Wall clock time and date at job start Mon Mar 30 2020 06:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46941 * 2 1 4 4 N 1.46898 * 109.47164 * 119.99607 * 2 1 3 5 5 C 1.47906 * 110.99896 * 175.17791 * 4 2 1 6 6 C 1.54595 * 102.61822 * 94.58059 * 5 4 2 7 7 H 1.09002 * 110.73621 * 267.04193 * 6 5 4 8 8 C 1.50706 * 110.73490 * 143.90565 * 6 5 4 9 9 H 1.07996 * 120.00207 * 0.02562 * 8 6 5 10 10 C 1.37880 * 119.99639 * 179.97438 * 8 6 5 11 11 N 1.31521 * 120.00350 * 0.02562 * 10 8 6 12 12 Si 1.86804 * 119.99822 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.46997 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.46842 * 120.00472 * 12 10 8 15 15 H 1.48499 * 109.47159 * 240.00354 * 12 10 8 16 16 C 1.51576 * 102.85478 * 25.56679 * 6 5 4 17 17 C 1.37997 * 131.53316 * 163.79574 * 16 6 5 18 18 C 1.38271 * 120.12433 * 180.14464 * 17 16 6 19 19 C 1.38328 * 119.89319 * 0.47533 * 18 17 16 20 20 C 1.38065 * 120.23481 * 359.37350 * 19 18 17 21 21 F 1.35097 * 119.92166 * 180.34918 * 20 19 18 22 22 C 1.38861 * 107.97115 * 343.95138 * 16 6 5 23 23 H 1.09002 * 109.47181 * 300.00222 * 1 2 3 24 24 H 1.09000 * 109.47073 * 60.00177 * 1 2 3 25 25 H 1.08998 * 109.47219 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47041 * 240.00315 * 2 1 3 27 27 H 1.09000 * 109.47093 * 299.99811 * 3 2 1 28 28 H 1.08995 * 109.47098 * 59.99613 * 3 2 1 29 29 H 1.08996 * 109.46833 * 180.02562 * 3 2 1 30 30 H 1.09005 * 110.78150 * 212.85814 * 5 4 2 31 31 H 1.08995 * 110.78591 * 336.10800 * 5 4 2 32 32 H 0.96994 * 119.99933 * 179.97438 * 11 10 8 33 33 H 1.07997 * 119.94146 * 0.37308 * 17 16 6 34 34 H 1.07995 * 120.05554 * 180.23674 * 18 17 16 35 35 H 1.08002 * 119.88479 * 179.65980 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 3.4936 -0.8135 1.1770 6 6 3.9463 0.4207 1.9906 7 1 4.1418 1.2667 1.3317 8 6 5.1645 0.0976 2.8168 9 1 5.5947 -0.8923 2.7803 10 6 5.7305 1.0661 3.6184 11 7 5.2070 2.2718 3.6625 12 14 7.2402 0.6655 4.6431 13 1 7.6302 -0.7495 4.4175 14 1 8.3594 1.5565 4.2448 15 1 6.9314 0.8711 6.0809 16 6 2.7508 0.6943 2.8814 17 6 2.6163 1.4572 4.0234 18 6 1.3926 1.5412 4.6617 19 6 0.3042 0.8509 4.1594 20 6 0.4321 0.0885 3.0155 21 9 -0.6367 -0.5774 2.5265 22 6 1.6631 0.0044 2.3627 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9564 0.8899 29 1 3.1299 1.4425 -0.0005 30 1 3.8134 -1.7354 1.6628 31 1 3.8701 -0.7659 0.1552 32 1 5.6049 2.9530 4.2267 33 1 3.4674 1.9927 4.4173 34 1 1.2877 2.1417 5.5532 35 1 -0.6502 0.9122 4.6612 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261054840.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:31 Heat of formation + Delta-G solvation = -13.386250 kcal Electronic energy + Delta-G solvation = -19139.470814 eV Core-core repulsion = 16244.720028 eV Total energy + Delta-G solvation = -2894.750786 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.71100 -41.81002 -37.90182 -35.65884 -33.80714 -31.35495 -30.18097 -29.62420 -28.09869 -26.17773 -23.72265 -23.26903 -21.82347 -20.81145 -18.70519 -18.09103 -17.11282 -17.03498 -16.72747 -16.38456 -15.75679 -15.64727 -15.00666 -14.97888 -14.32269 -14.12347 -13.70705 -13.50318 -13.20793 -13.10249 -12.85835 -12.73905 -12.53969 -12.38747 -12.33487 -12.17964 -11.83942 -11.62462 -11.47736 -11.16882 -10.46894 -10.22653 -9.25364 -8.66024 -8.14868 -6.25423 0.46265 0.58424 1.40641 1.44933 1.54171 2.40669 2.78729 2.92317 3.12838 3.54935 3.90422 4.09099 4.14888 4.21662 4.35092 4.43873 4.58940 4.61290 4.70025 4.70954 4.78176 4.91325 4.92146 4.96070 5.04286 5.25419 5.33633 5.39779 5.51341 5.55004 5.74081 5.80257 5.97434 6.02945 6.21167 6.31445 6.49725 6.80506 7.39203 8.89792 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.026846 B = 0.009053 C = 0.007661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.752594 B = 3092.134100 C = 3654.198460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.075 3.925 3 C -0.177 4.177 4 N -0.491 5.491 5 C 0.058 3.942 6 C 0.048 3.952 7 H 0.035 0.965 8 C -0.523 4.523 9 H 0.057 0.943 10 C 0.024 3.976 11 N -0.901 5.901 12 Si 0.952 3.048 13 H -0.272 1.272 14 H -0.280 1.280 15 H -0.280 1.280 16 C -0.066 4.066 17 C -0.120 4.120 18 C -0.121 4.121 19 C -0.158 4.158 20 C 0.074 3.926 21 F -0.145 7.145 22 C 0.026 3.974 23 H 0.047 0.953 24 H 0.079 0.921 25 H 0.059 0.941 26 H 0.100 0.900 27 H 0.078 0.922 28 H 0.033 0.967 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.265 0.735 33 H 0.151 0.849 34 H 0.149 0.851 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.541 -1.033 -2.944 8.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.030 4.030 3 C -0.236 4.236 4 N -0.209 5.209 5 C -0.068 4.068 6 C 0.029 3.971 7 H 0.052 0.948 8 C -0.561 4.561 9 H 0.075 0.925 10 C -0.175 4.175 11 N -0.540 5.540 12 Si 0.778 3.222 13 H -0.196 1.196 14 H -0.206 1.206 15 H -0.206 1.206 16 C -0.069 4.069 17 C -0.138 4.138 18 C -0.140 4.140 19 C -0.177 4.177 20 C 0.053 3.947 21 F -0.124 7.124 22 C -0.070 4.070 23 H 0.066 0.934 24 H 0.098 0.902 25 H 0.078 0.922 26 H 0.118 0.882 27 H 0.097 0.903 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.074 0.926 33 H 0.168 0.832 34 H 0.166 0.834 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -7.783 -1.438 -2.972 8.454 hybrid contribution 1.164 0.591 0.591 1.433 sum -6.619 -0.847 -2.380 7.085 Atomic orbital electron populations 1.21991 0.93343 1.02332 1.02328 1.21975 0.96641 0.92561 0.91860 1.22568 1.01534 0.97736 1.01732 1.60656 1.12892 1.46889 1.00494 1.23160 0.84325 0.98812 1.00534 1.19063 0.91475 0.93874 0.92669 0.94768 1.21379 1.11284 0.97734 1.25717 0.92475 1.25603 0.99578 0.94885 0.97440 1.69892 1.40590 1.03375 1.40144 0.85590 0.79704 0.78307 0.78581 1.19603 1.20555 1.20601 1.21568 0.95435 0.93432 0.96445 1.22005 0.99094 0.98196 0.94544 1.21298 0.91703 1.00147 1.00832 1.21028 1.01337 0.99551 0.95781 1.17252 0.81836 0.99408 0.96188 1.91380 1.54286 1.79228 1.87468 1.19710 0.93466 0.98346 0.95512 0.93439 0.90234 0.92168 0.88173 0.90335 0.94740 0.92837 0.91063 0.89571 0.92589 0.83227 0.83372 0.82524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.22 8.11 71.98 0.58 -3.64 16 2 C 0.08 2.48 2.83 44.92 0.13 2.61 16 3 C -0.18 -6.11 7.88 71.98 0.57 -5.54 16 4 N -0.49 -19.44 5.10 -664.60 -3.39 -22.83 16 5 C 0.06 2.40 6.10 86.65 0.53 2.93 16 6 C 0.05 2.33 2.05 -11.46 -0.02 2.30 16 7 H 0.03 1.80 6.01 -2.39 -0.01 1.79 16 8 C -0.52 -27.42 8.50 25.60 0.22 -27.20 16 9 H 0.06 2.98 7.62 -2.91 -0.02 2.95 16 10 C 0.02 1.23 5.04 84.65 0.43 1.66 16 11 N -0.90 -47.60 9.83 21.45 0.21 -47.39 16 12 Si 0.95 41.48 29.54 68.60 2.03 43.51 16 13 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 14 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 15 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 16 C -0.07 -3.11 4.69 -19.49 -0.09 -3.20 16 17 C -0.12 -5.51 9.19 22.22 0.20 -5.30 16 18 C -0.12 -4.52 10.06 22.30 0.22 -4.30 16 19 C -0.16 -5.51 10.00 22.25 0.22 -5.28 16 20 C 0.07 2.89 6.20 22.55 0.14 3.03 16 21 F -0.14 -5.33 14.60 44.97 0.66 -4.68 16 22 C 0.03 1.12 4.19 38.28 0.16 1.28 16 23 H 0.05 1.57 4.92 -2.39 -0.01 1.56 16 24 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.06 1.77 8.12 -2.39 -0.02 1.75 16 26 H 0.10 2.89 7.99 -2.39 -0.02 2.87 16 27 H 0.08 2.20 8.14 -2.39 -0.02 2.19 16 28 H 0.03 1.35 6.66 -2.39 -0.02 1.33 16 29 H 0.05 2.03 5.23 -2.39 -0.01 2.01 16 30 H 0.07 3.03 7.78 -2.38 -0.02 3.01 16 31 H 0.09 3.15 7.63 -2.39 -0.02 3.13 16 32 H 0.26 13.28 8.31 -92.71 -0.77 12.51 16 33 H 0.15 7.54 4.84 -2.91 -0.01 7.52 16 34 H 0.15 4.49 8.06 -2.91 -0.02 4.47 16 35 H 0.16 4.27 8.06 -2.91 -0.02 4.25 16 Total: -1.00 -56.31 272.76 3.89 -52.42 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: 1.10 Total: 19.61 kcal Atomic # 6 Polarization: -43.94 SS G_CDS: 3.29 Total: -40.65 kcal Atomic # 7 Polarization: -67.04 SS G_CDS: -3.18 Total: -70.22 kcal Atomic # 9 Polarization: -5.33 SS G_CDS: 0.66 Total: -4.68 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Total: -56.31 3.89 -52.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261054840.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.038 kcal (2) G-P(sol) polarization free energy of solvation -56.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds