Wall clock time and date at job start Mon Mar 30 2020 06:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38219 * 120.01387 * 2 1 4 4 C 1.38221 * 120.02728 * 179.97438 * 3 2 1 5 5 C 1.50706 * 119.97151 * 180.02562 * 4 3 2 6 6 H 1.08997 * 110.62669 * 329.24919 * 5 4 3 7 7 C 1.55147 * 110.70219 * 206.14604 * 5 4 3 8 8 C 1.54899 * 101.65197 * 205.96403 * 7 5 4 9 9 N 1.47849 * 104.79822 * 37.07082 * 8 7 5 10 10 C 1.47737 * 108.59703 * 335.75205 * 9 8 7 11 11 H 1.08995 * 110.06507 * 241.80566 * 10 9 8 12 12 C 1.50698 * 109.85306 * 120.52536 * 10 9 8 13 13 H 1.07996 * 119.99877 * 247.97568 * 12 10 9 14 14 C 1.37874 * 120.00172 * 67.98113 * 12 10 9 15 15 N 1.31523 * 120.00003 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 120.00308 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.46753 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47095 * 120.00100 * 16 14 12 19 19 H 1.48499 * 109.47549 * 240.00282 * 16 14 12 20 20 C 1.38262 * 120.05445 * 0.02562 * 4 3 2 21 21 C 1.38178 * 120.02418 * 359.95457 * 20 4 3 22 22 C 1.38434 * 120.01496 * 179.72297 * 2 1 3 23 23 F 1.35101 * 120.02454 * 0.02562 * 22 2 1 24 24 H 1.09000 * 109.47099 * 89.99990 * 1 2 3 25 25 H 1.08997 * 109.46890 * 329.99933 * 1 2 3 26 26 H 1.08999 * 109.46682 * 209.99701 * 1 2 3 27 27 H 1.07999 * 119.98414 * 359.97438 * 3 2 1 28 28 H 1.08993 * 110.99267 * 324.05704 * 7 5 4 29 29 H 1.09002 * 110.98663 * 87.84040 * 7 5 4 30 30 H 1.08999 * 110.37547 * 155.90332 * 8 7 5 31 31 H 1.09007 * 110.37361 * 278.13241 * 8 7 5 32 32 H 1.00890 * 111.00065 * 213.63650 * 9 8 7 33 33 H 0.96996 * 119.99906 * 179.97438 * 15 14 12 34 34 H 1.08001 * 119.99096 * 179.97438 * 20 4 3 35 35 H 1.07995 * 120.01431 * 180.02562 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1968 0.0000 4 6 3.5806 1.1972 0.0005 5 6 4.3332 2.5029 0.0011 6 1 3.7656 3.2734 -0.5205 7 6 5.7361 2.3276 -0.6379 8 6 6.5343 3.4675 0.0424 9 7 6.0202 3.5139 1.4278 10 6 4.6566 2.9456 1.4436 11 1 3.9407 3.7002 1.7692 12 6 4.6084 1.7563 2.3679 13 1 4.4608 0.7652 1.9653 14 6 4.7528 1.9336 3.7275 15 7 4.9330 3.1406 4.2179 16 14 4.6924 0.4595 4.8734 17 1 4.4816 -0.7770 4.0784 18 1 5.9741 0.3573 5.6164 19 1 3.5741 0.6262 5.8361 20 6 4.2734 0.0006 0.0005 21 6 3.5844 -1.1972 0.0009 22 6 2.1995 -1.1987 0.0058 23 9 1.5248 -2.3691 0.0109 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 0.8900 0.5138 26 1 -0.3633 -0.8900 0.5138 27 1 1.6584 2.1321 -0.0004 28 1 6.1587 1.3538 -0.3911 29 1 5.6938 2.4704 -1.7177 30 1 7.5999 3.2381 0.0405 31 1 6.3500 4.4148 -0.4645 32 1 6.0198 4.4586 1.7819 33 1 5.0342 3.2654 5.1744 34 1 5.3534 0.0021 0.0005 35 1 4.1256 -2.1317 0.0014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261042006.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:34 Heat of formation + Delta-G solvation = -35.369744 kcal Electronic energy + Delta-G solvation = -18464.940282 eV Core-core repulsion = 15569.236220 eV Total energy + Delta-G solvation = -2895.704061 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.78634 -40.77736 -38.47261 -34.35518 -33.92438 -32.55776 -30.17402 -29.06786 -27.63712 -26.28849 -23.55157 -22.91659 -21.69775 -20.33231 -18.58070 -18.18093 -17.43050 -16.96447 -16.58471 -16.43804 -16.17525 -15.31688 -14.47535 -14.44674 -14.33653 -14.15825 -14.02461 -13.85661 -13.41272 -13.07435 -12.97644 -12.86669 -12.79002 -12.34129 -12.09391 -12.04708 -11.71776 -11.44221 -11.15318 -10.99808 -10.46910 -9.67060 -9.17967 -8.62591 -7.96555 -6.03200 0.36525 0.43341 1.38070 1.42618 1.50903 2.49656 2.75121 3.28696 3.42106 3.75847 3.84681 3.94866 4.10829 4.14624 4.34517 4.42920 4.48851 4.50517 4.72199 4.75583 4.78481 4.87387 4.97030 5.08901 5.14169 5.25729 5.29965 5.32598 5.38497 5.48835 5.51876 5.83276 5.95337 6.12299 6.39397 6.65330 7.03689 7.16103 7.65099 9.11290 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.017605 B = 0.009752 C = 0.007468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.076094 B = 2870.570032 C = 3748.279982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.123 4.123 3 C -0.105 4.105 4 C -0.032 4.032 5 C -0.069 4.069 6 H 0.077 0.923 7 C -0.113 4.113 8 C 0.043 3.957 9 N -0.679 5.679 10 C 0.217 3.783 11 H -0.012 1.012 12 C -0.500 4.500 13 H 0.072 0.928 14 C 0.027 3.973 15 N -0.912 5.912 16 Si 0.928 3.072 17 H -0.270 1.270 18 H -0.287 1.287 19 H -0.288 1.288 20 C -0.095 4.095 21 C -0.157 4.157 22 C 0.055 3.945 23 F -0.149 7.149 24 H 0.088 0.912 25 H 0.079 0.921 26 H 0.065 0.935 27 H 0.136 0.864 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.039 0.961 32 H 0.316 0.684 33 H 0.252 0.748 34 H 0.136 0.864 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.182 -3.819 -11.327 12.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.124 4.124 3 C -0.123 4.123 4 C -0.032 4.032 5 C -0.088 4.088 6 H 0.095 0.905 7 C -0.151 4.151 8 C -0.087 4.087 9 N -0.308 5.308 10 C 0.110 3.890 11 H 0.005 0.995 12 C -0.539 4.539 13 H 0.090 0.910 14 C -0.172 4.172 15 N -0.553 5.553 16 Si 0.756 3.244 17 H -0.195 1.195 18 H -0.214 1.214 19 H -0.214 1.214 20 C -0.113 4.113 21 C -0.175 4.175 22 C 0.036 3.964 23 F -0.128 7.128 24 H 0.106 0.894 25 H 0.098 0.902 26 H 0.084 0.916 27 H 0.154 0.846 28 H 0.091 0.909 29 H 0.107 0.893 30 H 0.085 0.915 31 H 0.057 0.943 32 H 0.130 0.870 33 H 0.061 0.939 34 H 0.153 0.847 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.859 -4.365 -10.947 12.401 hybrid contribution -0.417 -0.005 0.913 1.004 sum -4.276 -4.370 -10.034 11.750 Atomic orbital electron populations 1.20732 0.88725 1.03474 1.03512 1.20091 0.98107 0.91481 1.02699 1.20873 0.93521 0.97421 1.00457 1.19628 0.93506 0.94925 0.95174 1.21464 0.95880 0.93797 0.97699 0.90508 1.22776 0.93613 0.99353 0.99341 1.22858 0.99252 0.97100 0.89445 1.62292 1.25461 1.24089 1.19001 1.19616 0.85578 0.93404 0.90366 0.99459 1.21782 1.46561 0.94385 0.91129 0.90993 1.25529 0.95154 0.96713 0.99814 1.70057 1.51070 1.21992 1.12154 0.85977 0.76994 0.81688 0.79757 1.19484 1.21385 1.21431 1.21016 1.00668 0.91052 0.98568 1.21230 0.92329 1.00048 1.03921 1.17629 0.90374 0.80943 1.07428 1.91404 1.80548 1.46362 1.94487 0.89386 0.90196 0.91613 0.84625 0.90948 0.89338 0.91515 0.94258 0.86961 0.93905 0.84664 0.83859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.66 9.84 71.24 0.70 -1.96 16 2 C -0.12 -3.92 5.89 -19.82 -0.12 -4.03 16 3 C -0.10 -3.52 9.38 22.26 0.21 -3.31 16 4 C -0.03 -1.15 3.70 -19.86 -0.07 -1.22 16 5 C -0.07 -2.54 3.08 -10.36 -0.03 -2.57 16 6 H 0.08 2.58 8.12 -2.39 -0.02 2.56 16 7 C -0.11 -3.64 6.27 31.98 0.20 -3.44 16 8 C 0.04 1.47 7.57 86.77 0.66 2.13 16 9 N -0.68 -30.58 6.82 -485.54 -3.31 -33.89 16 10 C 0.22 10.24 3.04 44.45 0.14 10.37 16 11 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 12 C -0.50 -26.25 8.02 25.60 0.21 -26.05 16 13 H 0.07 3.70 4.38 -2.91 -0.01 3.69 16 14 C 0.03 1.52 5.44 84.65 0.46 1.98 16 15 N -0.91 -53.10 13.13 21.45 0.28 -52.82 16 16 Si 0.93 44.98 29.54 68.60 2.03 47.00 16 17 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 18 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 19 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 20 C -0.10 -3.34 6.97 22.26 0.16 -3.19 16 21 C -0.16 -5.19 10.03 22.32 0.22 -4.97 16 22 C 0.06 1.85 7.24 22.38 0.16 2.02 16 23 F -0.15 -4.84 16.47 44.97 0.74 -4.10 16 24 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.08 1.81 8.09 -2.39 -0.02 1.79 16 26 H 0.06 1.61 7.63 -2.39 -0.02 1.59 16 27 H 0.14 4.11 8.06 -2.91 -0.02 4.09 16 28 H 0.07 2.41 5.56 -2.39 -0.01 2.40 16 29 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 32 H 0.32 14.46 8.91 -89.70 -0.80 13.66 16 33 H 0.25 14.22 8.31 -92.71 -0.77 13.44 16 34 H 0.14 4.61 5.76 -2.91 -0.02 4.59 16 35 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 Total: -1.00 -60.89 287.33 2.93 -57.96 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 0.31 Total: 20.08 kcal Atomic # 6 Polarization: -37.13 SS G_CDS: 2.89 Total: -34.24 kcal Atomic # 7 Polarization: -83.68 SS G_CDS: -3.03 Total: -86.71 kcal Atomic # 9 Polarization: -4.84 SS G_CDS: 0.74 Total: -4.10 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -60.89 2.93 -57.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261042006.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.593 kcal (2) G-P(sol) polarization free energy of solvation -60.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds