Wall clock time and date at job start Mon Mar 30 2020 06:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38216 * 120.01616 * 2 1 4 4 C 1.38216 * 120.02618 * 180.02562 * 3 2 1 5 5 C 1.50703 * 119.97771 * 179.97438 * 4 3 2 6 6 H 1.08998 * 110.76712 * 209.65526 * 5 4 3 7 7 C 1.55144 * 110.70131 * 332.85795 * 5 4 3 8 8 C 1.54910 * 101.65068 * 154.03683 * 7 5 4 9 9 N 1.47850 * 104.79503 * 322.92356 * 8 7 5 10 10 C 1.47446 * 108.56548 * 24.10222 * 9 8 7 11 11 H 1.08992 * 109.88709 * 118.57521 * 10 9 8 12 12 C 1.50699 * 109.88464 * 239.60234 * 10 9 8 13 13 H 1.08004 * 120.00174 * 114.71959 * 12 10 9 14 14 C 1.37879 * 119.99993 * 294.71881 * 12 10 9 15 15 N 1.31514 * 119.99976 * 0.02562 * 14 12 10 16 16 Si 1.86805 * 120.00055 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.46752 * 60.00178 * 16 14 12 18 18 H 1.48503 * 109.46886 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46998 * 300.00200 * 16 14 12 20 20 C 1.38273 * 120.05431 * 0.25499 * 4 3 2 21 21 C 1.38183 * 120.01818 * 359.45019 * 20 4 3 22 22 C 1.38438 * 120.00544 * 179.97438 * 2 1 3 23 23 F 1.35096 * 120.02954 * 0.04045 * 22 2 1 24 24 H 1.09002 * 109.47343 * 89.99403 * 1 2 3 25 25 H 1.08997 * 109.47449 * 209.99997 * 1 2 3 26 26 H 1.09005 * 109.46686 * 330.00067 * 1 2 3 27 27 H 1.08000 * 119.98622 * 359.97438 * 3 2 1 28 28 H 1.08996 * 110.99335 * 35.94034 * 7 5 4 29 29 H 1.09000 * 111.02017 * 272.13916 * 7 5 4 30 30 H 1.09003 * 110.36716 * 204.10145 * 8 7 5 31 31 H 1.09000 * 110.37451 * 81.75624 * 8 7 5 32 32 H 1.00900 * 110.99761 * 261.83031 * 9 8 7 33 33 H 0.97006 * 119.99975 * 179.97438 * 15 14 12 34 34 H 1.07994 * 119.99157 * 179.72325 * 20 4 3 35 35 H 1.07995 * 120.01048 * 180.26863 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1968 0.0000 4 6 3.5806 1.1970 -0.0005 5 6 4.3334 2.5026 -0.0011 6 1 5.2935 2.3949 -0.5057 7 6 3.4883 3.6226 -0.6631 8 6 4.0648 4.8911 0.0139 9 7 4.3421 4.4823 1.4075 10 6 4.5292 3.0201 1.4395 11 1 5.5341 2.7825 1.7881 12 6 3.5080 2.3926 2.3529 13 1 2.7557 1.7314 1.9486 14 6 3.5340 2.6625 3.7048 15 7 4.4496 3.4680 4.1970 16 14 2.2685 1.8840 4.8372 17 1 2.3825 0.4052 4.7643 18 1 2.5117 2.3307 6.2324 19 1 0.9060 2.2969 4.4150 20 6 4.2734 0.0003 -0.0064 21 6 3.5842 -1.1974 -0.0002 22 6 2.1994 -1.1988 0.0005 23 9 1.5246 -2.3692 0.0002 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8901 0.5139 27 1 1.6585 2.1321 -0.0004 28 1 2.4302 3.5025 -0.4307 29 1 3.6487 3.6482 -1.7409 30 1 3.3323 5.6981 -0.0062 31 1 4.9853 5.2004 -0.4811 32 1 3.5939 4.7648 2.0228 33 1 4.4677 3.6582 5.1480 34 1 5.3533 0.0017 -0.0113 35 1 4.1254 -2.1319 -0.0004 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261042007.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:37 Heat of formation + Delta-G solvation = -38.784011 kcal Electronic energy + Delta-G solvation = -18562.439677 eV Core-core repulsion = 15666.587562 eV Total energy + Delta-G solvation = -2895.852115 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.80135 -40.84171 -38.50621 -34.47559 -33.88794 -32.63810 -30.11907 -28.72963 -27.89890 -26.23702 -23.80168 -22.55907 -21.80492 -20.52908 -18.62064 -18.34696 -17.38478 -16.88300 -16.55419 -16.20640 -15.84190 -15.40612 -14.93386 -14.44600 -14.28496 -14.15225 -14.10614 -13.82239 -13.56247 -13.35363 -12.82789 -12.81625 -12.52558 -12.32566 -12.18234 -11.95261 -11.79085 -11.51188 -11.25457 -11.01062 -10.55248 -9.62955 -9.19617 -8.72283 -8.02887 -6.18210 0.34796 0.41400 1.38039 1.41410 1.46408 2.43153 2.73723 3.21570 3.40205 3.77147 3.79332 3.92712 4.10192 4.20109 4.36977 4.39675 4.49448 4.61050 4.67907 4.74267 4.80649 4.91094 4.93838 5.04994 5.18372 5.21887 5.25892 5.33981 5.46376 5.48751 5.73424 5.78762 5.93351 6.10166 6.19597 6.63172 7.03109 7.19074 7.52703 8.99957 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.017499 B = 0.010147 C = 0.007741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.674446 B = 2758.671413 C = 3616.252954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.130 4.130 3 C -0.091 4.091 4 C -0.034 4.034 5 C -0.067 4.067 6 H 0.075 0.925 7 C -0.135 4.135 8 C 0.043 3.957 9 N -0.688 5.688 10 C 0.218 3.782 11 H 0.000 1.000 12 C -0.546 4.546 13 H 0.077 0.923 14 C 0.029 3.971 15 N -0.902 5.902 16 Si 0.930 3.070 17 H -0.282 1.282 18 H -0.289 1.289 19 H -0.268 1.268 20 C -0.111 4.111 21 C -0.148 4.148 22 C 0.055 3.945 23 F -0.149 7.149 24 H 0.089 0.911 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.135 0.865 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.330 0.670 33 H 0.257 0.743 34 H 0.137 0.863 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.175 -4.513 -10.578 12.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.130 4.130 3 C -0.109 4.109 4 C -0.034 4.034 5 C -0.086 4.086 6 H 0.093 0.907 7 C -0.174 4.174 8 C -0.087 4.087 9 N -0.317 5.317 10 C 0.111 3.889 11 H 0.018 0.982 12 C -0.585 4.585 13 H 0.095 0.905 14 C -0.172 4.172 15 N -0.540 5.540 16 Si 0.757 3.243 17 H -0.208 1.208 18 H -0.215 1.215 19 H -0.193 1.193 20 C -0.129 4.129 21 C -0.167 4.167 22 C 0.036 3.964 23 F -0.128 7.128 24 H 0.107 0.893 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.152 0.848 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.146 0.854 33 H 0.066 0.934 34 H 0.155 0.845 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.425 -4.290 -10.410 12.097 hybrid contribution -1.234 -0.905 1.146 1.911 sum -5.659 -5.195 -9.264 12.035 Atomic orbital electron populations 1.20738 0.89033 1.03304 1.03543 1.20130 0.98046 0.91715 1.03149 1.20896 0.93796 0.97125 0.99048 1.19685 0.93763 0.94839 0.95124 1.21445 0.97486 0.91816 0.97897 0.90704 1.23197 0.99478 0.94654 1.00038 1.22912 0.99070 0.96539 0.90142 1.61939 1.48375 1.15225 1.06113 1.19500 0.94627 0.84638 0.90176 0.98235 1.22176 1.15063 1.28827 0.92438 0.90493 1.25636 0.96658 0.95274 0.99638 1.70168 1.34582 1.36224 1.13035 0.86058 0.80892 0.78792 0.78567 1.20812 1.21518 1.19265 1.20990 1.00626 0.91090 1.00189 1.21201 0.92078 1.00074 1.03340 1.17631 0.90525 0.80812 1.07440 1.91405 1.80593 1.46283 1.94484 0.89251 0.91542 0.90658 0.84766 0.91180 0.89684 0.91642 0.91563 0.85370 0.93414 0.84549 0.83366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.86 9.84 71.24 0.70 -2.16 16 2 C -0.13 -4.22 5.89 -19.82 -0.12 -4.33 16 3 C -0.09 -3.13 6.55 22.26 0.15 -2.99 16 4 C -0.03 -1.21 3.72 -19.86 -0.07 -1.29 16 5 C -0.07 -2.50 3.09 -10.36 -0.03 -2.53 16 6 H 0.07 2.65 8.11 -2.39 -0.02 2.63 16 7 C -0.14 -4.31 6.27 31.98 0.20 -4.11 16 8 C 0.04 1.50 7.57 86.77 0.66 2.15 16 9 N -0.69 -31.35 7.09 -486.18 -3.44 -34.79 16 10 C 0.22 10.39 3.20 44.51 0.14 10.53 16 11 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 12 C -0.55 -27.84 7.68 25.60 0.20 -27.65 16 13 H 0.08 3.80 4.29 -2.91 -0.01 3.79 16 14 C 0.03 1.58 5.15 84.66 0.44 2.02 16 15 N -0.90 -51.53 12.86 21.45 0.28 -51.26 16 16 Si 0.93 43.18 29.54 68.60 2.03 45.20 16 17 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 18 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 20 C -0.11 -3.74 9.72 22.26 0.22 -3.52 16 21 C -0.15 -4.70 10.03 22.32 0.22 -4.47 16 22 C 0.05 1.82 7.24 22.38 0.16 1.98 16 23 F -0.15 -4.77 16.48 44.97 0.74 -4.03 16 24 H 0.09 1.92 8.14 -2.39 -0.02 1.91 16 25 H 0.07 1.70 7.64 -2.39 -0.02 1.68 16 26 H 0.07 1.88 8.09 -2.38 -0.02 1.86 16 27 H 0.13 4.45 5.80 -2.91 -0.02 4.44 16 28 H 0.07 2.24 5.58 -2.39 -0.01 2.22 16 29 H 0.08 2.23 8.14 -2.39 -0.02 2.22 16 30 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.33 16.23 7.78 -89.69 -0.70 15.54 16 33 H 0.26 14.23 8.31 -92.70 -0.77 13.45 16 34 H 0.14 4.16 8.06 -2.91 -0.02 4.14 16 35 H 0.15 3.88 8.06 -2.91 -0.02 3.86 16 Total: -1.00 -58.72 285.66 2.87 -55.86 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: 0.41 Total: 25.39 kcal Atomic # 6 Polarization: -39.23 SS G_CDS: 2.86 Total: -36.37 kcal Atomic # 7 Polarization: -82.88 SS G_CDS: -3.17 Total: -86.05 kcal Atomic # 9 Polarization: -4.77 SS G_CDS: 0.74 Total: -4.03 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Total: -58.72 2.87 -55.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261042007.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.072 kcal (2) G-P(sol) polarization free energy of solvation -58.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds