Wall clock time and date at job start Mon Mar 30 2020 06:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46976 * 2 1 4 4 C 1.50695 * 109.47076 * 119.99856 * 2 1 3 5 5 H 1.08007 * 119.99607 * 119.99842 * 4 2 1 6 6 C 1.37874 * 120.00565 * 299.99891 * 4 2 1 7 7 N 1.31516 * 119.99773 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00459 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47524 * 89.99898 * 8 6 4 10 10 H 1.48500 * 109.47475 * 210.00069 * 8 6 4 11 11 H 1.48504 * 109.47081 * 330.00016 * 8 6 4 12 12 C 1.53001 * 109.46619 * 240.00147 * 2 1 3 13 13 H 1.08994 * 110.65478 * 57.85205 * 12 2 1 14 14 C 1.54590 * 110.73043 * 294.47408 * 12 2 1 15 15 N 1.47926 * 102.61680 * 216.15236 * 14 12 2 16 16 C 1.46899 * 110.99554 * 149.15612 * 15 14 12 17 17 C 1.40208 * 107.82323 * 27.38170 * 15 14 12 18 18 C 1.38901 * 110.93919 * 341.37269 * 17 15 14 19 19 C 1.37954 * 120.49330 * 180.73926 * 18 17 15 20 20 C 1.38302 * 120.11924 * 359.72842 * 19 18 17 21 21 C 1.38284 * 119.90563 * 359.72267 * 20 19 18 22 22 C 1.38112 * 120.22563 * 0.69475 * 21 20 19 23 23 F 1.35098 * 119.91719 * 179.72228 * 22 21 20 24 24 H 1.08997 * 109.47327 * 186.15210 * 1 2 3 25 25 H 1.09007 * 109.47191 * 306.14816 * 1 2 3 26 26 H 1.08996 * 109.47459 * 66.14632 * 1 2 3 27 27 H 0.97002 * 120.00487 * 179.97438 * 7 6 4 28 28 H 1.08998 * 110.78237 * 334.43441 * 14 12 2 29 29 H 1.09002 * 110.77705 * 97.87416 * 14 12 2 30 30 H 1.09003 * 109.47281 * 299.96947 * 16 15 14 31 31 H 1.09006 * 109.47382 * 59.97062 * 16 15 14 32 32 H 1.09001 * 109.47183 * 179.97438 * 16 15 14 33 33 H 1.07998 * 119.93811 * 179.70931 * 19 18 17 34 34 H 1.08008 * 120.04750 * 180.02562 * 20 19 18 35 35 H 1.07998 * 119.89028 * 180.43198 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3226 -1.1195 4.0079 9 1 3.6306 -0.5440 4.4118 10 1 1.3446 -0.9490 5.1123 11 1 2.4881 -2.5653 3.7122 12 6 2.0399 -0.7212 -1.2493 13 1 1.6564 -0.2451 -2.1516 14 6 1.6575 -2.2186 -1.2111 15 7 2.8328 -2.8682 -1.8315 16 6 3.0437 -4.2129 -1.2791 17 6 3.9474 -2.0496 -1.6004 18 6 3.5552 -0.7598 -1.2656 19 6 4.4979 0.2148 -1.0116 20 6 5.8455 -0.0877 -1.0831 21 6 6.2479 -1.3711 -1.4044 22 6 5.3087 -2.3487 -1.6681 23 9 5.7089 -3.5991 -1.9868 24 1 -0.3634 -1.0217 0.1101 25 1 -0.3634 0.6062 0.8299 26 1 -0.3634 0.4156 -0.9398 27 1 0.7082 1.1609 3.4844 28 1 1.5256 -2.5580 -0.1837 29 1 0.7584 -2.4032 -1.7990 30 1 3.2109 -4.1421 -0.2043 31 1 2.1632 -4.8265 -1.4702 32 1 3.9135 -4.6680 -1.7528 33 1 4.1829 1.2159 -0.7566 34 1 6.5826 0.6762 -0.8836 35 1 7.3003 -1.6087 -1.4533 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261053227.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:57 Heat of formation + Delta-G solvation = -27.778982 kcal Electronic energy + Delta-G solvation = -18777.390417 eV Core-core repulsion = 15882.015516 eV Total energy + Delta-G solvation = -2895.374901 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.83044 -41.64972 -37.77487 -36.49051 -33.77197 -31.43869 -30.62479 -29.22687 -27.18065 -26.36626 -24.24266 -22.97820 -22.41697 -20.83238 -18.58442 -17.71950 -17.31751 -17.13394 -16.83595 -16.49098 -15.94078 -15.64355 -15.28228 -14.95634 -14.44656 -14.15149 -13.93571 -13.43542 -13.29602 -13.19844 -12.90122 -12.80854 -12.64330 -12.49688 -12.28534 -12.12416 -12.06983 -11.51908 -11.25051 -10.87793 -10.72927 -10.39747 -9.50640 -8.67076 -8.06499 -6.14974 0.30618 0.38709 1.36427 1.39913 1.46549 2.42635 2.58265 2.90236 3.22954 3.38323 3.69610 3.82573 4.04505 4.19795 4.33414 4.35715 4.48241 4.53213 4.63349 4.82191 4.85481 4.92328 4.96504 5.08682 5.10109 5.15898 5.27551 5.35978 5.51256 5.62540 5.65083 5.72142 5.92577 5.98944 6.15090 6.24077 6.40400 6.92460 7.51026 8.98729 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.020992 B = 0.008766 C = 0.008335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.550221 B = 3193.403498 C = 3358.379521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.057 3.943 3 H 0.006 0.994 4 C -0.499 4.499 5 H 0.041 0.959 6 C 0.020 3.980 7 N -0.914 5.914 8 Si 0.933 3.067 9 H -0.280 1.280 10 H -0.284 1.284 11 H -0.276 1.276 12 C -0.046 4.046 13 H 0.083 0.917 14 C 0.058 3.942 15 N -0.480 5.480 16 C 0.011 3.989 17 C 0.036 3.964 18 C -0.087 4.087 19 C -0.095 4.095 20 C -0.112 4.112 21 C -0.137 4.137 22 C 0.053 3.947 23 F -0.148 7.148 24 H 0.031 0.969 25 H 0.052 0.948 26 H 0.032 0.968 27 H 0.258 0.742 28 H 0.062 0.938 29 H 0.101 0.899 30 H 0.022 0.978 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.125 0.875 34 H 0.164 0.836 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.612 -4.373 -7.607 10.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.038 3.962 3 H 0.024 0.976 4 C -0.538 4.538 5 H 0.059 0.941 6 C -0.178 4.178 7 N -0.554 5.554 8 Si 0.761 3.239 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.201 1.201 12 C -0.065 4.065 13 H 0.101 0.899 14 C -0.067 4.067 15 N -0.195 5.195 16 C -0.135 4.135 17 C -0.063 4.063 18 C -0.090 4.090 19 C -0.114 4.114 20 C -0.130 4.130 21 C -0.156 4.156 22 C 0.031 3.969 23 F -0.126 7.126 24 H 0.050 0.950 25 H 0.071 0.929 26 H 0.051 0.949 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.119 0.881 30 H 0.041 0.959 31 H 0.112 0.888 32 H 0.100 0.900 33 H 0.143 0.857 34 H 0.181 0.819 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 6.376 -4.470 -8.027 11.183 hybrid contribution 0.200 -0.493 1.795 1.872 sum 6.575 -4.962 -6.232 10.329 Atomic orbital electron populations 1.21659 0.97882 0.99704 0.99240 1.18552 0.92861 0.94217 0.90556 0.97636 1.21208 1.29763 1.11486 0.91301 0.94061 1.25494 0.95586 0.95668 1.01084 1.69998 1.37848 1.23997 1.23538 0.85935 0.78178 0.79128 0.80691 1.20577 1.21018 1.20094 1.21082 0.89986 0.95906 0.99483 0.89876 1.23358 0.92200 0.92598 0.98556 1.60813 1.01974 1.03593 1.53087 1.22676 1.04232 0.89186 0.97398 1.19907 0.90519 0.95067 1.00762 1.20594 0.96584 0.92985 0.98832 1.20697 0.92787 0.99393 0.98512 1.21169 0.95313 0.96492 1.00057 1.21112 0.99824 0.92415 1.02203 1.17343 0.90254 0.80851 1.08432 1.91371 1.91126 1.39051 1.91095 0.94999 0.92949 0.94912 0.93236 0.91966 0.88131 0.95879 0.88770 0.89959 0.85669 0.81870 0.81950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.73 8.62 71.98 0.62 -5.11 16 2 C 0.06 2.66 2.10 -11.54 -0.02 2.63 16 3 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 4 C -0.50 -25.83 6.90 25.60 0.18 -25.65 16 5 H 0.04 2.20 6.50 -2.91 -0.02 2.18 16 6 C 0.02 1.08 5.30 84.65 0.45 1.53 16 7 N -0.91 -50.93 11.39 21.45 0.24 -50.69 16 8 Si 0.93 43.19 29.54 68.60 2.03 45.22 16 9 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 10 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 12 C -0.05 -1.83 2.94 -10.72 -0.03 -1.86 16 13 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 14 C 0.06 2.17 5.34 86.65 0.46 2.63 16 15 N -0.48 -17.29 5.32 -713.12 -3.79 -21.08 16 16 C 0.01 0.36 9.09 127.69 1.16 1.52 16 17 C 0.04 1.37 5.96 38.27 0.23 1.60 16 18 C -0.09 -3.40 4.73 -19.49 -0.09 -3.50 16 19 C -0.10 -3.36 9.88 22.22 0.22 -3.14 16 20 C -0.11 -3.19 10.06 22.30 0.22 -2.97 16 21 C -0.14 -3.91 10.00 22.25 0.22 -3.68 16 22 C 0.05 1.81 7.16 22.55 0.16 1.97 16 23 F -0.15 -4.85 15.06 44.97 0.68 -4.17 16 24 H 0.03 1.37 7.66 -2.39 -0.02 1.35 16 25 H 0.05 2.66 6.26 -2.38 -0.01 2.64 16 26 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 28 H 0.06 2.60 5.91 -2.39 -0.01 2.58 16 29 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 30 H 0.02 0.78 8.09 -2.39 -0.02 0.76 16 31 H 0.09 2.49 8.14 -2.38 -0.02 2.47 16 32 H 0.08 2.47 6.12 -2.39 -0.01 2.45 16 33 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 34 H 0.16 3.42 8.06 -2.91 -0.02 3.40 16 35 H 0.16 3.49 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -58.46 284.42 4.02 -54.44 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: 1.08 Total: 10.30 kcal Atomic # 6 Polarization: -37.80 SS G_CDS: 3.78 Total: -34.02 kcal Atomic # 7 Polarization: -68.22 SS G_CDS: -3.55 Total: -71.77 kcal Atomic # 9 Polarization: -4.85 SS G_CDS: 0.68 Total: -4.17 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -58.46 4.02 -54.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261053227.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.660 kcal (2) G-P(sol) polarization free energy of solvation -58.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds