Wall clock time and date at job start Mon Mar 30 2020 07:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46802 * 111.00405 * 2 1 4 4 C 1.51728 * 111.14742 * 35.62044 * 3 2 1 5 5 C 1.51824 * 113.89212 * 67.50734 * 4 3 2 6 6 C 1.53156 * 110.61852 * 293.16489 * 5 4 3 7 7 H 1.09001 * 109.74596 * 323.53661 * 6 5 4 8 8 C 1.50690 * 109.71511 * 202.92274 * 6 5 4 9 9 H 1.08004 * 119.99765 * 1.22952 * 8 6 5 10 10 C 1.37875 * 120.00512 * 181.21876 * 8 6 5 11 11 N 1.31516 * 120.00099 * 0.02562 * 10 8 6 12 12 Si 1.86799 * 120.00289 * 179.97438 * 10 8 6 13 13 H 1.48508 * 109.47363 * 180.02562 * 12 10 8 14 14 H 1.48503 * 109.46918 * 60.00861 * 12 10 8 15 15 H 1.48495 * 109.47378 * 300.00429 * 12 10 8 16 16 C 1.51484 * 108.23298 * 83.23685 * 6 5 4 17 17 C 1.38176 * 119.71585 * 110.52938 * 16 6 5 18 18 C 1.38554 * 119.63578 * 179.97438 * 17 16 6 19 19 F 1.35106 * 119.95300 * 180.02562 * 18 17 16 20 20 C 1.38481 * 120.09579 * 359.97438 * 18 17 16 21 21 C 1.38152 * 120.16378 * 359.97438 * 20 18 17 22 22 C 1.37748 * 119.82726 * 290.47945 * 16 6 5 23 23 H 1.09004 * 109.46998 * 326.83776 * 1 2 3 24 24 H 1.08997 * 109.47449 * 86.83356 * 1 2 3 25 25 H 1.08998 * 109.47344 * 206.83818 * 1 2 3 26 26 H 1.09000 * 109.14584 * 156.04737 * 3 2 1 27 27 H 1.08998 * 109.14662 * 275.19142 * 3 2 1 28 28 H 1.09000 * 108.59771 * 188.64878 * 4 3 2 29 29 H 1.09002 * 108.59635 * 306.51454 * 4 3 2 30 30 H 1.08995 * 109.24432 * 172.87570 * 5 4 3 31 31 H 1.09000 * 109.25733 * 53.46213 * 5 4 3 32 32 H 0.97003 * 119.99550 * 359.97438 * 11 10 8 33 33 H 1.07998 * 120.18292 * 359.94349 * 17 16 6 34 34 H 1.07997 * 119.92340 * 180.02562 * 20 18 17 35 35 H 1.08001 * 120.18522 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3705 0.0000 4 6 1.1175 2.2938 0.8242 5 6 1.1362 1.9937 2.3123 6 6 0.4881 0.6355 2.5968 7 1 -0.3523 0.4795 1.9204 8 6 0.0068 0.5909 4.0241 9 1 0.1298 1.4532 4.6626 10 6 -0.5909 -0.5506 4.5148 11 7 -0.7404 -1.6008 3.7374 12 14 -1.1869 -0.6061 6.2843 13 1 -1.7872 -1.9355 6.5631 14 1 -2.2068 0.4523 6.4964 15 1 -0.0403 -0.3793 7.2002 16 6 1.5293 -0.4422 2.3749 17 6 2.0274 -1.1461 3.4546 18 6 2.9792 -2.1319 3.2496 19 9 3.4703 -2.8244 4.3006 20 6 3.4273 -2.4090 1.9689 21 6 2.9270 -1.7046 0.8909 22 6 1.9722 -0.7147 1.0993 23 1 -0.3633 0.8603 0.5622 24 1 -0.3634 0.0568 -1.0260 25 1 -0.3634 -0.9169 0.4639 26 1 3.0018 1.3669 0.4180 27 1 2.0363 1.7376 -1.0255 28 1 1.4530 3.3197 0.6721 29 1 0.0911 2.2081 0.4672 30 1 0.5873 2.7718 2.8427 31 1 2.1680 1.9800 2.6634 32 1 -0.4306 -1.5721 2.8186 33 1 1.6770 -0.9288 4.4528 34 1 4.1690 -3.1782 1.8123 35 1 3.2759 -1.9207 -0.1081 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261055465.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:30 Heat of formation + Delta-G solvation = -11.121256 kcal Electronic energy + Delta-G solvation = -19269.169577 eV Core-core repulsion = 16374.517009 eV Total energy + Delta-G solvation = -2894.652568 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.80320 -41.88681 -38.01474 -36.47103 -33.73952 -31.99368 -30.78377 -29.40763 -27.29870 -25.55092 -24.91777 -23.16370 -21.62734 -20.72865 -19.16404 -18.29516 -17.60028 -17.21171 -16.61401 -16.46007 -15.72120 -15.63497 -15.26796 -14.97334 -14.70992 -14.22730 -13.97986 -13.76627 -13.63101 -13.00820 -12.91274 -12.74866 -12.67728 -12.45256 -12.21447 -12.01530 -11.75232 -11.38412 -11.13026 -10.59555 -10.49642 -9.63869 -9.44028 -9.17099 -8.51996 -6.30899 0.26990 0.50114 1.48807 1.54020 1.72887 2.52505 2.73264 2.99338 3.18668 3.43775 3.83292 3.99477 4.12469 4.15722 4.18747 4.39950 4.42126 4.53013 4.64202 4.67652 4.79860 4.83177 4.99151 5.02618 5.06910 5.09919 5.22095 5.24716 5.32917 5.48360 5.63289 5.75169 5.92508 6.00972 6.14509 6.22735 6.45870 6.68957 7.45611 8.81155 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.018218 B = 0.012198 C = 0.008485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.581377 B = 2294.905743 C = 3299.227963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 N -0.483 5.483 3 C 0.057 3.943 4 C -0.155 4.155 5 C -0.094 4.094 6 C 0.034 3.966 7 H 0.050 0.950 8 C -0.609 4.609 9 H 0.041 0.959 10 C -0.016 4.016 11 N -0.921 5.921 12 Si 1.095 2.905 13 H -0.287 1.287 14 H -0.269 1.269 15 H -0.278 1.278 16 C -0.062 4.062 17 C -0.126 4.126 18 C 0.055 3.945 19 F -0.156 7.156 20 C -0.159 4.159 21 C -0.078 4.078 22 C 0.048 3.952 23 H 0.070 0.930 24 H 0.089 0.911 25 H 0.034 0.966 26 H 0.064 0.936 27 H 0.107 0.893 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.037 0.963 32 H 0.264 0.736 33 H 0.114 0.886 34 H 0.159 0.841 35 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.853 3.866 -7.805 10.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 N -0.203 5.203 3 C -0.069 4.069 4 C -0.194 4.194 5 C -0.132 4.132 6 C 0.016 3.984 7 H 0.068 0.932 8 C -0.647 4.647 9 H 0.060 0.940 10 C -0.217 4.217 11 N -0.558 5.558 12 Si 0.919 3.081 13 H -0.213 1.213 14 H -0.194 1.194 15 H -0.204 1.204 16 C -0.064 4.064 17 C -0.146 4.146 18 C 0.036 3.964 19 F -0.135 7.135 20 C -0.178 4.178 21 C -0.096 4.096 22 C -0.046 4.046 23 H 0.088 0.912 24 H 0.108 0.892 25 H 0.053 0.947 26 H 0.082 0.918 27 H 0.125 0.875 28 H 0.105 0.895 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.131 0.869 34 H 0.177 0.823 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 5.284 2.665 -7.119 9.258 hybrid contribution 0.316 0.974 0.462 1.123 sum 5.600 3.639 -6.657 9.430 Atomic orbital electron populations 1.23051 0.87217 1.01733 1.02560 1.60671 1.08316 1.14064 1.37237 1.22059 0.97904 0.85716 1.01183 1.21783 1.01946 1.01193 0.94437 1.21214 0.99142 0.96681 0.96174 1.18791 0.92207 0.90339 0.97041 0.93245 1.22227 1.42740 1.01664 0.98047 0.94025 1.26765 0.94654 0.92197 1.08113 1.70891 1.44830 1.31263 1.08772 0.83201 0.76957 0.76327 0.71645 1.21299 1.19449 1.20372 1.20965 0.96412 0.97093 0.91964 1.21277 0.96025 0.95923 1.01372 1.18157 0.98333 0.95138 0.84813 1.91392 1.86795 1.78227 1.57110 1.21158 1.03599 1.03324 0.89759 1.21069 0.95626 0.93601 0.99343 1.19061 0.98667 0.98032 0.88801 0.91177 0.89223 0.94710 0.91783 0.87535 0.89456 0.90808 0.92795 0.94399 0.92466 0.86851 0.82341 0.82079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.03 7.92 127.69 1.01 1.04 16 2 N -0.48 -15.95 5.02 -722.93 -3.63 -19.58 16 3 C 0.06 1.61 5.89 85.90 0.51 2.12 16 4 C -0.16 -4.59 5.19 29.79 0.15 -4.44 16 5 C -0.09 -3.68 5.08 30.26 0.15 -3.53 16 6 C 0.03 1.60 1.49 -11.99 -0.02 1.58 16 7 H 0.05 2.42 4.09 -2.39 -0.01 2.41 16 8 C -0.61 -32.72 7.36 25.60 0.19 -32.53 16 9 H 0.04 2.25 7.66 -2.91 -0.02 2.23 16 10 C -0.02 -0.89 3.78 84.65 0.32 -0.57 16 11 N -0.92 -54.07 12.63 21.45 0.27 -53.80 16 12 Si 1.09 50.08 29.90 68.60 2.05 52.14 16 13 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 14 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 15 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 16 C -0.06 -2.82 3.25 -19.75 -0.06 -2.88 16 17 C -0.13 -6.21 7.70 22.33 0.17 -6.04 16 18 C 0.05 2.38 7.30 22.40 0.16 2.54 16 19 F -0.16 -6.78 17.27 44.97 0.78 -6.01 16 20 C -0.16 -5.63 10.01 22.31 0.22 -5.40 16 21 C -0.08 -2.64 9.98 22.46 0.22 -2.42 16 22 C 0.05 1.87 4.27 37.85 0.16 2.04 16 23 H 0.07 2.50 2.64 -2.38 -0.01 2.49 16 24 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 25 H 0.03 1.39 7.52 -2.39 -0.02 1.38 16 26 H 0.06 1.85 7.76 -2.39 -0.02 1.83 16 27 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.07 2.18 5.59 -2.39 -0.01 2.16 16 30 H 0.05 2.13 7.85 -2.39 -0.02 2.11 16 31 H 0.04 1.51 7.88 -2.39 -0.02 1.50 16 32 H 0.26 15.56 5.95 -92.71 -0.55 15.01 16 33 H 0.11 6.29 5.62 -2.91 -0.02 6.27 16 34 H 0.16 4.40 8.06 -2.91 -0.02 4.38 16 35 H 0.16 4.33 8.06 -2.91 -0.02 4.30 16 Total: -1.00 -61.69 268.48 3.99 -57.71 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: 1.32 Total: 18.04 kcal Atomic # 6 Polarization: -51.70 SS G_CDS: 3.20 Total: -48.50 kcal Atomic # 7 Polarization: -70.02 SS G_CDS: -3.36 Total: -73.38 kcal Atomic # 9 Polarization: -6.78 SS G_CDS: 0.78 Total: -6.01 kcal Atomic # 14 Polarization: 50.08 SS G_CDS: 2.05 Total: 52.14 kcal Total: -61.69 3.99 -57.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261055465.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.587 kcal (2) G-P(sol) polarization free energy of solvation -61.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds