Wall clock time and date at job start Mon Mar 30 2020 07:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46805 * 111.00100 * 2 1 4 4 C 1.51713 * 111.10119 * 148.70122 * 3 2 1 5 5 C 1.51766 * 113.87158 * 67.60861 * 4 3 2 6 6 C 1.53167 * 110.60799 * 293.07279 * 5 4 3 7 7 H 1.09002 * 109.71458 * 202.93892 * 6 5 4 8 8 C 1.50703 * 109.70699 * 323.56837 * 6 5 4 9 9 H 1.07995 * 120.00234 * 94.50633 * 8 6 5 10 10 C 1.37885 * 119.99994 * 274.50271 * 8 6 5 11 11 N 1.31511 * 119.99657 * 359.97438 * 10 8 6 12 12 Si 1.86797 * 119.99979 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.46986 * 89.99673 * 12 10 8 14 14 H 1.48498 * 109.47293 * 209.99911 * 12 10 8 15 15 H 1.48504 * 109.47177 * 329.99914 * 12 10 8 16 16 C 1.51473 * 108.23343 * 83.25279 * 6 5 4 17 17 C 1.38172 * 119.71982 * 110.53133 * 16 6 5 18 18 C 1.38556 * 119.63934 * 179.97438 * 17 16 6 19 19 F 1.35096 * 119.95709 * 180.02562 * 18 17 16 20 20 C 1.38485 * 120.08734 * 359.97438 * 18 17 16 21 21 C 1.38146 * 120.17339 * 359.97438 * 20 18 17 22 22 C 1.37756 * 119.82293 * 290.50725 * 16 6 5 23 23 H 1.08995 * 109.47437 * 186.97635 * 1 2 3 24 24 H 1.08998 * 109.46977 * 306.97964 * 1 2 3 25 25 H 1.09001 * 109.46589 * 66.97589 * 1 2 3 26 26 H 1.08998 * 109.14658 * 269.16976 * 3 2 1 27 27 H 1.09000 * 109.14406 * 28.37177 * 3 2 1 28 28 H 1.09000 * 108.66742 * 306.43188 * 4 3 2 29 29 H 1.09001 * 108.55498 * 188.69780 * 4 3 2 30 30 H 1.09005 * 109.24289 * 172.79582 * 5 4 3 31 31 H 1.08997 * 109.24722 * 53.35392 * 5 4 3 32 32 H 0.97002 * 119.99546 * 179.97438 * 11 10 8 33 33 H 1.07995 * 120.18104 * 359.94200 * 17 16 6 34 34 H 1.08004 * 119.91509 * 179.97438 * 20 18 17 35 35 H 1.08002 * 120.18903 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9951 1.3705 0.0000 4 6 3.3199 1.4470 0.7353 5 6 4.4537 0.7203 0.0354 6 6 4.2044 -0.7909 0.0317 7 1 5.1505 -1.3194 -0.0857 8 6 3.5494 -1.2011 1.3255 9 1 2.4739 -1.2785 1.3855 10 6 4.3233 -1.4776 2.4327 11 7 5.6330 -1.3839 2.3595 12 14 3.5114 -1.9867 4.0362 13 1 3.3717 -3.4647 4.0728 14 1 4.3485 -1.5401 5.1785 15 1 2.1685 -1.3600 4.1318 16 6 3.2893 -1.1175 -1.1303 17 6 3.7820 -1.8185 -2.2142 18 6 2.9432 -2.1168 -3.2760 19 9 3.4181 -2.8023 -4.3388 20 6 1.6185 -1.7141 -3.2487 21 6 1.1278 -1.0143 -2.1634 22 6 1.9723 -0.7146 -1.0993 23 1 -0.3634 -1.0200 0.1248 24 1 -0.3633 0.6182 0.8209 25 1 -0.3632 0.4020 -0.9458 26 1 2.1372 1.6989 -1.0296 27 1 1.2774 2.0290 0.4893 28 1 3.1927 1.0175 1.7290 29 1 3.5952 2.4959 0.8459 30 1 5.3890 0.9289 0.5549 31 1 4.5272 1.0748 -0.9927 32 1 6.1774 -1.5780 3.1385 33 1 4.8153 -2.1317 -2.2340 34 1 0.9673 -1.9478 -4.0780 35 1 0.0946 -0.7004 -2.1416 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261055464.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:26 Heat of formation + Delta-G solvation = -21.192872 kcal Electronic energy + Delta-G solvation = -18881.176566 eV Core-core repulsion = 15986.087260 eV Total energy + Delta-G solvation = -2895.089306 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.75835 -41.34881 -37.51582 -36.50685 -33.76187 -32.19675 -30.67782 -28.88282 -27.27295 -25.64942 -24.91065 -22.99778 -21.31673 -20.94972 -18.53396 -17.90470 -17.43285 -17.01550 -16.48555 -16.40337 -16.02310 -15.50105 -15.10058 -14.64847 -14.42870 -14.20522 -14.02559 -13.65470 -13.43690 -13.12200 -12.91456 -12.75977 -12.52943 -12.46442 -12.06961 -11.83303 -11.66177 -11.37286 -10.93551 -10.80970 -10.41143 -9.87358 -9.65826 -8.48516 -7.97093 -5.96092 0.31810 0.47841 1.44897 1.47029 1.56588 2.53198 2.74052 3.07705 3.37008 3.44466 3.92430 4.03140 4.17305 4.27628 4.39203 4.46462 4.56561 4.62301 4.71705 4.83238 4.88587 4.98543 5.04545 5.08404 5.16184 5.28385 5.37364 5.39426 5.50813 5.76809 5.83768 5.88315 6.03137 6.06205 6.35748 6.52444 6.66509 7.19103 7.65109 9.13937 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.021183 B = 0.009172 C = 0.008005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.477048 B = 3051.977022 C = 3496.953192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.494 5.494 3 C 0.077 3.923 4 C -0.103 4.103 5 C -0.088 4.088 6 C 0.075 3.925 7 H 0.011 0.989 8 C -0.468 4.468 9 H 0.087 0.913 10 C 0.001 3.999 11 N -0.939 5.939 12 Si 0.943 3.057 13 H -0.287 1.287 14 H -0.294 1.294 15 H -0.261 1.261 16 C -0.046 4.046 17 C -0.161 4.161 18 C 0.060 3.940 19 F -0.152 7.152 20 C -0.144 4.144 21 C -0.139 4.139 22 C 0.096 3.904 23 H 0.068 0.932 24 H 0.083 0.917 25 H 0.055 0.945 26 H 0.037 0.963 27 H 0.094 0.906 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.029 0.971 31 H 0.030 0.970 32 H 0.252 0.748 33 H 0.119 0.881 34 H 0.158 0.842 35 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.250 4.632 -7.862 14.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.210 5.210 3 C -0.048 4.048 4 C -0.141 4.141 5 C -0.127 4.127 6 C 0.056 3.944 7 H 0.029 0.971 8 C -0.506 4.506 9 H 0.105 0.895 10 C -0.194 4.194 11 N -0.581 5.581 12 Si 0.770 3.230 13 H -0.214 1.214 14 H -0.221 1.221 15 H -0.185 1.185 16 C -0.048 4.048 17 C -0.181 4.181 18 C 0.040 3.960 19 F -0.131 7.131 20 C -0.163 4.163 21 C -0.160 4.160 22 C 0.000 4.000 23 H 0.087 0.913 24 H 0.102 0.898 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.113 0.887 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.137 0.863 34 H 0.176 0.824 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -10.966 4.424 -7.282 13.887 hybrid contribution 0.480 -0.448 0.277 0.713 sum -10.485 3.976 -7.005 13.222 Atomic orbital electron populations 1.22692 0.85135 1.03153 1.02014 1.59456 1.08937 1.14284 1.38297 1.21791 0.97000 0.86882 0.99148 1.20945 0.93961 0.98120 1.01057 1.21160 0.97542 0.97119 0.96855 1.18029 0.92586 0.92891 0.90914 0.97108 1.21617 0.94622 1.40834 0.93546 0.89465 1.25674 0.95124 0.96836 1.01786 1.70096 1.05077 1.52726 1.30251 0.85776 0.78941 0.77961 0.80289 1.21413 1.22065 1.18540 1.20053 0.95249 0.94791 0.94713 1.21056 1.00260 1.02748 0.94033 1.17785 0.93912 0.99009 0.85252 1.91418 1.89158 1.77833 1.54681 1.21098 0.93127 1.01203 1.00879 1.21664 1.01761 1.00952 0.91594 1.18815 0.92808 0.98686 0.89740 0.91290 0.89814 0.92720 0.94425 0.88729 0.92046 0.92389 0.95199 0.95093 0.93864 0.86300 0.82392 0.81743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 8.44 127.69 1.08 1.48 16 2 N -0.49 -16.75 2.36 -722.95 -1.71 -18.46 16 3 C 0.08 2.42 5.37 85.90 0.46 2.88 16 4 C -0.10 -3.96 5.24 29.77 0.16 -3.81 16 5 C -0.09 -3.96 5.47 30.24 0.17 -3.80 16 6 C 0.07 3.70 2.39 -11.98 -0.03 3.67 16 7 H 0.01 0.61 7.41 -2.39 -0.02 0.59 16 8 C -0.47 -24.64 5.56 25.60 0.14 -24.49 16 9 H 0.09 4.52 5.79 -2.91 -0.02 4.51 16 10 C 0.00 0.07 5.46 84.66 0.46 0.53 16 11 N -0.94 -55.61 12.97 21.45 0.28 -55.33 16 12 Si 0.94 44.34 29.54 68.60 2.03 46.36 16 13 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 14 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 15 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 16 C -0.05 -1.96 4.60 -19.75 -0.09 -2.06 16 17 C -0.16 -6.49 9.67 22.33 0.22 -6.27 16 18 C 0.06 2.08 7.30 22.40 0.16 2.25 16 19 F -0.15 -5.16 17.27 44.97 0.78 -4.38 16 20 C -0.14 -4.12 10.01 22.31 0.22 -3.90 16 21 C -0.14 -3.99 9.00 22.46 0.20 -3.79 16 22 C 0.10 3.47 4.71 37.85 0.18 3.65 16 23 H 0.07 1.68 8.13 -2.39 -0.02 1.66 16 24 H 0.08 1.78 7.86 -2.39 -0.02 1.76 16 25 H 0.05 1.04 6.35 -2.39 -0.02 1.02 16 26 H 0.04 1.13 7.76 -2.39 -0.02 1.11 16 27 H 0.09 2.38 7.56 -2.39 -0.02 2.36 16 28 H 0.06 2.75 6.53 -2.39 -0.02 2.73 16 29 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.03 1.46 8.14 -2.38 -0.02 1.44 16 31 H 0.03 1.27 7.88 -2.39 -0.02 1.25 16 32 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 33 H 0.12 4.86 7.97 -2.91 -0.02 4.84 16 34 H 0.16 3.40 8.06 -2.91 -0.02 3.37 16 35 H 0.17 3.48 5.73 -2.91 -0.02 3.46 16 Total: -1.00 -62.46 278.30 5.79 -56.67 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: 1.09 Total: 8.77 kcal Atomic # 6 Polarization: -36.97 SS G_CDS: 3.33 Total: -33.64 kcal Atomic # 7 Polarization: -72.35 SS G_CDS: -1.43 Total: -73.78 kcal Atomic # 9 Polarization: -5.16 SS G_CDS: 0.78 Total: -4.38 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -62.46 5.79 -56.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261055464.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.474 kcal (2) G-P(sol) polarization free energy of solvation -62.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds