Wall clock time and date at job start Mon Mar 30 2020 06:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38216 * 120.01616 * 2 1 4 4 C 1.38216 * 120.02618 * 180.02562 * 3 2 1 5 5 C 1.50703 * 119.97771 * 179.97438 * 4 3 2 6 6 H 1.08998 * 110.76712 * 209.65526 * 5 4 3 7 7 C 1.55144 * 110.70131 * 332.85795 * 5 4 3 8 8 C 1.54910 * 101.65068 * 154.03683 * 7 5 4 9 9 N 1.47850 * 104.79503 * 322.92356 * 8 7 5 10 10 C 1.47446 * 108.56548 * 24.10222 * 9 8 7 11 11 H 1.08992 * 109.88709 * 118.57521 * 10 9 8 12 12 C 1.50699 * 109.88464 * 239.60234 * 10 9 8 13 13 H 1.08004 * 120.00174 * 114.71959 * 12 10 9 14 14 C 1.37879 * 119.99993 * 294.71881 * 12 10 9 15 15 N 1.31514 * 119.99976 * 0.02562 * 14 12 10 16 16 Si 1.86805 * 120.00055 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.46752 * 60.00178 * 16 14 12 18 18 H 1.48503 * 109.46886 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46998 * 300.00200 * 16 14 12 20 20 C 1.38273 * 120.05431 * 0.25499 * 4 3 2 21 21 C 1.38183 * 120.01818 * 359.45019 * 20 4 3 22 22 C 1.38438 * 120.00544 * 179.97438 * 2 1 3 23 23 F 1.35096 * 120.02954 * 0.04045 * 22 2 1 24 24 H 1.09002 * 109.47343 * 89.99403 * 1 2 3 25 25 H 1.08997 * 109.47449 * 209.99997 * 1 2 3 26 26 H 1.09005 * 109.46686 * 330.00067 * 1 2 3 27 27 H 1.08000 * 119.98622 * 359.97438 * 3 2 1 28 28 H 1.08996 * 110.99335 * 35.94034 * 7 5 4 29 29 H 1.09000 * 111.02017 * 272.13916 * 7 5 4 30 30 H 1.09003 * 110.36716 * 204.10145 * 8 7 5 31 31 H 1.09000 * 110.37451 * 81.75624 * 8 7 5 32 32 H 1.00900 * 110.99761 * 261.83031 * 9 8 7 33 33 H 0.97006 * 119.99975 * 179.97438 * 15 14 12 34 34 H 1.07994 * 119.99157 * 179.72325 * 20 4 3 35 35 H 1.07995 * 120.01048 * 180.26863 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1968 0.0000 4 6 3.5806 1.1970 -0.0005 5 6 4.3334 2.5026 -0.0011 6 1 5.2935 2.3949 -0.5057 7 6 3.4883 3.6226 -0.6631 8 6 4.0648 4.8911 0.0139 9 7 4.3421 4.4823 1.4075 10 6 4.5292 3.0201 1.4395 11 1 5.5341 2.7825 1.7881 12 6 3.5080 2.3926 2.3529 13 1 2.7557 1.7314 1.9486 14 6 3.5340 2.6625 3.7048 15 7 4.4496 3.4680 4.1970 16 14 2.2685 1.8840 4.8372 17 1 2.3825 0.4052 4.7643 18 1 2.5117 2.3307 6.2324 19 1 0.9060 2.2969 4.4150 20 6 4.2734 0.0003 -0.0064 21 6 3.5842 -1.1974 -0.0002 22 6 2.1994 -1.1988 0.0005 23 9 1.5246 -2.3692 0.0002 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8901 0.5139 27 1 1.6585 2.1321 -0.0004 28 1 2.4302 3.5025 -0.4307 29 1 3.6487 3.6482 -1.7409 30 1 3.3323 5.6981 -0.0062 31 1 4.9853 5.2004 -0.4811 32 1 3.5939 4.7648 2.0228 33 1 4.4677 3.6582 5.1480 34 1 5.3533 0.0017 -0.0113 35 1 4.1254 -2.1319 -0.0004 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261042007.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:38 Heat of formation + Delta-G solvation = -23.265335 kcal Electronic energy + Delta-G solvation = -18561.766737 eV Core-core repulsion = 15666.587562 eV Total energy + Delta-G solvation = -2895.179175 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.46339 -39.39745 -36.97883 -32.62904 -32.47442 -31.18766 -28.40698 -27.26187 -26.57647 -24.42307 -22.39437 -21.10203 -20.29869 -18.91903 -17.16379 -16.68358 -15.94817 -15.30272 -15.04768 -14.55020 -14.18758 -14.02975 -13.44237 -13.14057 -12.91568 -12.83792 -12.52029 -12.22599 -11.98230 -11.94687 -11.33943 -11.03329 -10.91219 -10.71171 -10.53070 -10.49499 -10.29819 -10.02590 -9.52620 -9.27972 -8.52730 -8.27880 -7.73433 -6.97596 -6.00749 -4.12732 1.72338 1.76380 3.28764 3.34431 3.38543 4.11321 4.40394 4.73876 5.07354 5.14371 5.18189 5.31233 5.51913 5.62483 5.70045 5.76346 5.79824 5.86259 6.00022 6.07699 6.17112 6.24375 6.35475 6.47883 6.49856 6.59594 6.64825 6.75218 6.84258 6.87825 7.20541 7.44840 7.73057 7.89937 8.09431 8.41948 8.96919 9.04553 9.56048 11.02564 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.017499 B = 0.010147 C = 0.007741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.674446 B = 2758.671413 C = 3616.252954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.125 4.125 3 C -0.081 4.081 4 C -0.016 4.016 5 C -0.072 4.072 6 H 0.067 0.933 7 C -0.146 4.146 8 C 0.044 3.956 9 N -0.670 5.670 10 C 0.219 3.781 11 H 0.047 0.953 12 C -0.552 4.552 13 H 0.072 0.928 14 C 0.075 3.925 15 N -0.868 5.868 16 Si 0.879 3.121 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C -0.100 4.100 21 C -0.149 4.149 22 C 0.068 3.932 23 F -0.151 7.151 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.131 0.869 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.056 0.944 32 H 0.342 0.658 33 H 0.261 0.739 34 H 0.125 0.875 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.931 -3.956 -9.222 10.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.125 4.125 3 C -0.098 4.098 4 C -0.017 4.017 5 C -0.092 4.092 6 H 0.086 0.914 7 C -0.185 4.185 8 C -0.086 4.086 9 N -0.300 5.300 10 C 0.112 3.888 11 H 0.064 0.936 12 C -0.590 4.590 13 H 0.090 0.910 14 C -0.130 4.130 15 N -0.504 5.504 16 Si 0.707 3.293 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.118 4.118 21 C -0.168 4.168 22 C 0.049 3.951 23 F -0.130 7.130 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.149 0.851 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.160 0.840 33 H 0.070 0.930 34 H 0.143 0.857 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.171 -3.728 -9.032 10.273 hybrid contribution -1.653 -1.045 0.782 2.106 sum -4.823 -4.773 -8.250 10.682 Atomic orbital electron populations 1.20663 0.91032 1.02965 1.01970 1.19800 0.96407 0.92122 1.04210 1.20804 0.93945 0.96562 0.98536 1.19607 0.93285 0.94832 0.93977 1.21579 0.96333 0.90685 1.00579 0.91438 1.23262 1.00002 0.96673 0.98574 1.22804 0.97855 0.95390 0.92560 1.62136 1.48439 1.15770 1.03636 1.19711 0.97648 0.83758 0.87677 0.93554 1.21850 1.15202 1.29753 0.92234 0.91012 1.25026 0.95204 0.94602 0.98166 1.70045 1.32802 1.34397 1.13180 0.86867 0.82244 0.80123 0.80101 1.20213 1.21308 1.20259 1.20766 0.99823 0.91052 1.00202 1.20927 0.92052 0.99315 1.04491 1.17417 0.90055 0.80533 1.07128 1.91401 1.80624 1.46461 1.94477 0.91478 0.91740 0.91171 0.85136 0.91284 0.92685 0.93521 0.92545 0.84002 0.92958 0.85695 0.85692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.57 9.84 36.01 0.35 -1.22 16 2 C -0.12 -2.16 5.89 -104.55 -0.62 -2.77 16 3 C -0.08 -1.46 6.55 -39.60 -0.26 -1.72 16 4 C -0.02 -0.31 3.72 -104.62 -0.39 -0.70 16 5 C -0.07 -1.39 3.09 -89.94 -0.28 -1.67 16 6 H 0.07 1.23 8.11 -51.93 -0.42 0.81 16 7 C -0.15 -2.51 6.27 -24.59 -0.15 -2.67 16 8 C 0.04 0.81 7.57 -2.29 -0.02 0.79 16 9 N -0.67 -15.25 7.09 -105.02 -0.74 -16.00 16 10 C 0.22 5.17 3.20 -67.87 -0.22 4.96 16 11 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 12 C -0.55 -14.05 7.68 -34.44 -0.26 -14.31 16 13 H 0.07 1.80 4.29 -52.48 -0.23 1.58 16 14 C 0.08 2.00 5.15 -17.82 -0.09 1.91 16 15 N -0.87 -24.26 12.86 55.43 0.71 -23.55 16 16 Si 0.88 21.00 29.54 -169.99 -5.02 15.97 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 20 C -0.10 -1.76 9.72 -39.59 -0.38 -2.15 16 21 C -0.15 -2.51 10.03 -39.51 -0.40 -2.90 16 22 C 0.07 1.19 7.24 -39.42 -0.29 0.91 16 23 F -0.15 -2.58 16.48 2.25 0.04 -2.54 16 24 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.06 0.90 7.64 -51.93 -0.40 0.51 16 26 H 0.07 0.96 8.09 -51.93 -0.42 0.54 16 27 H 0.13 2.30 5.80 -52.49 -0.30 1.99 16 28 H 0.07 1.19 5.58 -51.93 -0.29 0.90 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.34 8.34 7.78 -39.29 -0.31 8.04 16 33 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 34 H 0.13 1.97 8.06 -52.49 -0.42 1.55 16 35 H 0.13 1.79 8.06 -52.49 -0.42 1.36 16 LS Contribution 285.66 15.07 4.30 4.30 Total: -1.00 -27.55 285.66 -8.17 -35.72 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -4.46 Total: 7.64 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: -3.00 Total: -21.54 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: -0.03 Total: -39.55 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.04 Total: -2.54 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -27.55 -8.17 -35.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261042007.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.451 kcal (2) G-P(sol) polarization free energy of solvation -27.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds