Wall clock time and date at job start Mon Mar 30 2020 06:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.46817 * 2 1 4 4 C 1.50701 * 109.46809 * 240.00412 * 2 1 3 5 5 H 1.08003 * 119.99866 * 239.99517 * 4 2 1 6 6 C 1.37877 * 120.00263 * 59.99592 * 4 2 1 7 7 N 1.31519 * 119.99871 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99944 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47118 * 90.00074 * 8 6 4 10 10 H 1.48503 * 109.46737 * 210.00252 * 8 6 4 11 11 H 1.48495 * 109.47253 * 329.99807 * 8 6 4 12 12 C 1.52993 * 109.47659 * 119.99926 * 2 1 3 13 13 H 1.08993 * 110.66059 * 301.26704 * 12 2 1 14 14 C 1.54598 * 110.73620 * 64.45442 * 12 2 1 15 15 N 1.47905 * 102.63169 * 143.95349 * 14 12 2 16 16 C 1.46903 * 111.00169 * 94.66807 * 15 14 12 17 17 C 1.40200 * 107.88050 * 332.84982 * 15 14 12 18 18 C 1.38908 * 110.95656 * 18.09533 * 17 15 14 19 19 C 1.37961 * 120.49552 * 179.55040 * 18 17 15 20 20 C 1.38301 * 120.12181 * 0.25690 * 19 18 17 21 21 C 1.38290 * 119.90111 * 359.97438 * 20 19 18 22 22 C 1.38111 * 120.23040 * 359.88179 * 21 20 19 23 23 F 1.35101 * 119.91211 * 179.97438 * 22 21 20 24 24 H 1.09003 * 109.46891 * 303.16776 * 1 2 3 25 25 H 1.08995 * 109.47973 * 63.17139 * 1 2 3 26 26 H 1.09006 * 109.46934 * 183.17450 * 1 2 3 27 27 H 0.97003 * 119.99453 * 179.97438 * 7 6 4 28 28 H 1.08999 * 110.78134 * 25.66598 * 14 12 2 29 29 H 1.08999 * 110.77967 * 262.23945 * 14 12 2 30 30 H 1.09001 * 109.47205 * 59.99445 * 16 15 14 31 31 H 1.08995 * 109.47125 * 179.97438 * 16 15 14 32 32 H 1.08997 * 109.46831 * 300.00065 * 16 15 14 33 33 H 1.08001 * 119.93536 * 180.27154 * 19 18 17 34 34 H 1.08006 * 120.05091 * 179.97438 * 20 19 18 35 35 H 1.07994 * 119.88080 * 179.85125 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9433 0.8303 -2.6034 8 14 2.3223 -1.1194 -4.0081 9 1 1.3446 -2.1615 -4.4125 10 1 2.4870 -0.1400 -5.1121 11 1 3.6307 -1.7564 -3.7122 12 6 2.0401 -0.7212 1.2491 13 1 1.6693 -0.2358 2.1518 14 6 1.6348 -2.2129 1.2239 15 7 2.8042 -2.8763 1.8402 16 6 2.5973 -3.0766 3.2807 17 6 3.9294 -2.0748 1.6009 18 6 3.5545 -0.7836 1.2521 19 6 4.5102 0.1742 0.9824 20 6 5.8536 -0.1468 1.0524 21 6 6.2388 -1.4303 1.3940 22 6 5.2865 -2.3924 1.6680 23 9 5.6701 -3.6444 2.0005 24 1 -0.3633 0.5622 0.8603 25 1 -0.3635 0.4638 -0.9170 26 1 -0.3633 -1.0262 0.0569 27 1 0.7093 1.1619 -3.4844 28 1 1.4902 -2.5570 0.1998 29 1 0.7372 -2.3799 1.8193 30 1 1.7179 -3.7013 3.4380 31 1 3.4718 -3.5665 3.7087 32 1 2.4482 -2.1111 3.7640 33 1 4.2086 1.1765 0.7163 34 1 6.6008 0.6038 0.8406 35 1 7.2879 -1.6812 1.4462 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261053226.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:53 Heat of formation + Delta-G solvation = -10.416620 kcal Electronic energy + Delta-G solvation = -18712.210239 eV Core-core repulsion = 15817.588227 eV Total energy + Delta-G solvation = -2894.622013 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.38543 -40.33979 -36.44588 -34.69308 -31.79567 -29.80282 -29.30975 -27.54702 -25.31816 -25.08934 -22.75949 -21.49036 -20.99217 -19.08493 -16.96641 -16.11118 -15.95190 -15.65057 -15.27269 -14.72571 -14.32919 -14.23732 -13.89855 -13.20759 -12.95968 -12.68053 -12.43502 -11.92290 -11.73603 -11.62438 -11.37346 -11.11610 -10.99925 -10.94158 -10.73377 -10.53462 -10.08777 -9.83102 -9.50438 -9.03408 -8.79795 -8.33171 -8.12138 -7.43681 -5.99763 -4.04608 1.62080 1.69664 3.31382 3.38416 3.44302 4.00290 4.06188 4.44979 4.74798 5.12512 5.25893 5.30666 5.37499 5.55019 5.57771 5.66756 5.76582 5.90497 5.91920 5.98961 6.25010 6.43510 6.45961 6.57551 6.74392 6.81115 6.87253 6.98033 7.03314 7.12333 7.26739 7.34893 7.64607 7.69353 7.88730 8.10716 8.41652 8.98236 9.60467 11.06006 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.021283 B = 0.008852 C = 0.007794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.292871 B = 3162.220585 C = 3591.476374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.059 3.941 3 H 0.029 0.971 4 C -0.503 4.503 5 H 0.058 0.942 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.885 3.115 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 C -0.073 4.073 13 H 0.065 0.935 14 C 0.058 3.942 15 N -0.494 5.494 16 C 0.028 3.972 17 C 0.047 3.953 18 C -0.056 4.056 19 C -0.088 4.088 20 C -0.108 4.108 21 C -0.157 4.157 22 C 0.095 3.905 23 F -0.146 7.146 24 H 0.006 0.994 25 H 0.086 0.914 26 H 0.027 0.973 27 H 0.259 0.741 28 H 0.111 0.889 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.030 0.970 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.069 -2.561 9.389 10.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.040 3.960 3 H 0.047 0.953 4 C -0.541 4.541 5 H 0.076 0.924 6 C -0.138 4.138 7 N -0.530 5.530 8 Si 0.713 3.287 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.199 1.199 12 C -0.092 4.092 13 H 0.083 0.917 14 C -0.067 4.067 15 N -0.211 5.211 16 C -0.118 4.118 17 C -0.050 4.050 18 C -0.059 4.059 19 C -0.107 4.107 20 C -0.126 4.126 21 C -0.176 4.176 22 C 0.074 3.926 23 F -0.124 7.124 24 H 0.025 0.975 25 H 0.105 0.895 26 H 0.046 0.954 27 H 0.069 0.931 28 H 0.129 0.871 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.048 0.952 33 H 0.145 0.855 34 H 0.146 0.854 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.019 -3.057 9.078 10.814 hybrid contribution 0.294 0.026 -0.632 0.698 sum 5.313 -3.031 8.446 10.428 Atomic orbital electron populations 1.21848 0.98448 0.98663 1.00807 1.18589 0.92465 0.95363 0.89539 0.95278 1.21137 1.30554 1.12244 0.90160 0.92421 1.24910 0.95090 0.94913 0.98856 1.69878 1.36983 1.22922 1.23243 0.86693 0.79496 0.79492 0.83023 1.20727 1.21353 1.19877 1.21537 0.89291 0.97371 1.01006 0.91688 1.23396 0.90096 0.91546 1.01683 1.60290 1.02286 1.46274 1.12269 1.22434 1.02174 1.00238 0.86993 1.19537 0.90264 0.92301 1.02908 1.20941 0.96645 0.91830 0.96460 1.20491 0.91571 0.99942 0.98683 1.20833 0.95883 0.95532 1.00378 1.20735 0.98524 0.93364 1.04981 1.17153 0.90336 0.80042 1.05065 1.91425 1.91763 1.38861 1.90396 0.97480 0.89535 0.95420 0.93107 0.87089 0.91078 0.90973 0.91698 0.95153 0.85486 0.85384 0.85211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.89 37.16 0.33 -2.84 16 2 C 0.06 1.38 2.11 -91.78 -0.19 1.18 16 3 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.50 -13.06 6.89 -34.44 -0.24 -13.29 16 5 H 0.06 1.56 6.53 -52.48 -0.34 1.21 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.69 11.30 55.43 0.63 -24.06 16 8 Si 0.88 21.30 29.54 -169.99 -5.02 16.28 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 12 C -0.07 -1.45 2.89 -90.51 -0.26 -1.71 16 13 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 14 C 0.06 1.11 5.22 -2.43 -0.01 1.09 16 15 N -0.49 -9.11 5.33 -176.77 -0.94 -10.05 16 16 C 0.03 0.41 9.29 60.07 0.56 0.97 16 17 C 0.05 0.90 5.58 -83.29 -0.46 0.44 16 18 C -0.06 -1.10 4.67 -104.05 -0.49 -1.59 16 19 C -0.09 -1.59 9.88 -39.66 -0.39 -1.98 16 20 C -0.11 -1.67 10.06 -39.54 -0.40 -2.07 16 21 C -0.16 -2.47 10.00 -39.61 -0.40 -2.86 16 22 C 0.10 1.72 7.32 -39.14 -0.29 1.44 16 23 F -0.15 -2.63 17.27 2.25 0.04 -2.59 16 24 H 0.01 0.13 8.14 -51.93 -0.42 -0.30 16 25 H 0.09 2.20 5.99 -51.93 -0.31 1.89 16 26 H 0.03 0.58 7.33 -51.93 -0.38 0.20 16 27 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.11 2.38 6.30 -51.93 -0.33 2.06 16 29 H 0.07 1.17 7.76 -51.93 -0.40 0.77 16 30 H 0.07 0.92 8.11 -51.93 -0.42 0.50 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.13 2.23 8.06 -52.49 -0.42 1.81 16 34 H 0.13 1.58 8.06 -52.48 -0.42 1.15 16 35 H 0.13 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 288.04 15.07 4.34 4.34 Total: -1.00 -28.07 288.04 -7.99 -36.07 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -4.70 Total: -0.37 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: -2.33 Total: -19.62 kcal Atomic # 7 Polarization: -33.80 SS G_CDS: -0.32 Total: -34.11 kcal Atomic # 9 Polarization: -2.63 SS G_CDS: 0.04 Total: -2.59 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.07 -7.99 -36.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261053226.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.649 kcal (2) G-P(sol) polarization free energy of solvation -28.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds