Wall clock time and date at job start Mon Mar 30 2020 06:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47304 * 2 1 4 4 C 1.50697 * 109.47041 * 240.00040 * 2 1 3 5 5 H 1.08008 * 120.00098 * 240.00504 * 4 2 1 6 6 C 1.37880 * 120.00135 * 59.99914 * 4 2 1 7 7 N 1.31513 * 120.00038 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99806 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47681 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47219 * 120.00541 * 8 6 4 11 11 H 1.48505 * 109.46979 * 239.99940 * 8 6 4 12 12 C 1.52998 * 109.46959 * 120.00048 * 2 1 3 13 13 H 1.09004 * 110.65651 * 63.17951 * 12 2 1 14 14 C 1.54598 * 110.73798 * 299.99775 * 12 2 1 15 15 N 1.47904 * 102.62716 * 215.90331 * 14 12 2 16 16 C 1.46898 * 111.00624 * 265.42705 * 15 14 12 17 17 C 1.40212 * 107.86142 * 27.23335 * 15 14 12 18 18 C 1.38906 * 110.94781 * 341.70942 * 17 15 14 19 19 C 1.37951 * 120.49286 * 180.50960 * 18 17 15 20 20 C 1.38304 * 120.12758 * 359.75340 * 19 18 17 21 21 C 1.38292 * 119.89449 * 359.82671 * 20 19 18 22 22 C 1.38112 * 120.23102 * 0.57370 * 21 20 19 23 23 F 1.35104 * 119.91654 * 179.71756 * 22 21 20 24 24 H 1.09000 * 109.47780 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47264 * 300.00224 * 1 2 3 26 26 H 1.08998 * 109.47176 * 59.99663 * 1 2 3 27 27 H 0.96996 * 119.99917 * 180.02562 * 7 6 4 28 28 H 1.09002 * 110.77700 * 97.61806 * 14 12 2 29 29 H 1.09000 * 110.93832 * 334.26516 * 14 12 2 30 30 H 1.08990 * 109.47746 * 179.82234 * 16 15 14 31 31 H 1.08998 * 109.46875 * 299.82656 * 16 15 14 32 32 H 1.08999 * 109.46716 * 59.82053 * 16 15 14 33 33 H 1.08001 * 119.93671 * 179.77808 * 19 18 17 34 34 H 1.07996 * 120.05643 * 180.02562 * 20 19 18 35 35 H 1.08000 * 119.88117 * 180.34100 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 3.1464 -2.2870 -3.6038 10 1 1.1659 -1.5867 -4.8161 11 1 3.1465 -0.1874 -4.8165 12 6 2.0399 -0.7213 1.2492 13 1 1.7342 -1.7675 1.2409 14 6 1.5409 -0.0154 2.5309 15 7 2.6871 -0.1706 3.4527 16 6 2.5196 -1.3540 4.3067 17 6 3.8515 -0.2707 2.6780 18 6 3.5467 -0.6034 1.3642 19 6 4.5507 -0.7632 0.4317 20 6 5.8728 -0.5879 0.7980 21 6 6.1877 -0.2481 2.1010 22 6 5.1873 -0.0949 3.0409 23 9 5.5026 0.2316 4.3134 24 1 -0.3635 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 0.7089 1.1613 -3.4844 28 1 0.6559 -0.5135 2.9270 29 1 1.3371 1.0384 2.3411 30 1 3.3777 -1.4461 4.9724 31 1 1.6103 -1.2492 4.8985 32 1 2.4464 -2.2448 3.6829 33 1 4.3038 -1.0254 -0.5865 34 1 6.6578 -0.7129 0.0670 35 1 7.2198 -0.1059 2.3856 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261053224.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:49 Heat of formation + Delta-G solvation = -26.182182 kcal Electronic energy + Delta-G solvation = -18537.842936 eV Core-core repulsion = 15642.537277 eV Total energy + Delta-G solvation = -2895.305659 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.76389 -41.75311 -37.78384 -36.53059 -33.64149 -31.34717 -30.64425 -29.25696 -27.21100 -26.52963 -24.18263 -23.00636 -22.29848 -20.77652 -18.39544 -18.09009 -17.47395 -17.31624 -16.65290 -16.43739 -15.72154 -15.56609 -15.26944 -15.01005 -14.53243 -14.13133 -13.76781 -13.46110 -13.27352 -12.99857 -12.95209 -12.89089 -12.72638 -12.56374 -12.31568 -12.23364 -12.05030 -11.53324 -11.16873 -10.80712 -10.44012 -10.34620 -9.53014 -8.88775 -8.04670 -6.16164 0.24738 0.31935 1.41248 1.44955 1.53857 2.45140 2.62176 2.68212 3.23773 3.37025 3.74923 3.96502 4.04423 4.13864 4.32775 4.34605 4.46304 4.55063 4.62186 4.71783 4.84442 4.91089 4.93365 5.08777 5.09627 5.20798 5.30304 5.38997 5.44749 5.64118 5.64631 5.74120 5.94318 5.98012 6.15507 6.25075 6.40397 6.92764 7.50502 9.00513 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.025771 B = 0.007884 C = 0.006433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.230197 B = 3550.688817 C = 4351.762750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.063 3.937 3 H -0.009 1.009 4 C -0.513 4.513 5 H 0.061 0.939 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.944 3.056 9 H -0.262 1.262 10 H -0.286 1.286 11 H -0.285 1.285 12 C -0.064 4.064 13 H 0.075 0.925 14 C 0.059 3.941 15 N -0.502 5.502 16 C 0.028 3.972 17 C 0.029 3.971 18 C -0.096 4.096 19 C -0.105 4.105 20 C -0.103 4.103 21 C -0.140 4.140 22 C 0.080 3.920 23 F -0.146 7.146 24 H 0.030 0.970 25 H 0.033 0.967 26 H 0.053 0.947 27 H 0.258 0.742 28 H 0.103 0.897 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.031 0.969 33 H 0.130 0.870 34 H 0.162 0.838 35 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.508 -4.422 9.597 12.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.044 3.956 3 H 0.009 0.991 4 C -0.551 4.551 5 H 0.079 0.921 6 C -0.185 4.185 7 N -0.559 5.559 8 Si 0.771 3.229 9 H -0.186 1.186 10 H -0.212 1.212 11 H -0.211 1.211 12 C -0.083 4.083 13 H 0.093 0.907 14 C -0.068 4.068 15 N -0.219 5.219 16 C -0.118 4.118 17 C -0.068 4.068 18 C -0.099 4.099 19 C -0.124 4.124 20 C -0.121 4.121 21 C -0.159 4.159 22 C 0.059 3.941 23 F -0.125 7.125 24 H 0.049 0.951 25 H 0.052 0.948 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.121 0.879 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.115 0.885 32 H 0.050 0.950 33 H 0.148 0.852 34 H 0.180 0.820 35 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 6.418 -3.882 9.932 12.446 hybrid contribution -0.066 -0.644 -1.406 1.548 sum 6.352 -4.526 8.526 11.556 Atomic orbital electron populations 1.21689 0.97960 0.99100 1.00040 1.18464 0.92811 0.93597 0.90729 0.99062 1.21487 1.30425 1.12010 0.91162 0.92111 1.25663 0.95516 0.95658 1.01670 1.70028 1.38029 1.24292 1.23576 0.85711 0.78144 0.78935 0.80155 1.18586 1.21201 1.21115 1.21368 0.89984 1.00014 0.96971 0.90696 1.23251 0.92573 1.01382 0.89553 1.60336 1.00408 1.39446 1.21730 1.22531 1.03821 0.89189 0.96256 1.19779 0.91056 1.02545 0.93414 1.21071 0.96679 0.98584 0.93522 1.21150 0.92298 0.98853 1.00089 1.21293 0.96051 0.98877 0.95926 1.21174 0.99409 1.02696 0.92637 1.17374 0.90983 1.05794 0.79954 1.91426 1.93480 1.90582 1.36976 0.95105 0.94759 0.92764 0.93287 0.87916 0.90618 0.91123 0.88538 0.94984 0.85191 0.81999 0.81610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.98 8.74 71.98 0.63 -5.35 16 2 C 0.06 3.01 1.78 -11.54 -0.02 2.99 16 3 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 4 C -0.51 -26.35 6.91 25.60 0.18 -26.17 16 5 H 0.06 3.04 6.20 -2.91 -0.02 3.02 16 6 C 0.01 0.70 5.30 84.66 0.45 1.15 16 7 N -0.92 -51.96 11.32 21.45 0.24 -51.72 16 8 Si 0.94 42.01 29.54 68.60 2.03 44.03 16 9 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 10 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 12 C -0.06 -2.56 2.50 -10.72 -0.03 -2.59 16 13 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 14 C 0.06 2.03 5.42 86.65 0.47 2.50 16 15 N -0.50 -16.89 5.33 -713.19 -3.80 -20.69 16 16 C 0.03 0.73 9.29 127.69 1.19 1.92 16 17 C 0.03 1.04 5.57 38.27 0.21 1.26 16 18 C -0.10 -3.75 5.62 -19.49 -0.11 -3.86 16 19 C -0.11 -3.90 9.27 22.22 0.21 -3.70 16 20 C -0.10 -2.99 10.06 22.30 0.22 -2.77 16 21 C -0.14 -3.88 10.00 22.25 0.22 -3.66 16 22 C 0.08 2.63 7.32 22.55 0.17 2.80 16 23 F -0.15 -4.72 17.27 44.97 0.78 -3.94 16 24 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.03 1.36 7.19 -2.38 -0.02 1.34 16 26 H 0.05 2.83 6.07 -2.39 -0.01 2.81 16 27 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 28 H 0.10 2.97 7.76 -2.39 -0.02 2.95 16 29 H 0.08 2.80 7.79 -2.39 -0.02 2.78 16 30 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.10 2.08 8.11 -2.39 -0.02 2.06 16 32 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.13 5.24 5.58 -2.91 -0.02 5.22 16 34 H 0.16 3.55 8.06 -2.91 -0.02 3.53 16 35 H 0.17 3.37 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -59.55 286.39 4.11 -55.44 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 1.08 Total: 12.38 kcal Atomic # 6 Polarization: -39.29 SS G_CDS: 3.79 Total: -35.50 kcal Atomic # 7 Polarization: -68.84 SS G_CDS: -3.56 Total: -72.41 kcal Atomic # 9 Polarization: -4.72 SS G_CDS: 0.78 Total: -3.94 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.03 kcal Total: -59.55 4.11 -55.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261053224.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.260 kcal (2) G-P(sol) polarization free energy of solvation -59.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds