Wall clock time and date at job start Mon Mar 30 2020 06:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47257 * 2 1 4 4 N 1.46899 * 109.46740 * 119.99540 * 2 1 3 5 5 C 1.47911 * 111.00492 * 290.85579 * 4 2 1 6 6 C 1.54589 * 102.78948 * 265.39578 * 5 4 2 7 7 H 1.08997 * 110.73563 * 92.89273 * 6 5 4 8 8 C 1.50705 * 110.73776 * 216.20772 * 6 5 4 9 9 H 1.08002 * 119.99629 * 35.34284 * 8 6 5 10 10 C 1.37872 * 120.00273 * 215.35024 * 8 6 5 11 11 N 1.31511 * 120.00102 * 174.02535 * 10 8 6 12 12 Si 1.86803 * 119.99863 * 354.02183 * 10 8 6 13 13 H 1.48494 * 109.47096 * 93.73707 * 12 10 8 14 14 H 1.48496 * 109.46958 * 213.73652 * 12 10 8 15 15 H 1.48502 * 109.47088 * 333.73690 * 12 10 8 16 16 C 1.51884 * 102.72440 * 334.67574 * 6 5 4 17 17 C 1.37993 * 131.46624 * 196.26269 * 16 6 5 18 18 C 1.38267 * 120.12241 * 179.10427 * 17 16 6 19 19 C 1.38325 * 119.90037 * 359.97438 * 18 17 16 20 20 C 1.38072 * 120.23248 * 0.14669 * 19 18 17 21 21 F 1.35093 * 119.92003 * 180.02562 * 20 19 18 22 22 C 1.38859 * 108.03572 * 15.70201 * 16 6 5 23 23 H 1.09004 * 109.47278 * 300.00247 * 1 2 3 24 24 H 1.08999 * 109.47027 * 59.99997 * 1 2 3 25 25 H 1.08997 * 109.47705 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47043 * 239.99402 * 2 1 3 27 27 H 1.09001 * 109.47440 * 173.63517 * 3 2 1 28 28 H 1.09000 * 109.47037 * 293.63240 * 3 2 1 29 29 H 1.09000 * 109.47599 * 53.63557 * 3 2 1 30 30 H 1.09002 * 110.77601 * 23.77304 * 5 4 2 31 31 H 1.09004 * 110.78060 * 147.01398 * 5 4 2 32 32 H 0.96997 * 119.99891 * 180.02562 * 11 10 8 33 33 H 1.07998 * 119.93906 * 359.09951 * 17 16 6 34 34 H 1.08000 * 120.04481 * 180.02562 * 18 17 16 35 35 H 1.07994 * 119.88256 * 180.16312 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 1.7328 0.0933 2.4194 6 6 3.0426 0.8866 2.6313 7 1 2.9836 1.8639 2.1524 8 6 3.3490 1.0282 4.1001 9 1 3.1082 0.2257 4.7817 10 6 3.9366 2.1820 4.5737 11 7 4.0968 2.3551 5.8675 12 14 4.5052 3.4994 3.3776 13 1 3.4295 4.5084 3.2045 14 1 5.7228 4.1606 3.9117 15 1 4.8153 2.8764 2.0657 16 6 4.0776 0.0134 1.9434 17 6 5.4553 -0.0025 2.0190 18 6 6.1796 -0.9279 1.2905 19 6 5.5210 -1.8395 0.4851 20 6 4.1428 -1.8267 0.4036 21 9 3.5061 -2.7203 -0.3846 22 6 3.4058 -0.8926 1.1335 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 3.1241 1.4446 0.1139 28 1 1.7727 1.9223 -0.9415 29 1 1.5867 1.9882 0.8275 30 1 0.8934 0.7692 2.2556 31 1 1.5378 -0.5647 3.2663 32 1 4.5099 3.1670 6.2006 33 1 5.9689 0.7093 2.6483 34 1 7.2579 -0.9395 1.3509 35 1 6.0869 -2.5639 -0.0818 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261054841.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:35 Heat of formation + Delta-G solvation = -7.028138 kcal Electronic energy + Delta-G solvation = -18924.638437 eV Core-core repulsion = 16030.163359 eV Total energy + Delta-G solvation = -2894.475077 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.31927 -40.48097 -36.81528 -33.73860 -32.27101 -30.61784 -28.65440 -28.17003 -26.92110 -24.76993 -22.29651 -21.70253 -20.28114 -19.31806 -17.35144 -16.74559 -16.01740 -15.77742 -15.21378 -14.72670 -14.33756 -14.17824 -13.86013 -13.26998 -13.00132 -12.89142 -12.53736 -11.99718 -11.93482 -11.77900 -11.71521 -11.51644 -11.18314 -10.96489 -10.77896 -10.54789 -10.42095 -10.08289 -9.90811 -9.55465 -8.91289 -8.72694 -8.01022 -7.33728 -6.24575 -4.24419 1.70708 1.81799 3.13991 3.25240 3.26965 4.06260 4.19177 4.25685 4.82041 4.98742 5.12389 5.29060 5.33887 5.40858 5.57360 5.67186 5.78575 5.83314 5.91794 5.94593 6.02505 6.04980 6.13764 6.23063 6.35368 6.46361 6.53452 6.63849 6.70136 6.92695 7.00688 7.14940 7.17466 7.49641 7.55168 7.79991 8.33688 8.81430 9.36460 10.87809 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.020702 B = 0.010434 C = 0.008205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.226543 B = 2682.913036 C = 3411.874945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.079 3.921 3 C -0.188 4.188 4 N -0.486 5.486 5 C 0.056 3.944 6 C 0.020 3.980 7 H 0.060 0.940 8 C -0.504 4.504 9 H 0.079 0.921 10 C 0.078 3.922 11 N -0.889 5.889 12 Si 0.863 3.137 13 H -0.275 1.275 14 H -0.284 1.284 15 H -0.259 1.259 16 C -0.064 4.064 17 C -0.095 4.095 18 C -0.111 4.111 19 C -0.164 4.164 20 C 0.094 3.906 21 F -0.147 7.147 22 C 0.040 3.960 23 H 0.059 0.941 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.266 0.734 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.991 -3.046 -11.571 12.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.028 4.028 3 C -0.247 4.247 4 N -0.204 5.204 5 C -0.070 4.070 6 C 0.001 3.999 7 H 0.077 0.923 8 C -0.541 4.541 9 H 0.097 0.903 10 C -0.125 4.125 11 N -0.526 5.526 12 Si 0.690 3.310 13 H -0.201 1.201 14 H -0.210 1.210 15 H -0.183 1.183 16 C -0.067 4.067 17 C -0.114 4.114 18 C -0.129 4.129 19 C -0.183 4.183 20 C 0.073 3.927 21 F -0.126 7.126 22 C -0.057 4.057 23 H 0.078 0.922 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.094 0.906 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.076 0.924 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.294 -3.431 -11.435 12.008 hybrid contribution 0.787 1.269 -0.593 1.607 sum -0.507 -2.162 -12.028 12.231 Atomic orbital electron populations 1.21842 0.94098 1.02278 1.01638 1.21742 0.95724 0.92651 0.92643 1.22706 1.02312 0.97606 1.02031 1.60571 1.09848 1.46140 1.03798 1.23311 0.98461 0.95252 0.89947 1.19679 0.88998 0.94114 0.97150 0.92254 1.20768 1.40850 1.03190 0.89313 0.90329 1.25048 0.94915 0.97740 0.94838 1.69888 1.43065 1.27292 1.12339 0.87057 0.79150 0.82412 0.82398 1.20107 1.20990 1.18342 1.21955 0.94829 0.95552 0.94406 1.20555 0.93174 0.98910 0.98788 1.20857 0.99528 0.95498 0.97034 1.20673 0.91608 1.02446 1.03594 1.17205 0.89954 0.90215 0.95353 1.91413 1.82501 1.66239 1.72470 1.19551 0.90065 0.96632 0.99416 0.92163 0.92439 0.91986 0.90600 0.92042 0.92632 0.91477 0.90620 0.89500 0.92365 0.85853 0.85657 0.85424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.22 37.16 0.34 -1.53 16 2 C 0.08 1.26 2.88 -67.71 -0.20 1.07 16 3 C -0.19 -3.00 7.45 37.16 0.28 -2.72 16 4 N -0.49 -9.17 5.05 -161.41 -0.82 -9.99 16 5 C 0.06 1.12 5.78 -2.43 -0.01 1.10 16 6 C 0.02 0.45 1.63 -91.50 -0.15 0.30 16 7 H 0.06 1.32 3.44 -51.93 -0.18 1.15 16 8 C -0.50 -13.28 8.80 -34.44 -0.30 -13.59 16 9 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 10 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 11 N -0.89 -25.77 13.96 55.43 0.77 -25.00 16 12 Si 0.86 20.07 26.74 -169.99 -4.55 15.53 16 13 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.26 -5.76 6.80 56.52 0.38 -5.38 16 16 C -0.06 -1.37 4.71 -103.90 -0.49 -1.86 16 17 C -0.10 -1.91 9.88 -39.66 -0.39 -2.30 16 18 C -0.11 -1.84 10.06 -39.54 -0.40 -2.23 16 19 C -0.16 -2.68 10.00 -39.61 -0.40 -3.08 16 20 C 0.09 1.74 7.32 -39.14 -0.29 1.45 16 21 F -0.15 -2.69 17.27 2.25 0.04 -2.65 16 22 C 0.04 0.80 5.00 -83.29 -0.42 0.39 16 23 H 0.06 0.80 6.54 -51.93 -0.34 0.46 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 27 H 0.06 1.10 6.02 -51.93 -0.31 0.79 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 1.10 5.84 -51.93 -0.30 0.80 16 30 H 0.08 1.36 5.34 -51.93 -0.28 1.08 16 31 H 0.09 1.82 7.86 -51.93 -0.41 1.41 16 32 H 0.27 7.24 8.31 -40.82 -0.34 6.91 16 33 H 0.12 2.52 7.74 -52.49 -0.41 2.12 16 34 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 35 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 279.91 15.07 4.22 4.22 Total: -1.00 -28.38 279.91 -7.18 -35.56 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -4.33 Total: 3.32 kcal Atomic # 6 Polarization: -18.47 SS G_CDS: -2.52 Total: -20.99 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: -0.04 Total: -34.99 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.04 Total: -2.65 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -4.55 Total: 15.53 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -28.38 -7.18 -35.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261054841.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.534 kcal (2) G-P(sol) polarization free energy of solvation -28.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds