Wall clock time and date at job start Mon Mar 30 2020 06:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38227 * 120.01272 * 2 1 4 4 C 1.38226 * 120.02285 * 179.97438 * 3 2 1 5 5 C 1.50695 * 119.97083 * 179.97438 * 4 3 2 6 6 H 1.08999 * 110.27736 * 359.36047 * 5 4 3 7 7 C 1.54601 * 110.30933 * 121.45665 * 5 4 3 8 8 C 1.54939 * 102.92246 * 140.87291 * 7 5 4 9 9 N 1.48533 * 103.22419 * 322.58350 * 8 7 5 10 10 C 1.47899 * 105.82394 * 39.21056 * 9 8 7 11 11 H 1.09002 * 109.91883 * 215.31685 * 10 9 8 12 12 C 1.50705 * 109.91928 * 94.01976 * 10 9 8 13 13 H 1.07999 * 119.99825 * 245.36501 * 12 10 9 14 14 C 1.37874 * 119.99795 * 65.35816 * 12 10 9 15 15 N 1.31511 * 120.00191 * 8.52944 * 14 12 10 16 16 Si 1.86798 * 119.99907 * 188.52452 * 14 12 10 17 17 H 1.48497 * 109.47378 * 94.98845 * 16 14 12 18 18 H 1.48506 * 109.46940 * 214.99254 * 16 14 12 19 19 H 1.48506 * 109.47024 * 334.98865 * 16 14 12 20 20 C 1.38271 * 120.05315 * 0.25157 * 4 3 2 21 21 C 1.38179 * 120.02142 * 359.49398 * 20 4 3 22 22 C 1.38439 * 120.01562 * 179.97438 * 2 1 3 23 23 F 1.35103 * 120.01896 * 0.02562 * 22 2 1 24 24 H 1.08999 * 109.46985 * 89.99772 * 1 2 3 25 25 H 1.08999 * 109.47094 * 210.00325 * 1 2 3 26 26 H 1.09005 * 109.47329 * 330.00495 * 1 2 3 27 27 H 1.08000 * 119.98676 * 359.95587 * 3 2 1 28 28 H 1.09000 * 110.72493 * 22.51013 * 7 5 4 29 29 H 1.09003 * 110.71753 * 259.22785 * 7 5 4 30 30 H 1.09000 * 110.66336 * 204.15320 * 8 7 5 31 31 H 1.08999 * 110.66865 * 81.01751 * 8 7 5 32 32 H 1.00909 * 110.99655 * 159.72563 * 9 8 7 33 33 H 0.96998 * 120.00243 * 180.02562 * 15 14 12 34 34 H 1.07998 * 119.98799 * 179.74021 * 20 4 3 35 35 H 1.07999 * 120.01039 * 180.23049 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1969 0.0000 4 6 3.5806 1.1972 0.0005 5 6 4.3332 2.5027 0.0000 6 1 3.6361 3.3406 -0.0123 7 6 5.2562 2.5906 1.2371 8 6 6.5325 3.2616 0.6701 9 7 6.6571 2.6648 -0.6843 10 6 5.2790 2.5739 -1.2133 11 1 5.1727 1.6748 -1.8202 12 6 4.9643 3.7950 -2.0386 13 1 4.2021 4.4865 -1.7109 14 6 5.6495 4.0294 -3.2119 15 7 6.4547 3.1102 -3.6980 16 14 5.4340 5.6525 -4.1110 17 1 6.5139 6.5888 -3.7081 18 1 5.5018 5.4195 -5.5761 19 1 4.1148 6.2394 -3.7637 20 6 4.2733 0.0005 -0.0042 21 6 3.5842 -1.1972 0.0011 22 6 2.1995 -1.1987 0.0005 23 9 1.5247 -2.3692 0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3634 0.8901 0.5138 27 1 1.6584 2.1322 -0.0007 28 1 5.4816 1.5959 1.6216 29 1 4.8054 3.2116 2.0112 30 1 7.4008 3.0142 1.2809 31 1 6.4024 4.3418 0.6041 32 1 7.2361 3.2377 -1.2800 33 1 6.9370 3.2753 -4.5232 34 1 5.3533 0.0019 -0.0080 35 1 4.1254 -2.1318 0.0012 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261042004.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:30 Heat of formation + Delta-G solvation = -50.681752 kcal Electronic energy + Delta-G solvation = -18062.017956 eV Core-core repulsion = 15165.649916 eV Total energy + Delta-G solvation = -2896.368040 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.84077 -40.69373 -38.61234 -34.64459 -33.79330 -32.59311 -30.18696 -29.16487 -27.77804 -26.22790 -23.48927 -22.87591 -21.98656 -20.24879 -18.69669 -18.43016 -17.38269 -16.99034 -16.62312 -16.48552 -16.07386 -15.32124 -14.69339 -14.40825 -14.33148 -14.17384 -14.07075 -13.59785 -13.31144 -13.13935 -13.02261 -12.95368 -12.61856 -12.40976 -12.26738 -12.06217 -11.91913 -11.69869 -11.35257 -11.15349 -10.60648 -9.78590 -9.29019 -8.96094 -8.10976 -6.31118 0.24822 0.33666 1.37546 1.40353 1.49241 2.38805 2.65609 3.10104 3.34105 3.74710 3.84601 3.92245 3.97429 4.17818 4.33305 4.40756 4.45932 4.54732 4.71767 4.76520 4.80757 4.89628 4.99843 5.08193 5.11039 5.23619 5.25140 5.31478 5.37894 5.42221 5.63789 5.77700 5.86026 6.03473 6.12937 6.50478 6.82201 7.01743 7.39753 8.88757 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.024617 B = 0.006412 C = 0.005852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.168116 B = 4366.090146 C = 4783.539007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.121 4.121 3 C -0.101 4.101 4 C -0.068 4.068 5 C -0.054 4.054 6 H 0.070 0.930 7 C -0.103 4.103 8 C 0.038 3.962 9 N -0.677 5.677 10 C 0.210 3.790 11 H 0.012 0.988 12 C -0.565 4.565 13 H 0.052 0.948 14 C 0.025 3.975 15 N -0.906 5.906 16 Si 0.948 3.052 17 H -0.274 1.274 18 H -0.286 1.286 19 H -0.270 1.270 20 C -0.096 4.096 21 C -0.150 4.150 22 C 0.065 3.935 23 F -0.145 7.145 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.141 0.859 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.024 0.976 32 H 0.328 0.672 33 H 0.263 0.737 34 H 0.128 0.872 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.464 -4.024 9.323 12.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.122 4.122 3 C -0.119 4.119 4 C -0.068 4.068 5 C -0.074 4.074 6 H 0.088 0.912 7 C -0.141 4.141 8 C -0.092 4.092 9 N -0.305 5.305 10 C 0.102 3.898 11 H 0.030 0.970 12 C -0.604 4.604 13 H 0.070 0.930 14 C -0.176 4.176 15 N -0.545 5.545 16 Si 0.774 3.226 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.195 1.195 20 C -0.114 4.114 21 C -0.168 4.168 22 C 0.046 3.954 23 F -0.124 7.124 24 H 0.096 0.904 25 H 0.092 0.908 26 H 0.106 0.894 27 H 0.159 0.841 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.043 0.957 32 H 0.144 0.856 33 H 0.072 0.928 34 H 0.146 0.854 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.303 -4.831 9.389 12.838 hybrid contribution -0.048 1.528 -1.245 1.971 sum -7.351 -3.303 8.144 11.458 Atomic orbital electron populations 1.20757 0.88346 1.04097 1.03347 1.20153 0.98314 0.91315 1.02428 1.21025 0.93162 0.97816 0.99914 1.20097 0.93974 0.95207 0.97529 1.21134 0.96633 0.93301 0.96301 0.91201 1.22531 0.94484 1.01124 0.95915 1.22966 0.98015 0.96124 0.92096 1.63418 1.12840 1.50913 1.03338 1.19636 0.85169 0.94571 0.90405 0.97020 1.22100 1.21432 1.09217 1.07647 0.93020 1.25726 0.95152 0.99313 0.97430 1.70112 1.29241 1.33891 1.21215 0.85706 0.78607 0.80600 0.77694 1.19965 1.21168 1.19477 1.20945 1.00538 0.91194 0.98715 1.21247 0.92344 0.99927 1.03330 1.17618 0.90223 0.81029 1.06502 1.91427 1.80434 1.46172 1.94338 0.90408 0.90826 0.89377 0.84094 0.90809 0.89995 0.90196 0.95714 0.85647 0.92762 0.85447 0.83411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.37 9.84 71.23 0.70 -1.67 16 2 C -0.12 -3.52 5.89 -19.82 -0.12 -3.64 16 3 C -0.10 -3.20 9.33 22.26 0.21 -3.00 16 4 C -0.07 -2.43 4.73 -19.86 -0.09 -2.53 16 5 C -0.05 -2.13 2.84 -10.66 -0.03 -2.16 16 6 H 0.07 2.77 7.17 -2.39 -0.02 2.75 16 7 C -0.10 -3.43 6.51 31.80 0.21 -3.23 16 8 C 0.04 1.40 7.53 86.65 0.65 2.05 16 9 N -0.68 -31.23 7.37 -484.01 -3.57 -34.80 16 10 C 0.21 10.24 2.56 44.32 0.11 10.36 16 11 H 0.01 0.67 7.24 -2.39 -0.02 0.65 16 12 C -0.56 -30.09 8.55 25.60 0.22 -29.87 16 13 H 0.05 2.72 7.35 -2.91 -0.02 2.70 16 14 C 0.03 1.36 4.97 84.65 0.42 1.79 16 15 N -0.91 -51.55 12.72 21.45 0.27 -51.27 16 16 Si 0.95 42.54 29.55 68.60 2.03 44.56 16 17 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 18 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 20 C -0.10 -3.34 8.07 22.26 0.18 -3.16 16 21 C -0.15 -4.65 10.03 22.31 0.22 -4.43 16 22 C 0.07 2.00 7.24 22.37 0.16 2.16 16 23 F -0.14 -4.25 16.48 44.97 0.74 -3.51 16 24 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.07 1.48 7.64 -2.39 -0.02 1.46 16 26 H 0.09 1.59 8.09 -2.38 -0.02 1.57 16 27 H 0.14 3.96 7.97 -2.91 -0.02 3.94 16 28 H 0.07 2.34 7.05 -2.39 -0.02 2.32 16 29 H 0.08 2.31 8.14 -2.39 -0.02 2.30 16 30 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 31 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.33 16.71 7.44 -89.69 -0.67 16.04 16 33 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 34 H 0.13 4.64 7.84 -2.91 -0.02 4.61 16 35 H 0.15 3.89 8.06 -2.91 -0.02 3.86 16 Total: -1.00 -58.73 292.24 2.75 -55.98 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: 0.43 Total: 26.37 kcal Atomic # 6 Polarization: -40.18 SS G_CDS: 2.85 Total: -37.33 kcal Atomic # 7 Polarization: -82.78 SS G_CDS: -3.29 Total: -86.07 kcal Atomic # 9 Polarization: -4.25 SS G_CDS: 0.74 Total: -3.51 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Total: -58.73 2.75 -55.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261042004.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.301 kcal (2) G-P(sol) polarization free energy of solvation -58.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds