Wall clock time and date at job start Mon Mar 30 2020 06:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.46328 * 2 1 4 4 C 1.50699 * 109.46951 * 119.99576 * 2 1 3 5 5 H 1.08003 * 119.99727 * 120.00498 * 4 2 1 6 6 C 1.37877 * 120.00165 * 300.00247 * 4 2 1 7 7 N 1.31515 * 120.00169 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 120.00026 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47003 * 90.00117 * 8 6 4 10 10 H 1.48498 * 109.47256 * 210.00067 * 8 6 4 11 11 H 1.48503 * 109.46997 * 329.99698 * 8 6 4 12 12 C 1.52996 * 109.47348 * 239.99819 * 2 1 3 13 13 H 1.09002 * 110.65375 * 299.29674 * 12 2 1 14 14 C 1.54593 * 110.73476 * 62.47726 * 12 2 1 15 15 N 1.48407 * 102.39795 * 144.01610 * 14 12 2 16 16 C 1.46894 * 111.00361 * 94.52340 * 15 14 12 17 17 C 1.40202 * 107.88153 * 332.70477 * 15 14 12 18 18 C 1.38909 * 110.94744 * 18.41684 * 17 15 14 19 19 C 1.37949 * 120.49491 * 179.23563 * 18 17 15 20 20 C 1.38306 * 120.12441 * 0.22169 * 19 18 17 21 21 C 1.38281 * 119.89858 * 0.02643 * 20 19 18 22 22 C 1.38113 * 120.23202 * 359.89756 * 21 20 19 23 23 F 1.35102 * 119.91623 * 179.97438 * 22 21 20 24 24 H 1.08996 * 109.47037 * 60.00764 * 1 2 3 25 25 H 1.09006 * 109.46593 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47203 * 299.99909 * 1 2 3 27 27 H 0.97001 * 120.00280 * 179.97438 * 7 6 4 28 28 H 1.09002 * 110.78199 * 262.35786 * 14 12 2 29 29 H 1.09003 * 110.77932 * 25.79564 * 14 12 2 30 30 H 1.09004 * 109.47436 * 300.14861 * 16 15 14 31 31 H 1.09001 * 109.47467 * 60.14580 * 16 15 14 32 32 H 1.09000 * 109.47271 * 180.14223 * 16 15 14 33 33 H 1.08002 * 119.93704 * 180.23785 * 19 18 17 34 34 H 1.08006 * 120.04994 * 180.02562 * 20 19 18 35 35 H 1.08006 * 119.88694 * 179.87529 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 2.1379 -0.8588 3.5566 8 14 0.6246 1.2791 2.6541 9 1 -0.8029 0.8726 2.6998 10 1 0.9757 1.9953 3.9067 11 1 0.8469 2.1766 1.4920 12 6 2.0401 -0.7213 -1.2492 13 1 1.6977 -1.7560 -1.2624 14 6 1.5926 0.0197 -2.5300 15 7 2.7591 -0.1649 -3.4288 16 6 2.5716 -1.3312 -4.3020 17 6 3.9001 -0.3150 -2.6281 18 6 3.5524 -0.6554 -1.3270 19 6 4.5275 -0.8670 -0.3744 20 6 5.8635 -0.7369 -0.7078 21 6 6.2215 -0.3935 -1.9986 22 6 5.2496 -0.1819 -2.9568 23 9 5.6066 0.1539 -4.2158 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.9039 -0.5272 4.4376 28 1 0.6994 -0.4413 -2.9515 29 1 1.4239 1.0771 -2.3261 30 1 2.4527 -2.2266 -3.6918 31 1 1.6810 -1.1877 -4.9138 32 1 3.4419 -1.4448 -4.9484 33 1 4.2471 -1.1351 0.6336 34 1 6.6259 -0.9033 0.0388 35 1 7.2647 -0.2900 -2.2582 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261053222.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:45 Heat of formation + Delta-G solvation = -19.664256 kcal Electronic energy + Delta-G solvation = -18593.634658 eV Core-core repulsion = 15698.611638 eV Total energy + Delta-G solvation = -2895.023020 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.77038 -41.77579 -37.80389 -36.64772 -33.86479 -31.69151 -30.64695 -29.53188 -27.15097 -26.54603 -24.16325 -23.11348 -22.28442 -20.79147 -18.79374 -18.10213 -17.50875 -17.30863 -16.70402 -16.58046 -15.81505 -15.53146 -15.25868 -15.13310 -14.67119 -14.17851 -14.12008 -13.81025 -13.47849 -13.18539 -13.02679 -12.98412 -12.74132 -12.55834 -12.33025 -12.00625 -11.89387 -11.55966 -11.14799 -10.95482 -10.64074 -10.38819 -9.55425 -8.90199 -8.23314 -6.23881 0.23008 0.29930 1.31592 1.38757 1.46953 2.36156 2.58964 2.67000 3.12561 3.34875 3.70501 3.93209 4.02398 4.07903 4.30043 4.31341 4.44243 4.47598 4.54157 4.65755 4.70584 4.77878 4.87812 4.89768 4.98267 5.09961 5.18167 5.21906 5.35136 5.43965 5.63170 5.71198 5.71964 5.75457 5.94210 6.23229 6.37263 6.80412 7.39631 8.91769 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.026909 B = 0.008057 C = 0.006754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.302750 B = 3474.503523 C = 4144.770501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.023 3.977 3 H 0.017 0.983 4 C -0.501 4.501 5 H 0.052 0.948 6 C 0.015 3.985 7 N -0.947 5.947 8 Si 0.940 3.060 9 H -0.270 1.270 10 H -0.307 1.307 11 H -0.253 1.253 12 C -0.058 4.058 13 H 0.077 0.923 14 C 0.057 3.943 15 N -0.500 5.500 16 C 0.027 3.973 17 C 0.033 3.967 18 C -0.098 4.098 19 C -0.105 4.105 20 C -0.106 4.106 21 C -0.138 4.138 22 C 0.081 3.919 23 F -0.145 7.145 24 H 0.068 0.932 25 H 0.055 0.945 26 H 0.026 0.974 27 H 0.262 0.738 28 H 0.111 0.889 29 H 0.086 0.914 30 H 0.030 0.970 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.125 0.875 34 H 0.156 0.844 35 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.324 0.800 -13.600 13.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.004 3.996 3 H 0.035 0.965 4 C -0.539 4.539 5 H 0.070 0.930 6 C -0.181 4.181 7 N -0.588 5.588 8 Si 0.769 3.231 9 H -0.196 1.196 10 H -0.235 1.235 11 H -0.177 1.177 12 C -0.077 4.077 13 H 0.095 0.905 14 C -0.069 4.069 15 N -0.217 5.217 16 C -0.119 4.119 17 C -0.064 4.064 18 C -0.100 4.100 19 C -0.124 4.124 20 C -0.124 4.124 21 C -0.157 4.157 22 C 0.060 3.940 23 F -0.123 7.123 24 H 0.087 0.913 25 H 0.074 0.926 26 H 0.045 0.955 27 H 0.071 0.929 28 H 0.129 0.871 29 H 0.104 0.896 30 H 0.049 0.951 31 H 0.118 0.882 32 H 0.087 0.913 33 H 0.142 0.858 34 H 0.173 0.827 35 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 2.333 1.240 -13.890 14.139 hybrid contribution -0.444 -0.075 1.187 1.270 sum 1.889 1.165 -12.702 12.895 Atomic orbital electron populations 1.22122 0.97215 1.01350 0.99774 1.19024 0.93044 0.95208 0.92300 0.96501 1.21325 1.30285 1.12280 0.89972 0.92986 1.25714 0.97323 0.99307 0.95791 1.70021 1.47990 1.42371 0.98412 0.85987 0.79444 0.80935 0.76750 1.19618 1.23522 1.17715 1.21217 0.89977 1.00135 0.96355 0.90459 1.23447 0.92528 1.01595 0.89370 1.60458 1.00870 1.39699 1.20705 1.22545 1.03778 0.89536 0.96040 1.19725 0.91185 1.02180 0.93298 1.21013 0.96684 0.98814 0.93533 1.21218 0.92688 0.98467 1.00004 1.21251 0.95691 0.99219 0.96244 1.21154 0.99826 1.02401 0.92325 1.17325 0.90564 1.05714 0.80394 1.91430 1.92428 1.90345 1.38123 0.91343 0.92616 0.95544 0.92898 0.87100 0.89571 0.95093 0.88201 0.91314 0.85756 0.82674 0.81643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.64 8.48 71.98 0.61 -5.03 16 2 C 0.02 1.01 1.37 -11.54 -0.02 1.00 16 3 H 0.02 0.78 7.20 -2.38 -0.02 0.76 16 4 C -0.50 -26.37 7.49 25.60 0.19 -26.18 16 5 H 0.05 2.99 6.11 -2.91 -0.02 2.97 16 6 C 0.02 0.86 5.45 84.65 0.46 1.32 16 7 N -0.95 -57.04 13.96 21.45 0.30 -56.74 16 8 Si 0.94 44.18 24.37 68.60 1.67 45.85 16 9 H -0.27 -12.11 6.87 99.48 0.68 -11.43 16 10 H -0.31 -14.69 7.11 99.48 0.71 -13.99 16 11 H -0.25 -11.19 6.53 99.48 0.65 -10.54 16 12 C -0.06 -2.14 2.50 -10.72 -0.03 -2.17 16 13 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 14 C 0.06 1.71 5.53 86.55 0.48 2.19 16 15 N -0.50 -15.53 5.34 -711.87 -3.80 -19.33 16 16 C 0.03 0.66 9.29 127.69 1.19 1.84 16 17 C 0.03 1.15 5.57 38.28 0.21 1.36 16 18 C -0.10 -3.77 5.61 -19.49 -0.11 -3.88 16 19 C -0.11 -4.11 9.19 22.22 0.20 -3.90 16 20 C -0.11 -3.28 10.06 22.30 0.22 -3.06 16 21 C -0.14 -3.91 10.00 22.25 0.22 -3.68 16 22 C 0.08 2.62 7.32 22.55 0.17 2.79 16 23 F -0.14 -4.56 17.27 44.97 0.78 -3.78 16 24 H 0.07 2.09 7.34 -2.39 -0.02 2.08 16 25 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 26 H 0.03 1.07 3.27 -2.39 -0.01 1.07 16 27 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 28 H 0.11 2.64 7.78 -2.39 -0.02 2.62 16 29 H 0.09 2.64 7.89 -2.39 -0.02 2.62 16 30 H 0.03 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.10 1.92 8.11 -2.39 -0.02 1.90 16 32 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.12 5.69 5.35 -2.91 -0.02 5.67 16 34 H 0.16 3.92 8.06 -2.91 -0.02 3.90 16 35 H 0.17 3.48 8.06 -2.91 -0.02 3.45 16 Total: -1.00 -62.45 279.35 3.76 -58.69 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 1.01 Total: 12.70 kcal Atomic # 6 Polarization: -41.20 SS G_CDS: 3.81 Total: -37.40 kcal Atomic # 7 Polarization: -72.56 SS G_CDS: -3.50 Total: -76.06 kcal Atomic # 9 Polarization: -4.56 SS G_CDS: 0.78 Total: -3.78 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.67 Total: 45.85 kcal Total: -62.45 3.76 -58.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261053222.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.026 kcal (2) G-P(sol) polarization free energy of solvation -62.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds