Wall clock time and date at job start Mon Mar 30 2020 07:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46354 * 110.82937 * 2 1 4 4 C 1.51721 * 111.21183 * 211.24255 * 3 2 1 5 5 C 1.51765 * 113.89185 * 292.52994 * 4 3 2 6 6 H 1.08998 * 109.24696 * 306.49011 * 5 4 3 7 7 C 1.50703 * 109.24639 * 187.08610 * 5 4 3 8 8 H 1.08004 * 120.00256 * 358.86090 * 7 5 4 9 9 C 1.37881 * 120.00056 * 178.86417 * 7 5 4 10 10 N 1.31511 * 119.99757 * 179.97438 * 9 7 5 11 11 Si 1.86798 * 119.99868 * 359.97438 * 9 7 5 12 12 H 1.48500 * 109.47284 * 90.00161 * 11 9 7 13 13 H 1.48509 * 109.46846 * 210.00112 * 11 9 7 14 14 H 1.48497 * 109.47145 * 329.99556 * 11 9 7 15 15 C 1.53167 * 110.62588 * 66.78914 * 5 4 3 16 16 C 1.51465 * 108.24488 * 276.81711 * 15 5 4 17 17 C 1.38247 * 119.71937 * 249.50165 * 16 15 5 18 18 C 1.38332 * 119.70506 * 180.21787 * 17 16 15 19 19 C 1.38335 * 120.16632 * 359.94950 * 18 17 16 20 20 C 1.38290 * 120.15870 * 359.97438 * 19 18 17 21 21 F 1.35102 * 120.22376 * 180.02562 * 20 19 18 22 22 C 1.37673 * 119.86288 * 69.59205 * 16 15 5 23 23 H 1.09001 * 109.47321 * 307.77219 * 1 2 3 24 24 H 1.09004 * 109.47613 * 67.77759 * 1 2 3 25 25 H 1.09003 * 109.46892 * 187.77991 * 1 2 3 26 26 H 1.09000 * 109.05173 * 90.84129 * 3 2 1 27 27 H 1.08997 * 109.13236 * 331.70036 * 3 2 1 28 28 H 1.08997 * 108.59842 * 171.38669 * 4 3 2 29 29 H 1.09003 * 108.59540 * 53.66973 * 4 3 2 30 30 H 0.97005 * 119.99992 * 179.97438 * 10 9 7 31 31 H 1.09008 * 109.71223 * 157.12794 * 15 5 4 32 32 H 1.09001 * 109.71066 * 36.50660 * 15 5 4 33 33 H 1.08002 * 120.14842 * 0.16855 * 17 16 15 34 34 H 1.07995 * 119.91601 * 179.97438 * 18 17 16 35 35 H 1.08001 * 119.91746 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9894 1.3679 0.0000 4 6 3.3149 1.4510 -0.7336 5 6 4.4506 0.7265 -0.0348 6 1 4.5237 1.0803 0.9936 7 6 5.7429 1.0191 -0.7528 8 1 5.7420 1.6455 -1.6327 9 6 6.9264 0.4873 -0.2865 10 7 8.0540 0.7423 -0.9134 11 14 6.9282 -0.5955 1.2357 12 1 6.7374 -2.0127 0.8353 13 1 8.2255 -0.4515 1.9441 14 1 5.8232 -0.1829 2.1379 15 6 4.2056 -0.7855 -0.0323 16 6 3.2904 -1.1156 1.1286 17 6 3.7847 -1.8158 2.2134 18 6 2.9474 -2.1211 3.2714 19 6 1.6217 -1.7269 3.2449 20 6 1.1271 -1.0251 2.1609 21 9 -0.1673 -0.6389 2.1339 22 6 1.9725 -0.7190 1.0968 23 1 -0.3634 0.6295 0.8123 24 1 -0.3634 0.3887 -0.9513 25 1 -0.3633 -1.0182 0.1391 26 1 2.1300 1.6951 1.0302 27 1 1.2690 2.0242 -0.4882 28 1 3.5868 2.5008 -0.8423 29 1 3.1891 1.0229 -1.7281 30 1 8.8868 0.3684 -0.5851 31 1 5.1532 -1.3113 0.0856 32 1 3.7336 -1.0830 -0.9686 33 1 4.8196 -2.1238 2.2343 34 1 3.3298 -2.6683 4.1203 35 1 0.9717 -1.9670 4.0733 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261048234.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:33 Heat of formation + Delta-G solvation = -12.169568 kcal Electronic energy + Delta-G solvation = -18974.577396 eV Core-core repulsion = 16079.879370 eV Total energy + Delta-G solvation = -2894.698026 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.21842 -41.27604 -38.06397 -36.73967 -34.04647 -32.61920 -30.89772 -29.63953 -26.96468 -26.22222 -24.74262 -23.09474 -21.81795 -21.09199 -18.86787 -18.21019 -18.10485 -17.30129 -17.02943 -16.64563 -16.17149 -15.60991 -15.09556 -15.01851 -14.60971 -14.51695 -14.08264 -13.94112 -13.61729 -13.32817 -13.14541 -13.03718 -12.65878 -12.28243 -12.16358 -11.94649 -11.85890 -11.47234 -11.09998 -11.00076 -10.73338 -10.31614 -9.63437 -8.90265 -8.29012 -6.33723 0.11659 0.26880 1.27871 1.36616 1.48010 2.33594 2.51979 2.81525 3.05820 3.14909 3.72406 3.87252 3.99754 4.16876 4.18805 4.27581 4.33920 4.44883 4.54970 4.60331 4.63885 4.71107 4.89668 4.95457 4.96426 5.05432 5.12187 5.16379 5.34312 5.47684 5.53509 5.65799 5.69026 5.78093 5.99091 6.25507 6.32832 6.73365 7.31765 8.86497 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.027143 B = 0.009582 C = 0.007388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.329869 B = 2921.585704 C = 3789.179910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.503 5.503 3 C 0.069 3.931 4 C -0.094 4.094 5 C 0.027 3.973 6 H 0.016 0.984 7 C -0.518 4.518 8 H 0.035 0.965 9 C 0.009 3.991 10 N -0.950 5.950 11 Si 0.937 3.063 12 H -0.260 1.260 13 H -0.302 1.302 14 H -0.232 1.232 15 C -0.071 4.071 16 C -0.070 4.070 17 C -0.133 4.133 18 C -0.100 4.100 19 C -0.138 4.138 20 C 0.044 3.956 21 F -0.135 7.135 22 C 0.064 3.936 23 H 0.056 0.944 24 H 0.080 0.920 25 H 0.071 0.929 26 H 0.035 0.965 27 H 0.099 0.901 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.265 0.735 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.121 0.879 34 H 0.166 0.834 35 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.814 -5.334 9.342 19.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.221 5.221 3 C -0.057 4.057 4 C -0.132 4.132 5 C 0.009 3.991 6 H 0.034 0.966 7 C -0.556 4.556 8 H 0.053 0.947 9 C -0.187 4.187 10 N -0.590 5.590 11 Si 0.763 3.237 12 H -0.186 1.186 13 H -0.230 1.230 14 H -0.155 1.155 15 C -0.109 4.109 16 C -0.072 4.072 17 C -0.151 4.151 18 C -0.118 4.118 19 C -0.157 4.157 20 C 0.022 3.978 21 F -0.113 7.113 22 C -0.034 4.034 23 H 0.075 0.925 24 H 0.098 0.902 25 H 0.090 0.910 26 H 0.053 0.947 27 H 0.117 0.883 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.139 0.861 34 H 0.184 0.816 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -15.575 -5.498 8.827 18.728 hybrid contribution 0.390 0.122 0.601 0.727 sum -15.186 -5.376 9.429 18.666 Atomic orbital electron populations 1.23093 0.84411 1.02924 1.02588 1.59339 1.09840 1.14528 1.38365 1.21881 0.97191 0.86985 0.99611 1.20967 0.92900 1.00056 0.99288 1.18774 0.93387 0.91298 0.95681 0.96592 1.21386 0.91710 1.30182 1.12274 0.94659 1.25934 0.94966 0.97773 1.00059 1.70057 0.99307 1.47184 1.42452 0.86149 0.77393 0.79759 0.80429 1.18586 1.22970 1.15489 1.21073 0.95729 0.98516 0.95560 1.19741 0.92981 0.97271 0.97248 1.21373 1.00464 0.99181 0.94127 1.21287 0.92273 0.99470 0.98750 1.21322 0.97153 0.99385 0.97840 1.18151 0.79187 1.04285 0.96135 1.91435 1.34027 1.89447 1.96415 1.18792 0.93377 1.01178 0.90018 0.92527 0.90180 0.91015 0.94683 0.88297 0.92320 0.92796 0.92641 0.93335 0.91083 0.86111 0.81627 0.81777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 7.80 127.69 1.00 1.41 16 2 N -0.50 -16.20 4.45 -723.93 -3.22 -19.43 16 3 C 0.07 2.21 5.33 85.99 0.46 2.67 16 4 C -0.09 -3.74 4.71 29.77 0.14 -3.60 16 5 C 0.03 1.28 1.51 -11.89 -0.02 1.26 16 6 H 0.02 0.77 6.89 -2.39 -0.02 0.75 16 7 C -0.52 -29.66 9.09 25.60 0.23 -29.42 16 8 H 0.04 2.23 7.98 -2.91 -0.02 2.20 16 9 C 0.01 0.55 5.41 84.66 0.46 1.01 16 10 N -0.95 -59.81 13.96 21.45 0.30 -59.51 16 11 Si 0.94 44.11 22.23 68.60 1.52 45.64 16 12 H -0.26 -11.49 6.77 99.48 0.67 -10.81 16 13 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 14 H -0.23 -10.02 5.51 99.48 0.55 -9.47 16 15 C -0.07 -3.09 4.11 30.15 0.12 -2.96 16 16 C -0.07 -2.60 4.99 -19.75 -0.10 -2.70 16 17 C -0.13 -4.30 8.53 22.29 0.19 -4.11 16 18 C -0.10 -2.43 10.05 22.32 0.22 -2.21 16 19 C -0.14 -3.25 10.02 22.31 0.22 -3.03 16 20 C 0.04 1.26 6.90 22.54 0.16 1.42 16 21 F -0.13 -3.53 12.51 44.97 0.56 -2.96 16 22 C 0.06 2.13 5.01 37.88 0.19 2.32 16 23 H 0.06 1.36 6.34 -2.39 -0.02 1.35 16 24 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.07 1.79 6.95 -2.39 -0.02 1.78 16 26 H 0.03 1.16 7.76 -2.39 -0.02 1.14 16 27 H 0.10 2.60 7.73 -2.39 -0.02 2.58 16 28 H 0.06 2.32 8.09 -2.39 -0.02 2.30 16 29 H 0.05 2.20 8.02 -2.39 -0.02 2.18 16 30 H 0.26 15.64 8.31 -92.70 -0.77 14.87 16 31 H 0.05 2.22 3.54 -2.38 -0.01 2.21 16 32 H 0.07 3.09 7.86 -2.39 -0.02 3.07 16 33 H 0.12 3.94 5.80 -2.91 -0.02 3.92 16 34 H 0.17 2.77 8.06 -2.91 -0.02 2.74 16 35 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -65.92 265.50 3.34 -62.58 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: 0.90 Total: 11.63 kcal Atomic # 6 Polarization: -41.22 SS G_CDS: 3.28 Total: -37.95 kcal Atomic # 7 Polarization: -76.02 SS G_CDS: -2.92 Total: -78.94 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.56 Total: -2.96 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.52 Total: 45.64 kcal Total: -65.92 3.34 -62.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261048234.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.411 kcal (2) G-P(sol) polarization free energy of solvation -65.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds