Wall clock time and date at job start Mon Mar 30 2020 06:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47257 * 2 1 4 4 N 1.46899 * 109.46740 * 119.99540 * 2 1 3 5 5 C 1.47911 * 111.00492 * 290.85579 * 4 2 1 6 6 C 1.54589 * 102.78948 * 265.39578 * 5 4 2 7 7 H 1.08997 * 110.73563 * 92.89273 * 6 5 4 8 8 C 1.50705 * 110.73776 * 216.20772 * 6 5 4 9 9 H 1.08002 * 119.99629 * 35.34284 * 8 6 5 10 10 C 1.37872 * 120.00273 * 215.35024 * 8 6 5 11 11 N 1.31511 * 120.00102 * 174.02535 * 10 8 6 12 12 Si 1.86803 * 119.99863 * 354.02183 * 10 8 6 13 13 H 1.48494 * 109.47096 * 93.73707 * 12 10 8 14 14 H 1.48496 * 109.46958 * 213.73652 * 12 10 8 15 15 H 1.48502 * 109.47088 * 333.73690 * 12 10 8 16 16 C 1.51884 * 102.72440 * 334.67574 * 6 5 4 17 17 C 1.37993 * 131.46624 * 196.26269 * 16 6 5 18 18 C 1.38267 * 120.12241 * 179.10427 * 17 16 6 19 19 C 1.38325 * 119.90037 * 359.97438 * 18 17 16 20 20 C 1.38072 * 120.23248 * 0.14669 * 19 18 17 21 21 F 1.35093 * 119.92003 * 180.02562 * 20 19 18 22 22 C 1.38859 * 108.03572 * 15.70201 * 16 6 5 23 23 H 1.09004 * 109.47278 * 300.00247 * 1 2 3 24 24 H 1.08999 * 109.47027 * 59.99997 * 1 2 3 25 25 H 1.08997 * 109.47705 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47043 * 239.99402 * 2 1 3 27 27 H 1.09001 * 109.47440 * 173.63517 * 3 2 1 28 28 H 1.09000 * 109.47037 * 293.63240 * 3 2 1 29 29 H 1.09000 * 109.47599 * 53.63557 * 3 2 1 30 30 H 1.09002 * 110.77601 * 23.77304 * 5 4 2 31 31 H 1.09004 * 110.78060 * 147.01398 * 5 4 2 32 32 H 0.96997 * 119.99891 * 180.02562 * 11 10 8 33 33 H 1.07998 * 119.93906 * 359.09951 * 17 16 6 34 34 H 1.08000 * 120.04481 * 180.02562 * 18 17 16 35 35 H 1.07994 * 119.88256 * 180.16312 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 1.7328 0.0933 2.4194 6 6 3.0426 0.8866 2.6313 7 1 2.9836 1.8639 2.1524 8 6 3.3490 1.0282 4.1001 9 1 3.1082 0.2257 4.7817 10 6 3.9366 2.1820 4.5737 11 7 4.0968 2.3551 5.8675 12 14 4.5052 3.4994 3.3776 13 1 3.4295 4.5084 3.2045 14 1 5.7228 4.1606 3.9117 15 1 4.8153 2.8764 2.0657 16 6 4.0776 0.0134 1.9434 17 6 5.4553 -0.0025 2.0190 18 6 6.1796 -0.9279 1.2905 19 6 5.5210 -1.8395 0.4851 20 6 4.1428 -1.8267 0.4036 21 9 3.5061 -2.7203 -0.3846 22 6 3.4058 -0.8926 1.1335 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 3.1241 1.4446 0.1139 28 1 1.7727 1.9223 -0.9415 29 1 1.5867 1.9882 0.8275 30 1 0.8934 0.7692 2.2556 31 1 1.5378 -0.5647 3.2663 32 1 4.5099 3.1670 6.2006 33 1 5.9689 0.7093 2.6483 34 1 7.2579 -0.9395 1.3509 35 1 6.0869 -2.5639 -0.0818 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261054841.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:34 Heat of formation + Delta-G solvation = -23.766610 kcal Electronic energy + Delta-G solvation = -18925.364271 eV Core-core repulsion = 16030.163359 eV Total energy + Delta-G solvation = -2895.200912 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.74403 -41.96642 -38.19384 -35.48828 -33.92415 -32.20540 -30.19417 -29.64741 -28.09079 -26.59926 -23.81525 -23.09162 -21.88465 -20.73909 -19.25818 -18.25573 -17.51449 -17.22397 -16.68113 -16.28234 -15.94261 -15.65459 -15.19397 -14.92711 -14.61908 -14.30401 -14.17538 -13.40016 -13.29803 -13.17112 -13.02772 -12.94159 -12.81490 -12.39571 -12.27111 -12.04343 -11.83997 -11.76854 -11.69253 -11.41665 -10.79143 -10.37960 -9.51147 -8.80678 -8.34333 -6.38081 0.26519 0.37293 1.28458 1.33283 1.43460 2.28765 2.64669 2.71934 2.99294 3.41988 3.84064 3.95703 4.03423 4.08949 4.21725 4.31451 4.34269 4.45928 4.53207 4.59905 4.69611 4.77569 4.84990 4.92496 5.00222 5.07630 5.21844 5.29542 5.30104 5.35832 5.46930 5.49627 5.71102 5.81188 6.05223 6.23282 6.35047 6.66598 7.26014 8.82205 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.020702 B = 0.010434 C = 0.008205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.226543 B = 2682.913036 C = 3411.874945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.076 3.924 3 C -0.184 4.184 4 N -0.490 5.490 5 C 0.063 3.937 6 C 0.022 3.978 7 H 0.062 0.938 8 C -0.503 4.503 9 H 0.032 0.968 10 C 0.026 3.974 11 N -0.940 5.940 12 Si 0.927 3.073 13 H -0.266 1.266 14 H -0.283 1.283 15 H -0.244 1.244 16 C -0.095 4.095 17 C -0.117 4.117 18 C -0.098 4.098 19 C -0.147 4.147 20 C 0.083 3.917 21 F -0.146 7.146 22 C 0.030 3.970 23 H 0.056 0.944 24 H 0.084 0.916 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.039 0.961 28 H 0.083 0.917 29 H 0.058 0.942 30 H 0.094 0.906 31 H 0.065 0.935 32 H 0.268 0.732 33 H 0.111 0.889 34 H 0.165 0.835 35 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.428 -3.200 -14.554 14.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.030 4.030 3 C -0.242 4.242 4 N -0.208 5.208 5 C -0.063 4.063 6 C 0.002 3.998 7 H 0.079 0.921 8 C -0.541 4.541 9 H 0.050 0.950 10 C -0.172 4.172 11 N -0.579 5.579 12 Si 0.751 3.249 13 H -0.192 1.192 14 H -0.209 1.209 15 H -0.167 1.167 16 C -0.098 4.098 17 C -0.136 4.136 18 C -0.117 4.117 19 C -0.166 4.166 20 C 0.062 3.938 21 F -0.125 7.125 22 C -0.067 4.067 23 H 0.075 0.925 24 H 0.103 0.897 25 H 0.080 0.920 26 H 0.097 0.903 27 H 0.058 0.942 28 H 0.102 0.898 29 H 0.077 0.923 30 H 0.112 0.888 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.129 0.871 34 H 0.182 0.818 35 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -0.744 -3.600 -14.444 14.904 hybrid contribution 0.613 1.180 0.325 1.369 sum -0.131 -2.420 -14.118 14.325 Atomic orbital electron populations 1.21824 0.91959 1.02702 1.02826 1.21902 0.97396 0.92423 0.91265 1.22646 1.00718 0.97644 1.03242 1.60600 1.09609 1.46295 1.04296 1.23118 0.98015 0.94971 0.90233 1.19561 0.90854 0.95033 0.94319 0.92070 1.20887 1.40207 1.01780 0.91215 0.94951 1.25809 0.95023 1.00112 0.96298 1.70032 1.44984 1.28374 1.14530 0.86032 0.78742 0.79524 0.80648 1.19150 1.20902 1.16710 1.21817 0.95385 0.96422 0.96181 1.20723 0.92967 1.00103 0.99763 1.21224 1.01307 0.93814 0.95315 1.21114 0.90779 1.02179 1.02483 1.17434 0.90853 0.90073 0.95487 1.91417 1.82668 1.66049 1.72329 1.19718 0.90415 0.96864 0.99715 0.92472 0.89726 0.91973 0.90338 0.94221 0.89781 0.92274 0.88785 0.91693 0.92289 0.87132 0.81765 0.81522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 9.22 71.98 0.66 -2.60 16 2 C 0.08 2.27 2.88 44.91 0.13 2.40 16 3 C -0.18 -5.48 7.45 71.98 0.54 -4.94 16 4 N -0.49 -18.15 5.05 -664.60 -3.36 -21.51 16 5 C 0.06 2.54 5.78 86.65 0.50 3.04 16 6 C 0.02 0.99 1.63 -11.36 -0.02 0.98 16 7 H 0.06 2.71 3.44 -2.39 -0.01 2.71 16 8 C -0.50 -27.72 8.80 25.60 0.23 -27.50 16 9 H 0.03 2.02 7.99 -2.91 -0.02 2.00 16 10 C 0.03 1.46 5.47 84.65 0.46 1.92 16 11 N -0.94 -56.67 13.96 21.44 0.30 -56.37 16 12 Si 0.93 41.94 26.74 68.60 1.83 43.77 16 13 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 14 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 15 H -0.24 -10.32 6.80 99.48 0.68 -9.64 16 16 C -0.10 -4.03 4.71 -19.39 -0.09 -4.12 16 17 C -0.12 -4.55 9.88 22.22 0.22 -4.33 16 18 C -0.10 -2.96 10.06 22.30 0.22 -2.73 16 19 C -0.15 -4.24 10.00 22.25 0.22 -4.02 16 20 C 0.08 2.87 7.32 22.56 0.17 3.04 16 21 F -0.15 -4.95 17.27 44.97 0.78 -4.17 16 22 C 0.03 1.16 5.00 38.27 0.19 1.35 16 23 H 0.06 1.41 6.54 -2.38 -0.02 1.39 16 24 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.08 2.32 8.07 -2.39 -0.02 2.30 16 27 H 0.04 1.35 6.02 -2.39 -0.01 1.34 16 28 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.06 1.83 5.84 -2.39 -0.01 1.82 16 30 H 0.09 3.36 5.34 -2.39 -0.01 3.34 16 31 H 0.06 2.85 7.86 -2.39 -0.02 2.83 16 32 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 33 H 0.11 4.51 7.74 -2.91 -0.02 4.49 16 34 H 0.16 3.62 8.06 -2.91 -0.02 3.59 16 35 H 0.17 3.54 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -63.70 279.91 4.05 -59.66 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 1.07 Total: 16.14 kcal Atomic # 6 Polarization: -40.94 SS G_CDS: 3.43 Total: -37.51 kcal Atomic # 7 Polarization: -74.82 SS G_CDS: -3.06 Total: -77.88 kcal Atomic # 9 Polarization: -4.95 SS G_CDS: 0.78 Total: -4.17 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 1.83 Total: 43.77 kcal Total: -63.70 4.05 -59.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261054841.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.889 kcal (2) G-P(sol) polarization free energy of solvation -63.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds