Wall clock time and date at job start Mon Mar 30 2020 06:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46941 * 2 1 4 4 N 1.46898 * 109.47164 * 119.99607 * 2 1 3 5 5 C 1.47906 * 110.99896 * 175.17791 * 4 2 1 6 6 C 1.54595 * 102.61822 * 94.58059 * 5 4 2 7 7 H 1.09002 * 110.73621 * 267.04193 * 6 5 4 8 8 C 1.50706 * 110.73490 * 143.90565 * 6 5 4 9 9 H 1.07996 * 120.00207 * 0.02562 * 8 6 5 10 10 C 1.37880 * 119.99639 * 179.97438 * 8 6 5 11 11 N 1.31521 * 120.00350 * 0.02562 * 10 8 6 12 12 Si 1.86804 * 119.99822 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.46997 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.46842 * 120.00472 * 12 10 8 15 15 H 1.48499 * 109.47159 * 240.00354 * 12 10 8 16 16 C 1.51576 * 102.85478 * 25.56679 * 6 5 4 17 17 C 1.37997 * 131.53316 * 163.79574 * 16 6 5 18 18 C 1.38271 * 120.12433 * 180.14464 * 17 16 6 19 19 C 1.38328 * 119.89319 * 0.47533 * 18 17 16 20 20 C 1.38065 * 120.23481 * 359.37350 * 19 18 17 21 21 F 1.35097 * 119.92166 * 180.34918 * 20 19 18 22 22 C 1.38861 * 107.97115 * 343.95138 * 16 6 5 23 23 H 1.09002 * 109.47181 * 300.00222 * 1 2 3 24 24 H 1.09000 * 109.47073 * 60.00177 * 1 2 3 25 25 H 1.08998 * 109.47219 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47041 * 240.00315 * 2 1 3 27 27 H 1.09000 * 109.47093 * 299.99811 * 3 2 1 28 28 H 1.08995 * 109.47098 * 59.99613 * 3 2 1 29 29 H 1.08996 * 109.46833 * 180.02562 * 3 2 1 30 30 H 1.09005 * 110.78150 * 212.85814 * 5 4 2 31 31 H 1.08995 * 110.78591 * 336.10800 * 5 4 2 32 32 H 0.96994 * 119.99933 * 179.97438 * 11 10 8 33 33 H 1.07997 * 119.94146 * 0.37308 * 17 16 6 34 34 H 1.07995 * 120.05554 * 180.23674 * 18 17 16 35 35 H 1.08002 * 119.88479 * 179.65980 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 3.4936 -0.8135 1.1770 6 6 3.9463 0.4207 1.9906 7 1 4.1418 1.2667 1.3317 8 6 5.1645 0.0976 2.8168 9 1 5.5947 -0.8923 2.7803 10 6 5.7305 1.0661 3.6184 11 7 5.2070 2.2718 3.6625 12 14 7.2402 0.6655 4.6431 13 1 7.6302 -0.7495 4.4175 14 1 8.3594 1.5565 4.2448 15 1 6.9314 0.8711 6.0809 16 6 2.7508 0.6943 2.8814 17 6 2.6163 1.4572 4.0234 18 6 1.3926 1.5412 4.6617 19 6 0.3042 0.8509 4.1594 20 6 0.4321 0.0885 3.0155 21 9 -0.6367 -0.5774 2.5265 22 6 1.6631 0.0044 2.3627 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9564 0.8899 29 1 3.1299 1.4425 -0.0005 30 1 3.8134 -1.7354 1.6628 31 1 3.8701 -0.7659 0.1552 32 1 5.6049 2.9530 4.2267 33 1 3.4674 1.9927 4.4173 34 1 1.2877 2.1417 5.5532 35 1 -0.6502 0.9122 4.6612 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261054840.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:31 Heat of formation + Delta-G solvation = 0.080502 kcal Electronic energy + Delta-G solvation = -19138.886851 eV Core-core repulsion = 16244.720028 eV Total energy + Delta-G solvation = -2894.166823 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.15721 -40.21622 -36.36135 -33.90641 -32.16391 -29.68986 -28.57711 -27.96718 -26.69572 -24.38043 -22.11555 -21.73035 -20.11199 -19.30971 -16.86795 -16.51919 -15.53316 -15.42940 -15.10801 -14.61630 -14.20032 -14.07934 -13.49688 -13.41481 -12.78146 -12.38422 -12.14297 -11.89311 -11.63940 -11.58383 -11.30407 -11.09318 -10.97763 -10.78501 -10.72385 -10.54906 -10.37011 -9.97717 -9.77379 -9.39480 -8.62335 -8.54150 -7.59639 -7.05813 -6.22513 -4.27476 2.06871 2.19551 3.19108 3.28361 3.32150 4.24065 4.34879 4.57898 5.04019 5.12506 5.29414 5.50987 5.56251 5.68772 5.85098 5.92321 5.99404 6.14635 6.18195 6.26894 6.28175 6.30550 6.40561 6.46113 6.61352 6.68004 6.76528 6.93048 7.14560 7.31376 7.44960 7.58184 7.62938 7.73749 7.96331 8.10206 8.13454 8.74017 9.35636 10.83082 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.026846 B = 0.009053 C = 0.007661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.752594 B = 3092.134100 C = 3654.198460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.079 3.921 3 C -0.187 4.187 4 N -0.488 5.488 5 C 0.051 3.949 6 C 0.049 3.951 7 H 0.059 0.941 8 C -0.501 4.501 9 H 0.064 0.936 10 C 0.062 3.938 11 N -0.884 5.884 12 Si 0.896 3.104 13 H -0.272 1.272 14 H -0.283 1.283 15 H -0.282 1.282 16 C -0.038 4.038 17 C -0.093 4.093 18 C -0.128 4.128 19 C -0.170 4.170 20 C 0.081 3.919 21 F -0.150 7.150 22 C 0.031 3.969 23 H 0.064 0.936 24 H 0.051 0.949 25 H 0.059 0.941 26 H 0.079 0.921 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.264 0.736 33 H 0.172 0.828 34 H 0.117 0.883 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.257 -0.756 -2.873 6.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 C -0.246 4.246 4 N -0.206 5.206 5 C -0.075 4.075 6 C 0.030 3.970 7 H 0.076 0.924 8 C -0.538 4.538 9 H 0.082 0.918 10 C -0.139 4.139 11 N -0.524 5.524 12 Si 0.724 3.276 13 H -0.196 1.196 14 H -0.209 1.209 15 H -0.208 1.208 16 C -0.041 4.041 17 C -0.111 4.111 18 C -0.146 4.146 19 C -0.190 4.190 20 C 0.061 3.939 21 F -0.129 7.129 22 C -0.065 4.065 23 H 0.083 0.917 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.097 0.903 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.188 0.812 34 H 0.135 0.865 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.490 -1.160 -2.891 7.199 hybrid contribution 0.817 0.480 0.586 1.114 sum -5.673 -0.680 -2.305 6.161 Atomic orbital electron populations 1.22052 0.94679 1.02172 1.01797 1.21784 0.95591 0.92959 0.92360 1.22691 1.02805 0.97311 1.01743 1.60600 1.13588 1.46584 0.99811 1.23276 0.83608 1.00576 1.00057 1.19172 0.91544 0.93606 0.92699 0.92360 1.21130 1.10017 0.97886 1.24809 0.91769 1.24992 0.97382 0.94915 0.96605 1.69772 1.39851 1.02886 1.39864 0.86448 0.82484 0.78660 0.80004 1.19636 1.20868 1.20780 1.21583 0.94966 0.91882 0.95685 1.22035 0.98093 0.97327 0.93644 1.21040 0.92922 1.00341 1.00345 1.20655 1.00141 1.01399 0.96759 1.17074 0.82055 0.99078 0.95735 1.91367 1.54794 1.79315 1.87445 1.19588 0.93308 0.98576 0.95041 0.91724 0.93032 0.92213 0.90285 0.93107 0.92135 0.91026 0.90155 0.91452 0.92638 0.81159 0.86472 0.86230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 8.11 37.16 0.30 -2.10 16 2 C 0.08 1.38 2.83 -67.71 -0.19 1.19 16 3 C -0.19 -3.29 7.88 37.16 0.29 -3.00 16 4 N -0.49 -9.82 5.10 -161.42 -0.82 -10.65 16 5 C 0.05 1.05 6.10 -2.43 -0.01 1.03 16 6 C 0.05 1.14 2.05 -91.65 -0.19 0.95 16 7 H 0.06 1.46 6.01 -51.93 -0.31 1.15 16 8 C -0.50 -12.77 8.50 -34.44 -0.29 -13.06 16 9 H 0.06 1.63 7.62 -52.49 -0.40 1.23 16 10 C 0.06 1.56 5.04 -17.82 -0.09 1.47 16 11 N -0.88 -22.80 9.83 55.43 0.54 -22.26 16 12 Si 0.90 19.97 29.54 -169.99 -5.02 14.95 16 13 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 14 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 16 C -0.04 -0.89 4.69 -104.05 -0.49 -1.38 16 17 C -0.09 -2.11 9.19 -39.66 -0.36 -2.47 16 18 C -0.13 -2.48 10.06 -39.54 -0.40 -2.88 16 19 C -0.17 -3.18 10.00 -39.61 -0.40 -3.58 16 20 C 0.08 1.65 6.20 -39.14 -0.24 1.41 16 21 F -0.15 -2.93 14.60 2.25 0.03 -2.90 16 22 C 0.03 0.67 4.19 -83.29 -0.35 0.32 16 23 H 0.06 1.14 4.92 -51.93 -0.26 0.88 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.95 8.12 -51.93 -0.42 0.53 16 26 H 0.08 1.24 7.99 -51.93 -0.41 0.83 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 1.19 6.66 -51.93 -0.35 0.85 16 29 H 0.07 1.34 5.23 -51.93 -0.27 1.07 16 30 H 0.08 1.69 7.78 -51.93 -0.40 1.28 16 31 H 0.07 1.24 7.63 -51.93 -0.40 0.84 16 32 H 0.26 6.48 8.31 -40.82 -0.34 6.14 16 33 H 0.17 4.18 4.84 -52.49 -0.25 3.92 16 34 H 0.12 1.93 8.06 -52.49 -0.42 1.51 16 35 H 0.12 1.89 8.06 -52.49 -0.42 1.46 16 LS Contribution 272.76 15.07 4.11 4.11 Total: -1.00 -26.06 272.76 -7.88 -33.94 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -4.30 Total: 4.89 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: -2.42 Total: -22.08 kcal Atomic # 7 Polarization: -32.62 SS G_CDS: -0.28 Total: -32.90 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.03 Total: -2.90 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -26.06 -7.88 -33.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261054840.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.021 kcal (2) G-P(sol) polarization free energy of solvation -26.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds