Wall clock time and date at job start Mon Mar 30 2020 06:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.46817 * 2 1 4 4 C 1.50701 * 109.46809 * 240.00412 * 2 1 3 5 5 H 1.08003 * 119.99866 * 239.99517 * 4 2 1 6 6 C 1.37877 * 120.00263 * 59.99592 * 4 2 1 7 7 N 1.31519 * 119.99871 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99944 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47118 * 90.00074 * 8 6 4 10 10 H 1.48503 * 109.46737 * 210.00252 * 8 6 4 11 11 H 1.48495 * 109.47253 * 329.99807 * 8 6 4 12 12 C 1.52993 * 109.47659 * 119.99926 * 2 1 3 13 13 H 1.08993 * 110.66059 * 301.26704 * 12 2 1 14 14 C 1.54598 * 110.73620 * 64.45442 * 12 2 1 15 15 N 1.47905 * 102.63169 * 143.95349 * 14 12 2 16 16 C 1.46903 * 111.00169 * 94.66807 * 15 14 12 17 17 C 1.40200 * 107.88050 * 332.84982 * 15 14 12 18 18 C 1.38908 * 110.95656 * 18.09533 * 17 15 14 19 19 C 1.37961 * 120.49552 * 179.55040 * 18 17 15 20 20 C 1.38301 * 120.12181 * 0.25690 * 19 18 17 21 21 C 1.38290 * 119.90111 * 359.97438 * 20 19 18 22 22 C 1.38111 * 120.23040 * 359.88179 * 21 20 19 23 23 F 1.35101 * 119.91211 * 179.97438 * 22 21 20 24 24 H 1.09003 * 109.46891 * 303.16776 * 1 2 3 25 25 H 1.08995 * 109.47973 * 63.17139 * 1 2 3 26 26 H 1.09006 * 109.46934 * 183.17450 * 1 2 3 27 27 H 0.97003 * 119.99453 * 179.97438 * 7 6 4 28 28 H 1.08999 * 110.78134 * 25.66598 * 14 12 2 29 29 H 1.08999 * 110.77967 * 262.23945 * 14 12 2 30 30 H 1.09001 * 109.47205 * 59.99445 * 16 15 14 31 31 H 1.08995 * 109.47125 * 179.97438 * 16 15 14 32 32 H 1.08997 * 109.46831 * 300.00065 * 16 15 14 33 33 H 1.08001 * 119.93536 * 180.27154 * 19 18 17 34 34 H 1.08006 * 120.05091 * 179.97438 * 20 19 18 35 35 H 1.07994 * 119.88080 * 179.85125 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9433 0.8303 -2.6034 8 14 2.3223 -1.1194 -4.0081 9 1 1.3446 -2.1615 -4.4125 10 1 2.4870 -0.1400 -5.1121 11 1 3.6307 -1.7564 -3.7122 12 6 2.0401 -0.7212 1.2491 13 1 1.6693 -0.2358 2.1518 14 6 1.6348 -2.2129 1.2239 15 7 2.8042 -2.8763 1.8402 16 6 2.5973 -3.0766 3.2807 17 6 3.9294 -2.0748 1.6009 18 6 3.5545 -0.7836 1.2521 19 6 4.5102 0.1742 0.9824 20 6 5.8536 -0.1468 1.0524 21 6 6.2388 -1.4303 1.3940 22 6 5.2865 -2.3924 1.6680 23 9 5.6701 -3.6444 2.0005 24 1 -0.3633 0.5622 0.8603 25 1 -0.3635 0.4638 -0.9170 26 1 -0.3633 -1.0262 0.0569 27 1 0.7093 1.1619 -3.4844 28 1 1.4902 -2.5570 0.1998 29 1 0.7372 -2.3799 1.8193 30 1 1.7179 -3.7013 3.4380 31 1 3.4718 -3.5665 3.7087 32 1 2.4482 -2.1111 3.7640 33 1 4.2086 1.1765 0.7163 34 1 6.6008 0.6038 0.8406 35 1 7.2879 -1.6812 1.4462 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261053226.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:53 Heat of formation + Delta-G solvation = -25.439229 kcal Electronic energy + Delta-G solvation = -18712.861669 eV Core-core repulsion = 15817.588227 eV Total energy + Delta-G solvation = -2895.273442 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.75848 -41.75377 -37.80771 -36.44331 -33.62615 -31.32935 -30.62864 -29.03817 -27.14107 -26.65626 -24.20882 -23.05117 -22.33936 -20.78425 -18.56721 -17.66756 -17.34600 -17.20838 -16.72640 -16.46454 -15.84554 -15.66295 -15.22274 -14.90701 -14.46733 -14.11933 -13.93125 -13.41927 -13.25981 -13.06357 -12.89206 -12.86628 -12.65302 -12.54935 -12.36418 -12.21870 -12.01556 -11.51686 -11.22668 -10.78084 -10.48799 -10.26592 -9.51500 -8.81611 -8.05014 -6.13722 0.27294 0.34955 1.38265 1.41532 1.50027 2.44956 2.67065 2.70288 3.24034 3.39582 3.73729 3.97388 4.10669 4.18288 4.32315 4.34300 4.45788 4.56504 4.62940 4.78788 4.84912 4.91825 5.01091 5.06852 5.11797 5.24041 5.32830 5.37519 5.50363 5.62256 5.66675 5.74601 5.93680 5.99863 6.18175 6.28905 6.43197 6.94381 7.52709 8.99539 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.021283 B = 0.008852 C = 0.007794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.292871 B = 3162.220585 C = 3591.476374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.062 3.938 3 H 0.002 0.998 4 C -0.498 4.498 5 H 0.044 0.956 6 C 0.019 3.981 7 N -0.915 5.915 8 Si 0.935 3.065 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.278 1.278 12 C -0.067 4.067 13 H 0.078 0.922 14 C 0.065 3.935 15 N -0.507 5.507 16 C 0.029 3.971 17 C 0.031 3.969 18 C -0.084 4.084 19 C -0.104 4.104 20 C -0.099 4.099 21 C -0.146 4.146 22 C 0.077 3.923 23 F -0.148 7.148 24 H 0.028 0.972 25 H 0.056 0.944 26 H 0.035 0.965 27 H 0.258 0.742 28 H 0.080 0.920 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.068 0.932 32 H 0.035 0.965 33 H 0.123 0.877 34 H 0.165 0.835 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.208 -3.075 10.249 12.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.043 3.957 3 H 0.020 0.980 4 C -0.536 4.536 5 H 0.062 0.938 6 C -0.179 4.179 7 N -0.556 5.556 8 Si 0.762 3.238 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.203 1.203 12 C -0.087 4.087 13 H 0.096 0.904 14 C -0.061 4.061 15 N -0.224 5.224 16 C -0.117 4.117 17 C -0.066 4.066 18 C -0.087 4.087 19 C -0.123 4.123 20 C -0.117 4.117 21 C -0.165 4.165 22 C 0.056 3.944 23 F -0.127 7.127 24 H 0.047 0.953 25 H 0.075 0.925 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.098 0.902 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.087 0.913 32 H 0.053 0.947 33 H 0.141 0.859 34 H 0.183 0.817 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 6.159 -3.579 9.947 12.235 hybrid contribution -0.003 0.184 -0.858 0.878 sum 6.155 -3.395 9.089 11.490 Atomic orbital electron populations 1.21704 0.97939 0.99143 1.00226 1.18463 0.92823 0.93937 0.90483 0.98002 1.21264 1.29611 1.11475 0.91263 0.93827 1.25498 0.95654 0.95656 1.01125 1.69987 1.38085 1.23984 1.23509 0.85910 0.78699 0.78596 0.80580 1.20427 1.21027 1.20320 1.21383 0.90051 0.97656 0.99577 0.90357 1.23214 0.91496 0.90730 1.00659 1.60277 1.01795 1.45991 1.14356 1.22516 1.03345 1.00956 0.84852 1.19749 0.91069 0.92310 1.03471 1.21040 0.96563 0.92686 0.98382 1.20713 0.92800 0.99671 0.99125 1.21224 0.95461 0.96349 0.98673 1.21149 0.99802 0.92666 1.02870 1.17455 0.90478 0.80539 1.05902 1.91415 1.91693 1.39076 1.90504 0.95265 0.92505 0.94633 0.93259 0.90201 0.88619 0.88867 0.91309 0.94658 0.85880 0.81718 0.81820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.99 8.89 71.98 0.64 -5.35 16 2 C 0.06 2.90 2.11 -11.54 -0.02 2.88 16 3 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 4 C -0.50 -26.18 6.89 25.60 0.18 -26.01 16 5 H 0.04 2.39 6.53 -2.91 -0.02 2.37 16 6 C 0.02 1.02 5.30 84.65 0.45 1.47 16 7 N -0.92 -51.48 11.30 21.45 0.24 -51.24 16 8 Si 0.93 44.04 29.54 68.60 2.03 46.06 16 9 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 10 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 11 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 12 C -0.07 -2.65 2.89 -10.72 -0.03 -2.68 16 13 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 14 C 0.07 2.41 5.22 86.65 0.45 2.87 16 15 N -0.51 -18.13 5.33 -713.18 -3.80 -21.93 16 16 C 0.03 0.79 9.29 127.69 1.19 1.98 16 17 C 0.03 1.16 5.58 38.28 0.21 1.37 16 18 C -0.08 -3.26 4.67 -19.49 -0.09 -3.35 16 19 C -0.10 -3.67 9.88 22.22 0.22 -3.45 16 20 C -0.10 -2.81 10.06 22.30 0.22 -2.58 16 21 C -0.15 -4.17 10.00 22.25 0.22 -3.95 16 22 C 0.08 2.67 7.32 22.55 0.17 2.83 16 23 F -0.15 -5.09 17.27 44.97 0.78 -4.31 16 24 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.06 2.93 5.99 -2.39 -0.01 2.91 16 26 H 0.03 1.50 7.33 -2.38 -0.02 1.48 16 27 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 28 H 0.08 3.45 6.30 -2.39 -0.02 3.44 16 29 H 0.10 2.99 7.76 -2.39 -0.02 2.97 16 30 H 0.09 2.14 8.11 -2.39 -0.02 2.12 16 31 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.12 4.32 8.06 -2.91 -0.02 4.30 16 34 H 0.17 3.40 8.06 -2.91 -0.02 3.38 16 35 H 0.16 3.51 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -60.23 288.04 4.12 -56.11 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: 1.08 Total: 9.29 kcal Atomic # 6 Polarization: -37.78 SS G_CDS: 3.80 Total: -33.97 kcal Atomic # 7 Polarization: -69.61 SS G_CDS: -3.56 Total: -73.17 kcal Atomic # 9 Polarization: -5.09 SS G_CDS: 0.78 Total: -4.31 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Total: -60.23 4.12 -56.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261053226.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.670 kcal (2) G-P(sol) polarization free energy of solvation -60.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds