + Delta-G solvation = -2895.706618 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.59296 -39.29785 -37.06702 -32.84689 -32.39022 -31.17095 -28.46906 -27.64322 -26.56829 -24.39103 -22.20437 -21.44168 -20.34520 -18.72876 -17.22038 -16.77080 -15.95205 -15.39165 -15.36802 -14.85001 -14.28418 -14.01866 -13.28925 -13.17975 -13.04032 -12.87230 -12.46372 -12.18403 -11.97907 -11.58302 -11.51952 -11.28398 -10.91312 -10.77920 -10.60648 -10.59253 -10.36795 -10.07410 -9.75768 -9.41410 -8.57778 -8.51471 -7.94275 -7.12084 -6.08958 -4.21363 1.55879 1.61022 3.22235 3.30971 3.33254 3.96388 4.33482 4.60016 4.96365 5.03248 5.12964 5.27602 5.50388 5.52078 5.67795 5.72400 5.74400 5.80831 5.92698 5.96528 6.15693 6.26867 6.38913 6.42695 6.52933 6.58391 6.61045 6.69731 6.77161 6.88852 7.16455 7.31888 7.71013 7.82048 8.08400 8.29569 8.82623 8.94290 9.46044 10.92759 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.024617 B = 0.006412 C = 0.005852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.168116 B = 4366.090146 C = 4783.539007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.124 4.124 3 C -0.095 4.095 4 C -0.050 4.050 5 C -0.061 4.061 6 H 0.075 0.925 7 C -0.112 4.112 8 C 0.039 3.961 9 N -0.669 5.669 10 C 0.208 3.792 11 H 0.054 0.946 12 C -0.552 4.552 13 H 0.055 0.945 14 C 0.070 3.930 15 N -0.876 5.876 16 Si 0.887 3.113 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.274 1.274 20 C -0.084 4.084 21 C -0.151 4.151 22 C 0.073 3.927 23 F -0.148 7.148 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.127 0.873 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.030 0.970 32 H 0.344 0.656 33 H 0.263 0.737 34 H 0.138 0.862 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.252 -4.339 8.283 11.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.125 4.125 3 C -0.113 4.113 4 C -0.050 4.050 5 C -0.080 4.080 6 H 0.093 0.907 7 C -0.150 4.150 8 C -0.091 4.091 9 N -0.299 5.299 10 C 0.100 3.900 11 H 0.072 0.928 12 C -0.591 4.591 13 H 0.073 0.927 14 C -0.134 4.134 15 N -0.513 5.513 16 Si 0.714 3.286 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.199 1.199 20 C -0.102 4.102 21 C -0.170 4.170 22 C 0.054 3.946 23 F -0.127 7.127 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.145 0.855 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.048 0.952 32 H 0.161 0.839 33 H 0.073 0.927 34 H 0.156 0.844 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.081 -5.145 8.328 11.524 hybrid contribution -0.409 1.684 -0.929 1.967 sum -6.490 -3.460 7.399 10.432 Atomic orbital electron populations 1.20666 0.90798 1.02657 1.02480 1.19813 0.96493 0.92052 1.04100 1.20856 0.93765 0.96675 1.00048 1.20126 0.93106 0.95833 0.95971 1.21321 0.97106 0.92426 0.97136 0.90696 1.22544 0.95907 1.00248 0.96324 1.22839 0.96051 0.96446 0.93793 1.63507 1.13700 1.50653 1.02053 1.19829 0.83529 0.97416 0.89191 0.92799 1.21769 1.21704 1.08503 1.07124 0.92658 1.25031 0.95330 0.96479 0.96569 1.69996 1.28269 1.32211 1.20803 0.86668 0.78540 0.84262 0.79089 1.20625 1.21117 1.19895 1.21010 1.00939 0.90643 0.97596 1.21071 0.92012 0.99662 1.04206 1.17469 0.90083 0.80581 1.06447 1.91419 1.80568 1.46370 1.94368 0.91135 0.91708 0.91285 0.85503 0.91701 0.92662 0.92482 0.95195 0.83882 0.92687 0.84392 0.85329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 9.84 36.00 0.35 -0.99 16 2 C -0.12 -1.91 5.89 -104.55 -0.62 -2.53 16 3 C -0.10 -1.57 9.33 -39.59 -0.37 -1.94 16 4 C -0.05 -0.91 4.73 -104.62 -0.49 -1.40 16 5 C -0.06 -1.20 2.84 -90.41 -0.26 -1.46 16 6 H 0.07 1.50 7.17 -51.93 -0.37 1.13 16 7 C -0.11 -1.96 6.51 -24.87 -0.16 -2.12 16 8 C 0.04 0.74 7.53 -1.90 -0.01 0.73 16 9 N -0.67 -15.22 7.37 -104.33 -0.77 -15.99 16 10 C 0.21 4.96 2.56 -67.79 -0.17 4.79 16 11 H 0.05 1.46 7.24 -51.93 -0.38 1.09 16 12 C -0.55 -14.50 8.55 -34.44 -0.29 -14.80 16 13 H 0.06 1.45 7.35 -52.49 -0.39 1.07 16 14 C 0.07 1.88 4.97 -17.82 -0.09 1.79 16 15 N -0.88 -24.35 12.72 55.43 0.70 -23.65 16 16 Si 0.89 20.61 29.55 -169.99 -5.02 15.59 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 18 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 20 C -0.08 -1.47 8.07 -39.59 -0.32 -1.79 16 21 C -0.15 -2.41 10.03 -39.52 -0.40 -2.81 16 22 C 0.07 1.18 7.24 -39.42 -0.29 0.89 16 23 F -0.15 -2.32 16.48 2.25 0.04 -2.29 16 24 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.06 0.75 7.64 -51.93 -0.40 0.35 16 26 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 27 H 0.13 1.90 7.97 -52.49 -0.42 1.48 16 28 H 0.06 1.08 7.05 -51.93 -0.37 0.71 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.34 8.54 7.44 -39.29 -0.29 8.25 16 33 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 34 H 0.14 2.46 7.84 -52.49 -0.41 2.04 16 35 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 292.24 15.07 4.40 4.40 Total: -1.00 -27.36 292.24 -8.45 -35.81 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -4.69 Total: 7.76 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: -3.12 Total: -21.64 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: -0.06 Total: -39.63 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.04 Total: -2.29 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -27.36 -8.45 -35.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261042004.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.376 kcal (2) G-P(sol) polarization free energy of solvation -27.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds