Wall clock time and date at job start Mon Mar 30 2020 07:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46354 * 110.82937 * 2 1 4 4 C 1.51721 * 111.21183 * 211.24255 * 3 2 1 5 5 C 1.51765 * 113.89185 * 292.52994 * 4 3 2 6 6 H 1.08998 * 109.24696 * 306.49011 * 5 4 3 7 7 C 1.50703 * 109.24639 * 187.08610 * 5 4 3 8 8 H 1.08004 * 120.00256 * 358.86090 * 7 5 4 9 9 C 1.37881 * 120.00056 * 178.86417 * 7 5 4 10 10 N 1.31511 * 119.99757 * 179.97438 * 9 7 5 11 11 Si 1.86798 * 119.99868 * 359.97438 * 9 7 5 12 12 H 1.48500 * 109.47284 * 90.00161 * 11 9 7 13 13 H 1.48509 * 109.46846 * 210.00112 * 11 9 7 14 14 H 1.48497 * 109.47145 * 329.99556 * 11 9 7 15 15 C 1.53167 * 110.62588 * 66.78914 * 5 4 3 16 16 C 1.51465 * 108.24488 * 276.81711 * 15 5 4 17 17 C 1.38247 * 119.71937 * 249.50165 * 16 15 5 18 18 C 1.38332 * 119.70506 * 180.21787 * 17 16 15 19 19 C 1.38335 * 120.16632 * 359.94950 * 18 17 16 20 20 C 1.38290 * 120.15870 * 359.97438 * 19 18 17 21 21 F 1.35102 * 120.22376 * 180.02562 * 20 19 18 22 22 C 1.37673 * 119.86288 * 69.59205 * 16 15 5 23 23 H 1.09001 * 109.47321 * 307.77219 * 1 2 3 24 24 H 1.09004 * 109.47613 * 67.77759 * 1 2 3 25 25 H 1.09003 * 109.46892 * 187.77991 * 1 2 3 26 26 H 1.09000 * 109.05173 * 90.84129 * 3 2 1 27 27 H 1.08997 * 109.13236 * 331.70036 * 3 2 1 28 28 H 1.08997 * 108.59842 * 171.38669 * 4 3 2 29 29 H 1.09003 * 108.59540 * 53.66973 * 4 3 2 30 30 H 0.97005 * 119.99992 * 179.97438 * 10 9 7 31 31 H 1.09008 * 109.71223 * 157.12794 * 15 5 4 32 32 H 1.09001 * 109.71066 * 36.50660 * 15 5 4 33 33 H 1.08002 * 120.14842 * 0.16855 * 17 16 15 34 34 H 1.07995 * 119.91601 * 179.97438 * 18 17 16 35 35 H 1.08001 * 119.91746 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9894 1.3679 0.0000 4 6 3.3149 1.4510 -0.7336 5 6 4.4506 0.7265 -0.0348 6 1 4.5237 1.0803 0.9936 7 6 5.7429 1.0191 -0.7528 8 1 5.7420 1.6455 -1.6327 9 6 6.9264 0.4873 -0.2865 10 7 8.0540 0.7423 -0.9134 11 14 6.9282 -0.5955 1.2357 12 1 6.7374 -2.0127 0.8353 13 1 8.2255 -0.4515 1.9441 14 1 5.8232 -0.1829 2.1379 15 6 4.2056 -0.7855 -0.0323 16 6 3.2904 -1.1156 1.1286 17 6 3.7847 -1.8158 2.2134 18 6 2.9474 -2.1211 3.2714 19 6 1.6217 -1.7269 3.2449 20 6 1.1271 -1.0251 2.1609 21 9 -0.1673 -0.6389 2.1339 22 6 1.9725 -0.7190 1.0968 23 1 -0.3634 0.6295 0.8123 24 1 -0.3634 0.3887 -0.9513 25 1 -0.3633 -1.0182 0.1391 26 1 2.1300 1.6951 1.0302 27 1 1.2690 2.0242 -0.4882 28 1 3.5868 2.5008 -0.8423 29 1 3.1891 1.0229 -1.7281 30 1 8.8868 0.3684 -0.5851 31 1 5.1532 -1.3113 0.0856 32 1 3.7336 -1.0830 -0.9686 33 1 4.8196 -2.1238 2.2343 34 1 3.3298 -2.6683 4.1203 35 1 0.9717 -1.9670 4.0733 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261048234.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:34 Heat of formation + Delta-G solvation = 6.415590 kcal Electronic energy + Delta-G solvation = -18973.771483 eV Core-core repulsion = 16079.879370 eV Total energy + Delta-G solvation = -2893.892113 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.05211 -39.94108 -36.78375 -35.06076 -32.01503 -31.23690 -29.63371 -28.11594 -25.30561 -24.89450 -23.18028 -21.75077 -20.50829 -19.35970 -17.09684 -16.91428 -16.57172 -16.02353 -15.78870 -15.08370 -14.68749 -14.24552 -13.62194 -13.51468 -13.26742 -12.88393 -12.52119 -12.44662 -12.23482 -11.90034 -11.68441 -11.52411 -11.11316 -10.92069 -10.75695 -10.23862 -10.05537 -9.71665 -9.27343 -9.19419 -8.96799 -8.60495 -8.30277 -7.64510 -6.09036 -4.08506 1.35669 1.50425 3.21341 3.35115 3.37792 3.76162 4.05892 4.36665 4.38357 4.88363 5.11835 5.20532 5.28167 5.39599 5.45326 5.51336 5.59292 5.80557 5.86083 5.97262 6.00874 6.11411 6.20197 6.25200 6.30657 6.47933 6.63220 6.68571 6.79838 6.97780 7.03244 7.16290 7.28452 7.47352 7.58073 7.75202 8.50091 8.94947 9.52546 11.03302 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.027143 B = 0.009582 C = 0.007388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.329869 B = 2921.585704 C = 3789.179910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.487 5.487 3 C 0.059 3.941 4 C -0.098 4.098 5 C 0.023 3.977 6 H 0.024 0.976 7 C -0.511 4.511 8 H 0.075 0.925 9 C 0.068 3.932 10 N -0.900 5.900 11 Si 0.873 3.127 12 H -0.275 1.275 13 H -0.297 1.297 14 H -0.253 1.253 15 C -0.081 4.081 16 C -0.043 4.043 17 C -0.116 4.116 18 C -0.112 4.112 19 C -0.152 4.152 20 C 0.048 3.952 21 F -0.141 7.141 22 C 0.077 3.923 23 H 0.050 0.950 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.039 0.961 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.264 0.736 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.265 -4.001 6.681 15.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.204 5.204 3 C -0.066 4.066 4 C -0.136 4.136 5 C 0.005 3.995 6 H 0.042 0.958 7 C -0.549 4.549 8 H 0.093 0.907 9 C -0.133 4.133 10 N -0.538 5.538 11 Si 0.703 3.297 12 H -0.202 1.202 13 H -0.225 1.225 14 H -0.177 1.177 15 C -0.118 4.118 16 C -0.045 4.045 17 C -0.135 4.135 18 C -0.130 4.130 19 C -0.171 4.171 20 C 0.026 3.974 21 F -0.120 7.120 22 C -0.020 4.020 23 H 0.068 0.932 24 H 0.082 0.918 25 H 0.089 0.911 26 H 0.057 0.943 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.987 -4.165 6.171 14.970 hybrid contribution -0.347 -0.328 1.488 1.562 sum -13.334 -4.493 7.659 16.020 Atomic orbital electron populations 1.23055 0.86360 1.02581 1.01369 1.59404 1.08111 1.14866 1.38048 1.22029 0.98399 0.86061 1.00140 1.21069 0.91987 1.00936 0.99626 1.18880 0.94484 0.89398 0.96778 0.95765 1.21060 0.89193 1.31291 1.13348 0.90662 1.25047 0.95533 0.96149 0.96572 1.69897 0.98483 1.45215 1.40172 0.87149 0.77223 0.81027 0.84338 1.20249 1.22499 1.17705 1.21404 0.95777 1.00374 0.94224 1.19945 0.92531 0.94636 0.97376 1.21249 0.99955 0.98770 0.93526 1.20908 0.92654 1.00576 0.98888 1.20884 0.96860 1.01577 0.97829 1.18064 0.79070 1.04139 0.96120 1.91417 1.34622 1.89491 1.96435 1.18715 0.93472 1.00773 0.89077 0.93160 0.91811 0.91122 0.94288 0.91185 0.91874 0.91925 0.92665 0.91680 0.90231 0.85717 0.85464 0.85384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 7.80 60.06 0.47 0.66 16 2 N -0.49 -8.32 4.45 -180.17 -0.80 -9.12 16 3 C 0.06 1.00 5.33 -4.77 -0.03 0.97 16 4 C -0.10 -1.93 4.71 -28.01 -0.13 -2.06 16 5 C 0.02 0.54 1.51 -92.31 -0.14 0.40 16 6 H 0.02 0.58 6.89 -51.93 -0.36 0.23 16 7 C -0.51 -14.00 9.09 -34.44 -0.31 -14.32 16 8 H 0.08 2.23 7.98 -52.48 -0.42 1.81 16 9 C 0.07 1.94 5.41 -17.82 -0.10 1.84 16 10 N -0.90 -27.17 13.96 55.43 0.77 -26.40 16 11 Si 0.87 21.02 22.23 -169.99 -3.78 17.24 16 12 H -0.28 -6.35 6.77 56.52 0.38 -5.97 16 13 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16 14 H -0.25 -5.75 5.51 56.52 0.31 -5.44 16 15 C -0.08 -1.74 4.11 -27.42 -0.11 -1.85 16 16 C -0.04 -0.83 4.99 -104.45 -0.52 -1.35 16 17 C -0.12 -2.06 8.53 -39.54 -0.34 -2.39 16 18 C -0.11 -1.63 10.05 -39.51 -0.40 -2.03 16 19 C -0.15 -2.18 10.02 -39.53 -0.40 -2.58 16 20 C 0.05 0.77 6.90 -39.16 -0.27 0.50 16 21 F -0.14 -2.12 12.51 2.25 0.03 -2.09 16 22 C 0.08 1.38 5.01 -83.70 -0.42 0.96 16 23 H 0.05 0.69 6.34 -51.93 -0.33 0.36 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.07 0.99 6.95 -51.93 -0.36 0.63 16 26 H 0.04 0.68 7.76 -51.93 -0.40 0.28 16 27 H 0.07 1.01 7.73 -51.93 -0.40 0.61 16 28 H 0.06 1.22 8.09 -51.93 -0.42 0.80 16 29 H 0.06 1.25 8.02 -51.93 -0.42 0.83 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.07 1.49 3.54 -51.92 -0.18 1.31 16 32 H 0.08 1.70 7.86 -51.93 -0.41 1.29 16 33 H 0.12 2.21 5.80 -52.49 -0.30 1.91 16 34 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 35 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 265.50 15.07 4.00 4.00 Total: -1.00 -29.29 265.50 -6.99 -36.28 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -4.52 Total: 1.35 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: -2.69 Total: -21.25 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: -0.03 Total: -35.52 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.03 Total: -2.09 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -3.78 Total: 17.24 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.29 -6.99 -36.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261048234.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.695 kcal (2) G-P(sol) polarization free energy of solvation -29.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds