Wall clock time and date at job start Mon Mar 30 2020 07:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46805 * 111.00100 * 2 1 4 4 C 1.51713 * 111.10119 * 148.70122 * 3 2 1 5 5 C 1.51766 * 113.87158 * 67.60861 * 4 3 2 6 6 C 1.53167 * 110.60799 * 293.07279 * 5 4 3 7 7 H 1.09002 * 109.71458 * 202.93892 * 6 5 4 8 8 C 1.50703 * 109.70699 * 323.56837 * 6 5 4 9 9 H 1.07995 * 120.00234 * 94.50633 * 8 6 5 10 10 C 1.37885 * 119.99994 * 274.50271 * 8 6 5 11 11 N 1.31511 * 119.99657 * 359.97438 * 10 8 6 12 12 Si 1.86797 * 119.99979 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.46986 * 89.99673 * 12 10 8 14 14 H 1.48498 * 109.47293 * 209.99911 * 12 10 8 15 15 H 1.48504 * 109.47177 * 329.99914 * 12 10 8 16 16 C 1.51473 * 108.23343 * 83.25279 * 6 5 4 17 17 C 1.38172 * 119.71982 * 110.53133 * 16 6 5 18 18 C 1.38556 * 119.63934 * 179.97438 * 17 16 6 19 19 F 1.35096 * 119.95709 * 180.02562 * 18 17 16 20 20 C 1.38485 * 120.08734 * 359.97438 * 18 17 16 21 21 C 1.38146 * 120.17339 * 359.97438 * 20 18 17 22 22 C 1.37756 * 119.82293 * 290.50725 * 16 6 5 23 23 H 1.08995 * 109.47437 * 186.97635 * 1 2 3 24 24 H 1.08998 * 109.46977 * 306.97964 * 1 2 3 25 25 H 1.09001 * 109.46589 * 66.97589 * 1 2 3 26 26 H 1.08998 * 109.14658 * 269.16976 * 3 2 1 27 27 H 1.09000 * 109.14406 * 28.37177 * 3 2 1 28 28 H 1.09000 * 108.66742 * 306.43188 * 4 3 2 29 29 H 1.09001 * 108.55498 * 188.69780 * 4 3 2 30 30 H 1.09005 * 109.24289 * 172.79582 * 5 4 3 31 31 H 1.08997 * 109.24722 * 53.35392 * 5 4 3 32 32 H 0.97002 * 119.99546 * 179.97438 * 11 10 8 33 33 H 1.07995 * 120.18104 * 359.94200 * 17 16 6 34 34 H 1.08004 * 119.91509 * 179.97438 * 20 18 17 35 35 H 1.08002 * 120.18903 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9951 1.3705 0.0000 4 6 3.3199 1.4470 0.7353 5 6 4.4537 0.7203 0.0354 6 6 4.2044 -0.7909 0.0317 7 1 5.1505 -1.3194 -0.0857 8 6 3.5494 -1.2011 1.3255 9 1 2.4739 -1.2785 1.3855 10 6 4.3233 -1.4776 2.4327 11 7 5.6330 -1.3839 2.3595 12 14 3.5114 -1.9867 4.0362 13 1 3.3717 -3.4647 4.0728 14 1 4.3485 -1.5401 5.1785 15 1 2.1685 -1.3600 4.1318 16 6 3.2893 -1.1175 -1.1303 17 6 3.7820 -1.8185 -2.2142 18 6 2.9432 -2.1168 -3.2760 19 9 3.4181 -2.8023 -4.3388 20 6 1.6185 -1.7141 -3.2487 21 6 1.1278 -1.0143 -2.1634 22 6 1.9723 -0.7146 -1.0993 23 1 -0.3634 -1.0200 0.1248 24 1 -0.3633 0.6182 0.8209 25 1 -0.3632 0.4020 -0.9458 26 1 2.1372 1.6989 -1.0296 27 1 1.2774 2.0290 0.4893 28 1 3.1927 1.0175 1.7290 29 1 3.5952 2.4959 0.8459 30 1 5.3890 0.9289 0.5549 31 1 4.5272 1.0748 -0.9927 32 1 6.1774 -1.5780 3.1385 33 1 4.8153 -2.1317 -2.2340 34 1 0.9673 -1.9478 -4.0780 35 1 0.0946 -0.7004 -2.1416 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261055464.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:27 Heat of formation + Delta-G solvation = -7.288676 kcal Electronic energy + Delta-G solvation = -18880.573634 eV Core-core repulsion = 15986.087260 eV Total energy + Delta-G solvation = -2894.486375 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.35635 -39.91027 -36.10923 -34.85432 -31.84307 -30.71836 -29.20531 -27.46044 -25.59079 -24.10499 -23.31683 -21.57118 -19.89872 -19.23570 -16.98187 -16.34237 -16.03319 -15.27844 -15.07661 -14.67610 -14.53817 -14.00183 -13.71290 -13.25062 -12.75737 -12.61276 -12.53881 -12.11396 -11.91407 -11.67599 -11.45283 -11.27009 -10.83316 -10.71078 -10.51721 -10.11726 -10.05433 -9.71510 -9.18876 -8.97225 -8.47655 -8.31707 -8.13918 -7.09839 -5.91864 -3.87056 1.73806 1.89826 3.36785 3.43913 3.47976 4.13723 4.38565 4.54633 4.83055 5.23830 5.34982 5.42643 5.45895 5.54781 5.65620 5.82154 5.91907 5.99976 6.09318 6.11793 6.21997 6.39276 6.47853 6.63820 6.65872 6.69967 6.88922 6.98338 7.19979 7.30330 7.45492 7.59265 7.71024 7.86777 7.95755 8.11954 8.54514 9.25031 9.72253 11.19195 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.021183 B = 0.009172 C = 0.008005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.477048 B = 3051.977022 C = 3496.953192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.464 5.464 3 C 0.072 3.928 4 C -0.107 4.107 5 C -0.095 4.095 6 C 0.076 3.924 7 H 0.056 0.944 8 C -0.480 4.480 9 H 0.086 0.914 10 C 0.055 3.945 11 N -0.901 5.901 12 Si 0.887 3.113 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.273 1.273 16 C -0.014 4.014 17 C -0.146 4.146 18 C 0.069 3.931 19 F -0.153 7.153 20 C -0.161 4.161 21 C -0.151 4.151 22 C 0.101 3.899 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.027 0.973 26 H 0.029 0.971 27 H 0.063 0.937 28 H 0.092 0.908 29 H 0.035 0.965 30 H 0.060 0.940 31 H 0.019 0.981 32 H 0.257 0.743 33 H 0.131 0.869 34 H 0.121 0.879 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.770 3.838 -6.807 11.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.180 5.180 3 C -0.053 4.053 4 C -0.144 4.144 5 C -0.134 4.134 6 C 0.057 3.943 7 H 0.074 0.926 8 C -0.518 4.518 9 H 0.104 0.896 10 C -0.145 4.145 11 N -0.541 5.541 12 Si 0.716 3.284 13 H -0.211 1.211 14 H -0.217 1.217 15 H -0.198 1.198 16 C -0.016 4.016 17 C -0.165 4.165 18 C 0.049 3.951 19 F -0.132 7.132 20 C -0.180 4.180 21 C -0.172 4.172 22 C 0.005 3.995 23 H 0.088 0.912 24 H 0.087 0.913 25 H 0.046 0.954 26 H 0.048 0.952 27 H 0.081 0.919 28 H 0.111 0.889 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.038 0.962 32 H 0.067 0.933 33 H 0.149 0.851 34 H 0.139 0.861 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.458 3.626 -6.225 10.369 hybrid contribution -0.586 -0.199 0.038 0.620 sum -8.044 3.427 -6.186 10.710 Atomic orbital electron populations 1.22592 0.87863 1.02530 0.99922 1.59615 1.06322 1.13838 1.38199 1.21837 0.98020 0.86653 0.98813 1.21018 0.93042 0.97552 1.02809 1.21300 0.97728 0.98014 0.96320 1.18223 0.93954 0.92146 0.89989 0.92609 1.21379 0.94686 1.42837 0.92934 0.89595 1.24991 0.94729 0.95937 0.98832 1.69949 1.03802 1.50539 1.29836 0.86660 0.79425 0.78701 0.83602 1.21087 1.21731 1.19797 1.20292 0.94177 0.92107 0.94979 1.21087 1.00184 1.02125 0.93140 1.17720 0.93161 0.98523 0.85678 1.91416 1.88983 1.77822 1.54962 1.20683 0.93939 1.03329 1.00085 1.21329 1.00576 1.02259 0.93023 1.18696 0.93502 0.98733 0.88593 0.91219 0.91293 0.95439 0.95247 0.91886 0.88949 0.94591 0.92153 0.96219 0.93321 0.85079 0.86070 0.85473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 8.44 60.06 0.51 0.78 16 2 N -0.46 -8.54 2.36 -179.86 -0.43 -8.97 16 3 C 0.07 1.24 5.37 -4.53 -0.02 1.22 16 4 C -0.11 -2.09 5.24 -28.01 -0.15 -2.23 16 5 C -0.10 -2.07 5.47 -27.27 -0.15 -2.22 16 6 C 0.08 1.80 2.39 -92.46 -0.22 1.58 16 7 H 0.06 1.48 7.41 -51.93 -0.38 1.09 16 8 C -0.48 -12.37 5.56 -34.44 -0.19 -12.56 16 9 H 0.09 2.23 5.79 -52.49 -0.30 1.93 16 10 C 0.05 1.47 5.46 -17.82 -0.10 1.38 16 11 N -0.90 -25.42 12.97 55.43 0.72 -24.70 16 12 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 16 C -0.01 -0.29 4.60 -104.44 -0.48 -0.77 16 17 C -0.15 -2.88 9.67 -39.49 -0.38 -3.26 16 18 C 0.07 1.25 7.30 -39.37 -0.29 0.96 16 19 F -0.15 -2.71 17.27 2.25 0.04 -2.67 16 20 C -0.16 -2.63 10.01 -39.52 -0.40 -3.03 16 21 C -0.15 -2.50 9.00 -39.29 -0.35 -2.85 16 22 C 0.10 1.95 4.71 -83.76 -0.39 1.55 16 23 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 24 H 0.07 0.90 7.86 -51.93 -0.41 0.49 16 25 H 0.03 0.34 6.35 -51.93 -0.33 0.01 16 26 H 0.03 0.49 7.76 -51.93 -0.40 0.09 16 27 H 0.06 0.93 7.56 -51.93 -0.39 0.54 16 28 H 0.09 2.07 6.53 -51.93 -0.34 1.73 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.02 0.39 7.88 -51.93 -0.41 -0.02 16 32 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.13 2.50 7.97 -52.49 -0.42 2.08 16 34 H 0.12 1.66 8.06 -52.48 -0.42 1.23 16 35 H 0.13 1.76 5.73 -52.49 -0.30 1.46 16 LS Contribution 278.30 15.07 4.19 4.19 Total: -1.00 -27.80 278.30 -7.63 -35.42 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -4.52 Total: -0.01 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: -2.62 Total: -19.46 kcal Atomic # 7 Polarization: -33.96 SS G_CDS: 0.29 Total: -33.66 kcal Atomic # 9 Polarization: -2.71 SS G_CDS: 0.04 Total: -2.67 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -27.80 -7.63 -35.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261055464.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.133 kcal (2) G-P(sol) polarization free energy of solvation -27.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds