Wall clock time and date at job start Mon Mar 30 2020 06:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47304 * 2 1 4 4 C 1.50697 * 109.47041 * 240.00040 * 2 1 3 5 5 H 1.08008 * 120.00098 * 240.00504 * 4 2 1 6 6 C 1.37880 * 120.00135 * 59.99914 * 4 2 1 7 7 N 1.31513 * 120.00038 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99806 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47681 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47219 * 120.00541 * 8 6 4 11 11 H 1.48505 * 109.46979 * 239.99940 * 8 6 4 12 12 C 1.52998 * 109.46959 * 120.00048 * 2 1 3 13 13 H 1.09004 * 110.65651 * 63.17951 * 12 2 1 14 14 C 1.54598 * 110.73798 * 299.99775 * 12 2 1 15 15 N 1.47904 * 102.62716 * 215.90331 * 14 12 2 16 16 C 1.46898 * 111.00624 * 265.42705 * 15 14 12 17 17 C 1.40212 * 107.86142 * 27.23335 * 15 14 12 18 18 C 1.38906 * 110.94781 * 341.70942 * 17 15 14 19 19 C 1.37951 * 120.49286 * 180.50960 * 18 17 15 20 20 C 1.38304 * 120.12758 * 359.75340 * 19 18 17 21 21 C 1.38292 * 119.89449 * 359.82671 * 20 19 18 22 22 C 1.38112 * 120.23102 * 0.57370 * 21 20 19 23 23 F 1.35104 * 119.91654 * 179.71756 * 22 21 20 24 24 H 1.09000 * 109.47780 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47264 * 300.00224 * 1 2 3 26 26 H 1.08998 * 109.47176 * 59.99663 * 1 2 3 27 27 H 0.96996 * 119.99917 * 180.02562 * 7 6 4 28 28 H 1.09002 * 110.77700 * 97.61806 * 14 12 2 29 29 H 1.09000 * 110.93832 * 334.26516 * 14 12 2 30 30 H 1.08990 * 109.47746 * 179.82234 * 16 15 14 31 31 H 1.08998 * 109.46875 * 299.82656 * 16 15 14 32 32 H 1.08999 * 109.46716 * 59.82053 * 16 15 14 33 33 H 1.08001 * 119.93671 * 179.77808 * 19 18 17 34 34 H 1.07996 * 120.05643 * 180.02562 * 20 19 18 35 35 H 1.08000 * 119.88117 * 180.34100 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 3.1464 -2.2870 -3.6038 10 1 1.1659 -1.5867 -4.8161 11 1 3.1465 -0.1874 -4.8165 12 6 2.0399 -0.7213 1.2492 13 1 1.7342 -1.7675 1.2409 14 6 1.5409 -0.0154 2.5309 15 7 2.6871 -0.1706 3.4527 16 6 2.5196 -1.3540 4.3067 17 6 3.8515 -0.2707 2.6780 18 6 3.5467 -0.6034 1.3642 19 6 4.5507 -0.7632 0.4317 20 6 5.8728 -0.5879 0.7980 21 6 6.1877 -0.2481 2.1010 22 6 5.1873 -0.0949 3.0409 23 9 5.5026 0.2316 4.3134 24 1 -0.3635 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 0.7089 1.1613 -3.4844 28 1 0.6559 -0.5135 2.9270 29 1 1.3371 1.0384 2.3411 30 1 3.3777 -1.4461 4.9724 31 1 1.6103 -1.2492 4.8985 32 1 2.4464 -2.2448 3.6829 33 1 4.3038 -1.0254 -0.5865 34 1 6.6578 -0.7129 0.0670 35 1 7.2198 -0.1059 2.3856 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261053224.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:50 Heat of formation + Delta-G solvation = -11.615734 kcal Electronic energy + Delta-G solvation = -18537.211287 eV Core-core repulsion = 15642.537277 eV Total energy + Delta-G solvation = -2894.674010 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.42427 -40.35867 -36.44557 -34.77438 -31.84304 -29.83523 -29.32552 -27.75570 -25.46424 -24.99280 -22.75756 -21.43606 -20.91918 -19.13614 -16.78626 -16.39489 -16.07445 -15.95914 -15.28924 -14.64685 -14.32879 -14.19068 -13.93933 -13.42578 -12.91036 -12.74812 -12.28840 -11.92402 -11.79383 -11.52327 -11.52038 -11.24619 -11.07562 -10.97146 -10.77107 -10.55494 -10.19643 -9.81675 -9.52182 -9.04870 -8.80393 -8.40227 -8.12575 -7.53711 -6.04471 -4.10766 1.58570 1.67775 3.24443 3.33671 3.35064 3.92946 4.03910 4.37190 4.70867 5.11167 5.24523 5.28388 5.30720 5.46252 5.55404 5.69466 5.72163 5.88415 5.90845 5.95586 6.14502 6.41586 6.47945 6.59271 6.64896 6.79174 6.85800 7.00183 7.05038 7.09026 7.24086 7.30823 7.59680 7.66240 7.90775 8.07204 8.36490 8.90825 9.53257 11.01398 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.025771 B = 0.007884 C = 0.006433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.230197 B = 3550.688817 C = 4351.762750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.060 3.940 3 H 0.030 0.970 4 C -0.512 4.512 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.887 5.887 8 Si 0.885 3.115 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C -0.070 4.070 13 H 0.077 0.923 14 C 0.052 3.948 15 N -0.494 5.494 16 C 0.028 3.972 17 C 0.039 3.961 18 C -0.067 4.067 19 C -0.086 4.086 20 C -0.112 4.112 21 C -0.155 4.155 22 C 0.092 3.908 23 F -0.146 7.146 24 H 0.025 0.975 25 H 0.009 0.991 26 H 0.084 0.916 27 H 0.260 0.740 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.033 0.967 33 H 0.149 0.851 34 H 0.129 0.871 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.128 -3.483 8.652 10.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.041 3.959 3 H 0.048 0.952 4 C -0.550 4.550 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.713 3.287 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.210 1.210 12 C -0.089 4.089 13 H 0.095 0.905 14 C -0.074 4.074 15 N -0.211 5.211 16 C -0.119 4.119 17 C -0.058 4.058 18 C -0.069 4.069 19 C -0.104 4.104 20 C -0.131 4.131 21 C -0.174 4.174 22 C 0.071 3.929 23 F -0.125 7.125 24 H 0.044 0.956 25 H 0.029 0.971 26 H 0.102 0.898 27 H 0.070 0.930 28 H 0.096 0.904 29 H 0.108 0.892 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.051 0.949 33 H 0.167 0.833 34 H 0.147 0.853 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.032 -2.928 8.973 10.696 hybrid contribution 0.310 -0.954 -1.163 1.536 sum 5.341 -3.882 7.809 10.227 Atomic orbital electron populations 1.21837 0.98421 0.99006 1.00361 1.18599 0.92460 0.95544 0.89270 0.95209 1.21183 1.31177 1.12240 0.90368 0.92303 1.24944 0.95093 0.94931 0.98877 1.69885 1.36605 1.22820 1.23241 0.86642 0.78756 0.79759 0.83509 1.19721 1.21060 1.21023 1.21559 0.89101 1.00570 0.97642 0.90458 1.23337 0.91461 1.02246 0.90364 1.60302 1.00957 1.37940 1.21950 1.22433 1.02384 0.90447 0.96587 1.19606 0.90109 1.02413 0.93631 1.21005 0.96861 0.96586 0.92489 1.21123 0.90748 0.97606 1.00962 1.20976 0.96676 1.00452 0.94962 1.20786 0.98123 1.04983 0.93515 1.17124 0.90902 1.05430 0.79466 1.91426 1.93562 1.90549 1.36970 0.95593 0.97150 0.89761 0.93031 0.90373 0.89220 0.91582 0.90924 0.94879 0.83311 0.85329 0.85224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.74 37.16 0.32 -2.82 16 2 C 0.06 1.40 1.78 -91.77 -0.16 1.24 16 3 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 4 C -0.51 -12.93 6.91 -34.44 -0.24 -13.17 16 5 H 0.06 1.46 6.20 -52.48 -0.33 1.13 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 7 N -0.89 -24.41 11.32 55.43 0.63 -23.78 16 8 Si 0.89 20.29 29.54 -169.99 -5.02 15.27 16 9 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 C -0.07 -1.39 2.50 -90.50 -0.23 -1.61 16 13 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 14 C 0.05 0.92 5.42 -2.43 -0.01 0.90 16 15 N -0.49 -8.64 5.33 -176.77 -0.94 -9.59 16 16 C 0.03 0.40 9.29 60.06 0.56 0.96 16 17 C 0.04 0.73 5.57 -83.29 -0.46 0.26 16 18 C -0.07 -1.31 5.62 -104.05 -0.58 -1.90 16 19 C -0.09 -1.61 9.27 -39.66 -0.37 -1.98 16 20 C -0.11 -1.76 10.06 -39.54 -0.40 -2.16 16 21 C -0.15 -2.38 10.00 -39.61 -0.40 -2.78 16 22 C 0.09 1.60 7.32 -39.14 -0.29 1.32 16 23 F -0.15 -2.53 17.27 2.25 0.04 -2.49 16 24 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.01 0.19 7.19 -51.93 -0.37 -0.18 16 26 H 0.08 2.15 6.07 -51.93 -0.32 1.83 16 27 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 28 H 0.08 1.21 7.76 -51.93 -0.40 0.80 16 29 H 0.09 1.66 7.79 -51.93 -0.40 1.25 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.89 8.11 -51.93 -0.42 0.47 16 32 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.15 2.97 5.58 -52.49 -0.29 2.68 16 34 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 35 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 286.39 15.07 4.32 4.32 Total: -1.00 -27.43 286.39 -7.96 -35.39 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -4.63 Total: 1.07 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: -2.35 Total: -20.18 kcal Atomic # 7 Polarization: -33.05 SS G_CDS: -0.32 Total: -33.37 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.04 Total: -2.49 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -27.43 -7.96 -35.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261053224.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.772 kcal (2) G-P(sol) polarization free energy of solvation -27.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds