Wall clock time and date at job start Mon Mar 30 2020 06:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.46328 * 2 1 4 4 C 1.50699 * 109.46951 * 119.99576 * 2 1 3 5 5 H 1.08003 * 119.99727 * 120.00498 * 4 2 1 6 6 C 1.37877 * 120.00165 * 300.00247 * 4 2 1 7 7 N 1.31515 * 120.00169 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 120.00026 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47003 * 90.00117 * 8 6 4 10 10 H 1.48498 * 109.47256 * 210.00067 * 8 6 4 11 11 H 1.48503 * 109.46997 * 329.99698 * 8 6 4 12 12 C 1.52996 * 109.47348 * 239.99819 * 2 1 3 13 13 H 1.09002 * 110.65375 * 299.29674 * 12 2 1 14 14 C 1.54593 * 110.73476 * 62.47726 * 12 2 1 15 15 N 1.48407 * 102.39795 * 144.01610 * 14 12 2 16 16 C 1.46894 * 111.00361 * 94.52340 * 15 14 12 17 17 C 1.40202 * 107.88153 * 332.70477 * 15 14 12 18 18 C 1.38909 * 110.94744 * 18.41684 * 17 15 14 19 19 C 1.37949 * 120.49491 * 179.23563 * 18 17 15 20 20 C 1.38306 * 120.12441 * 0.22169 * 19 18 17 21 21 C 1.38281 * 119.89858 * 0.02643 * 20 19 18 22 22 C 1.38113 * 120.23202 * 359.89756 * 21 20 19 23 23 F 1.35102 * 119.91623 * 179.97438 * 22 21 20 24 24 H 1.08996 * 109.47037 * 60.00764 * 1 2 3 25 25 H 1.09006 * 109.46593 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47203 * 299.99909 * 1 2 3 27 27 H 0.97001 * 120.00280 * 179.97438 * 7 6 4 28 28 H 1.09002 * 110.78199 * 262.35786 * 14 12 2 29 29 H 1.09003 * 110.77932 * 25.79564 * 14 12 2 30 30 H 1.09004 * 109.47436 * 300.14861 * 16 15 14 31 31 H 1.09001 * 109.47467 * 60.14580 * 16 15 14 32 32 H 1.09000 * 109.47271 * 180.14223 * 16 15 14 33 33 H 1.08002 * 119.93704 * 180.23785 * 19 18 17 34 34 H 1.08006 * 120.04994 * 180.02562 * 20 19 18 35 35 H 1.08006 * 119.88694 * 179.87529 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 2.1379 -0.8588 3.5566 8 14 0.6246 1.2791 2.6541 9 1 -0.8029 0.8726 2.6998 10 1 0.9757 1.9953 3.9067 11 1 0.8469 2.1766 1.4920 12 6 2.0401 -0.7213 -1.2492 13 1 1.6977 -1.7560 -1.2624 14 6 1.5926 0.0197 -2.5300 15 7 2.7591 -0.1649 -3.4288 16 6 2.5716 -1.3312 -4.3020 17 6 3.9001 -0.3150 -2.6281 18 6 3.5524 -0.6554 -1.3270 19 6 4.5275 -0.8670 -0.3744 20 6 5.8635 -0.7369 -0.7078 21 6 6.2215 -0.3935 -1.9986 22 6 5.2496 -0.1819 -2.9568 23 9 5.6066 0.1539 -4.2158 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.9039 -0.5272 4.4376 28 1 0.6994 -0.4413 -2.9515 29 1 1.4239 1.0771 -2.3261 30 1 2.4527 -2.2266 -3.6918 31 1 1.6810 -1.1877 -4.9138 32 1 3.4419 -1.4448 -4.9484 33 1 4.2471 -1.1351 0.6336 34 1 6.6259 -0.9033 0.0388 35 1 7.2647 -0.2900 -2.2582 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261053222.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:46 Heat of formation + Delta-G solvation = -2.604234 kcal Electronic energy + Delta-G solvation = -18592.894880 eV Core-core repulsion = 15698.611638 eV Total energy + Delta-G solvation = -2894.283242 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.43826 -40.41562 -36.46910 -34.98093 -31.94465 -30.23126 -29.33324 -28.11700 -25.62269 -24.93832 -22.78152 -21.58646 -20.90626 -19.20834 -17.00134 -16.57844 -16.13439 -15.95940 -15.32090 -14.82588 -14.48812 -14.13106 -13.94681 -13.62354 -12.95339 -12.70637 -12.56523 -12.29165 -12.00439 -11.77531 -11.68124 -11.62778 -11.18550 -11.02202 -10.87913 -10.33580 -10.16214 -9.90644 -9.47299 -9.11695 -8.92449 -8.59723 -8.14952 -7.58478 -6.13577 -4.12692 1.57423 1.67293 3.23619 3.35834 3.37141 3.85954 4.03132 4.36438 4.68776 5.03940 5.19252 5.23586 5.26396 5.36309 5.49425 5.63427 5.69102 5.83140 5.87132 5.90543 5.98150 6.15703 6.28033 6.38491 6.43669 6.56981 6.68264 6.72227 6.81759 6.94669 7.01168 7.06040 7.29464 7.42914 7.56912 7.68909 8.43034 8.86506 9.48828 10.98411 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.026909 B = 0.008057 C = 0.006754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.302750 B = 3474.503523 C = 4144.770501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.023 3.977 3 H 0.031 0.969 4 C -0.514 4.514 5 H 0.081 0.919 6 C 0.072 3.928 7 N -0.899 5.899 8 Si 0.887 3.113 9 H -0.281 1.281 10 H -0.299 1.299 11 H -0.267 1.267 12 C -0.059 4.059 13 H 0.083 0.917 14 C 0.049 3.951 15 N -0.494 5.494 16 C 0.027 3.973 17 C 0.038 3.962 18 C -0.071 4.071 19 C -0.083 4.083 20 C -0.111 4.111 21 C -0.153 4.153 22 C 0.090 3.910 23 F -0.147 7.147 24 H 0.030 0.970 25 H 0.052 0.948 26 H 0.040 0.960 27 H 0.264 0.736 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.034 0.966 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.159 0.841 34 H 0.130 0.870 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.592 -0.072 -11.259 11.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.004 3.996 3 H 0.049 0.951 4 C -0.552 4.552 5 H 0.099 0.901 6 C -0.130 4.130 7 N -0.537 5.537 8 Si 0.718 3.282 9 H -0.208 1.208 10 H -0.226 1.226 11 H -0.192 1.192 12 C -0.079 4.079 13 H 0.101 0.899 14 C -0.077 4.077 15 N -0.211 5.211 16 C -0.119 4.119 17 C -0.059 4.059 18 C -0.074 4.074 19 C -0.101 4.101 20 C -0.129 4.129 21 C -0.172 4.172 22 C 0.069 3.931 23 F -0.125 7.125 24 H 0.049 0.951 25 H 0.071 0.929 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.099 0.901 29 H 0.107 0.893 30 H 0.052 0.948 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.176 0.824 34 H 0.148 0.852 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.613 0.369 -11.515 11.813 hybrid contribution -0.642 0.264 0.523 0.869 sum 1.971 0.633 -10.992 11.185 Atomic orbital electron populations 1.22193 0.99083 1.00715 0.98665 1.19101 0.91577 0.96344 0.92622 0.95142 1.21027 1.32167 1.13540 0.88437 0.90147 1.24984 0.95633 0.96496 0.95896 1.69880 1.45576 1.40277 0.97957 0.86856 0.80557 0.83919 0.76895 1.20766 1.22646 1.19173 1.21304 0.89789 1.00476 0.96283 0.89879 1.23448 0.91510 1.01909 0.90832 1.60392 1.01363 1.38460 1.20905 1.22441 1.02360 0.90719 0.96372 1.19570 0.90192 1.02487 0.93618 1.20898 0.96465 0.97310 0.92682 1.21355 0.90826 0.96618 1.01305 1.21023 0.96551 1.00237 0.95110 1.20821 0.98369 1.04608 0.93440 1.17104 0.90453 1.05554 0.79953 1.91425 1.92510 1.90356 1.38245 0.95081 0.92924 0.94188 0.92622 0.90119 0.89336 0.94777 0.90933 0.91491 0.82351 0.85182 0.85198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 8.48 37.16 0.32 -2.70 16 2 C 0.02 0.50 1.37 -91.77 -0.13 0.37 16 3 H 0.03 0.71 7.20 -51.93 -0.37 0.34 16 4 C -0.51 -13.16 7.49 -34.44 -0.26 -13.42 16 5 H 0.08 2.18 6.11 -52.48 -0.32 1.86 16 6 C 0.07 1.95 5.45 -17.82 -0.10 1.85 16 7 N -0.90 -26.06 13.96 55.43 0.77 -25.28 16 8 Si 0.89 21.32 24.37 -169.99 -4.14 17.18 16 9 H -0.28 -6.61 6.87 56.52 0.39 -6.22 16 10 H -0.30 -7.29 7.11 56.52 0.40 -6.89 16 11 H -0.27 -6.21 6.53 56.52 0.37 -5.84 16 12 C -0.06 -1.13 2.50 -90.51 -0.23 -1.35 16 13 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 14 C 0.05 0.81 5.53 -2.15 -0.01 0.79 16 15 N -0.49 -8.27 5.34 -176.36 -0.94 -9.21 16 16 C 0.03 0.38 9.29 60.06 0.56 0.93 16 17 C 0.04 0.69 5.57 -83.29 -0.46 0.22 16 18 C -0.07 -1.37 5.61 -104.05 -0.58 -1.95 16 19 C -0.08 -1.58 9.19 -39.66 -0.36 -1.95 16 20 C -0.11 -1.78 10.06 -39.54 -0.40 -2.17 16 21 C -0.15 -2.36 10.00 -39.61 -0.40 -2.75 16 22 C 0.09 1.56 7.32 -39.14 -0.29 1.27 16 23 F -0.15 -2.50 17.27 2.25 0.04 -2.46 16 24 H 0.03 0.53 7.34 -51.93 -0.38 0.14 16 25 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.04 0.86 3.27 -51.93 -0.17 0.69 16 27 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 28 H 0.08 1.12 7.78 -51.93 -0.40 0.72 16 29 H 0.09 1.48 7.89 -51.93 -0.41 1.07 16 30 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.84 8.11 -51.93 -0.42 0.42 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.16 3.39 5.35 -52.49 -0.28 3.11 16 34 H 0.13 1.75 8.06 -52.48 -0.42 1.32 16 35 H 0.13 1.63 8.06 -52.48 -0.42 1.20 16 LS Contribution 279.35 15.07 4.21 4.21 Total: -1.00 -28.38 279.35 -6.88 -35.26 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -4.48 Total: 1.15 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: -2.34 Total: -20.85 kcal Atomic # 7 Polarization: -34.33 SS G_CDS: -0.17 Total: -34.49 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.04 Total: -2.46 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.14 Total: 17.18 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -28.38 -6.88 -35.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261053222.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.656 kcal (2) G-P(sol) polarization free energy of solvation -28.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds