Wall clock time and date at job start Mon Mar 30 2020 07:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.43264 * 1 3 3 C 1.46124 * 118.68699 * 2 1 4 4 C 1.52942 * 110.18625 * 297.83224 * 3 2 1 5 5 C 1.51270 * 113.13809 * 285.05311 * 4 3 2 6 6 C 1.52115 * 113.10005 * 72.30679 * 5 4 3 7 7 H 1.11147 * 107.34615 * 168.99911 * 6 5 4 8 8 C 1.50021 * 112.29383 * 51.59924 * 6 5 4 9 9 H 1.07995 * 119.99662 * 0.02562 * 8 6 5 10 10 C 1.37881 * 119.99822 * 179.97438 * 8 6 5 11 11 N 1.31506 * 120.00167 * 0.02562 * 10 8 6 12 12 Si 1.86796 * 119.99559 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47305 * 60.00280 * 12 10 8 14 14 H 1.48502 * 109.47225 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47110 * 299.99960 * 12 10 8 16 16 C 1.51080 * 111.00034 * 285.56051 * 6 5 4 17 17 C 1.39444 * 115.83330 * 237.72140 * 16 6 5 18 18 C 1.37844 * 120.71527 * 180.22502 * 17 16 6 19 19 C 1.38305 * 119.79057 * 359.97131 * 18 17 16 20 20 C 1.37843 * 119.75540 * 359.88635 * 19 18 17 21 21 F 1.35208 * 120.24543 * 180.18341 * 20 19 18 22 22 C 1.36795 * 124.43271 * 57.81991 * 16 6 5 23 23 H 1.09003 * 109.47403 * 199.25801 * 1 2 3 24 24 H 1.09001 * 109.47188 * 319.25439 * 1 2 3 25 25 H 1.08997 * 109.47500 * 79.25310 * 1 2 3 26 26 H 1.08819 * 109.85722 * 57.37052 * 3 2 1 27 27 H 1.08791 * 109.91892 * 178.18981 * 3 2 1 28 28 H 1.07858 * 110.05464 * 49.93524 * 4 3 2 29 29 H 1.09776 * 106.77676 * 166.50076 * 4 3 2 30 30 H 1.09586 * 108.79958 * 193.77131 * 5 4 3 31 31 H 1.09548 * 108.84091 * 310.75451 * 5 4 3 32 32 H 0.97003 * 120.00398 * 180.02562 * 11 10 8 33 33 H 1.08092 * 118.99034 * 0.26639 * 17 16 6 34 34 H 1.08014 * 120.31030 * 180.24014 * 18 17 16 35 35 H 1.08003 * 119.94275 * 179.90505 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4326 0.0000 0.0000 3 6 2.1341 1.2819 0.0000 4 6 1.7995 2.0666 -1.2694 5 6 2.4977 1.5318 -2.5002 6 6 1.9277 0.2059 -2.9810 7 1 2.3611 0.0032 -3.9842 8 6 0.4375 0.2538 -3.1468 9 1 -0.1010 1.1644 -2.9299 10 6 -0.2445 -0.8646 -3.5773 11 7 0.4114 -1.9733 -3.8420 12 14 -2.0999 -0.8047 -3.7845 13 1 -2.4533 0.2370 -4.7821 14 1 -2.5885 -2.1262 -4.2540 15 1 -2.7332 -0.4777 -2.4818 16 6 2.3571 -0.9270 -2.0785 17 6 3.0488 -1.9679 -2.6970 18 6 3.4836 -3.0547 -1.9691 19 6 3.2332 -3.1164 -0.6103 20 6 2.5524 -2.0891 0.0072 21 9 2.3054 -2.1375 1.3356 22 6 2.1085 -0.9820 -0.7344 23 1 -0.3634 -0.9702 0.3390 24 1 -0.3633 0.7786 0.6708 25 1 -0.3634 0.1916 -1.0096 26 1 1.8274 1.8711 0.8620 27 1 3.2088 1.1163 0.0323 28 1 0.7310 2.0990 -1.4134 29 1 2.1447 3.0957 -1.1060 30 1 2.4132 2.2720 -3.3038 31 1 3.5626 1.4061 -2.2762 32 1 -0.0683 -2.7600 -4.1453 33 1 3.2411 -1.9107 -3.7591 34 1 4.0223 -3.8555 -2.4542 35 1 3.5714 -3.9676 -0.0379 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261060287.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:37 Heat of formation + Delta-G solvation = -17.317014 kcal Electronic energy + Delta-G solvation = -19407.049743 eV Core-core repulsion = 16512.128507 eV Total energy + Delta-G solvation = -2894.921236 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -47.82696 -39.22432 -36.16296 -34.21814 -32.16414 -30.43321 -28.83630 -27.82494 -25.31466 -24.10038 -23.22291 -21.31432 -19.49983 -19.18519 -16.91595 -16.13777 -15.83430 -15.05032 -14.89140 -14.60098 -14.11504 -13.91518 -13.49356 -13.12660 -12.81338 -12.53377 -12.11551 -12.01571 -11.57867 -11.30556 -11.17602 -11.04931 -10.83176 -10.74296 -10.53818 -10.39057 -10.24091 -9.67665 -9.46776 -9.00392 -8.48576 -7.69554 -7.51540 -7.08605 -6.05942 -4.14593 2.23565 2.34784 3.24899 3.30924 3.32743 4.34427 4.52079 4.70684 5.19014 5.28308 5.56919 5.66279 5.75811 5.84050 6.00169 6.08708 6.22186 6.28703 6.36596 6.38955 6.49959 6.58567 6.72092 6.77771 6.91518 7.00598 7.05126 7.13992 7.17853 7.29946 7.48995 7.74309 7.77499 7.92718 8.17105 8.29357 8.54594 8.85235 9.47183 10.95357 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.018963 B = 0.011905 C = 0.010297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.175559 B = 2351.369148 C = 2718.618965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.576 5.576 3 C 0.108 3.892 4 C -0.144 4.144 5 C -0.098 4.098 6 C 0.078 3.922 7 H 0.028 0.972 8 C -0.507 4.507 9 H 0.060 0.940 10 C 0.069 3.931 11 N -0.872 5.872 12 Si 0.884 3.116 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.275 1.275 16 C 0.002 3.998 17 C -0.078 4.078 18 C -0.116 4.116 19 C -0.183 4.183 20 C 0.085 3.915 21 F -0.148 7.148 22 C 0.094 3.906 23 H 0.046 0.954 24 H 0.048 0.952 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.037 0.963 30 H 0.049 0.951 31 H 0.035 0.965 32 H 0.262 0.738 33 H 0.116 0.884 34 H 0.113 0.887 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.162 2.081 4.328 6.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.298 5.298 3 C -0.018 4.018 4 C -0.183 4.183 5 C -0.135 4.135 6 C 0.060 3.940 7 H 0.046 0.954 8 C -0.544 4.544 9 H 0.078 0.922 10 C -0.135 4.135 11 N -0.509 5.509 12 Si 0.712 3.288 13 H -0.203 1.203 14 H -0.213 1.213 15 H -0.201 1.201 16 C 0.000 4.000 17 C -0.098 4.098 18 C -0.134 4.134 19 C -0.203 4.203 20 C 0.065 3.935 21 F -0.127 7.127 22 C 0.000 4.000 23 H 0.065 0.935 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.134 0.866 34 H 0.131 0.869 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.116 1.818 4.625 6.452 hybrid contribution -1.357 -0.120 -0.549 1.468 sum 2.759 1.697 4.076 5.206 Atomic orbital electron populations 1.21269 0.83461 1.00072 1.02270 1.51396 1.05638 1.08912 1.63815 1.21454 0.97174 0.87100 0.96077 1.21754 1.02343 0.97962 0.96273 1.21089 0.97483 0.98527 0.96423 1.17879 0.96306 0.87107 0.92729 0.95438 1.20656 0.90862 0.97613 1.45303 0.92227 1.24938 0.98019 0.95525 0.95033 1.69926 1.35400 1.01642 1.43896 0.86780 0.86082 0.77255 0.78692 1.20271 1.21285 1.20052 1.20518 0.90467 0.97512 0.91516 1.21199 0.96407 0.93068 0.99079 1.20657 1.01341 0.98460 0.92981 1.20595 1.04914 0.98794 0.95969 1.18228 1.01483 0.96567 0.77244 1.91400 1.92838 1.96639 1.31773 1.17542 1.00664 0.91662 0.90092 0.93545 0.93303 0.91859 0.92125 0.91940 0.90932 0.94424 0.93273 0.94585 0.92778 0.86612 0.86928 0.86674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.53 9.46 58.14 0.55 2.08 16 2 N -0.58 -11.91 3.07 -182.85 -0.56 -12.47 16 3 C 0.11 1.94 5.77 -4.27 -0.02 1.92 16 4 C -0.14 -2.61 5.13 -27.63 -0.14 -2.75 16 5 C -0.10 -1.92 5.05 -28.05 -0.14 -2.07 16 6 C 0.08 1.81 1.90 -93.52 -0.18 1.63 16 7 H 0.03 0.69 7.53 -50.69 -0.38 0.31 16 8 C -0.51 -12.68 5.62 -34.77 -0.20 -12.87 16 9 H 0.06 1.49 6.46 -52.49 -0.34 1.15 16 10 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 11 N -0.87 -23.28 11.14 55.43 0.62 -22.67 16 12 Si 0.88 20.47 29.54 -169.99 -5.02 15.44 16 13 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 14 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 16 C 0.00 0.06 3.77 -104.51 -0.39 -0.34 16 17 C -0.08 -1.70 8.18 -39.28 -0.32 -2.02 16 18 C -0.12 -2.25 10.05 -39.70 -0.40 -2.64 16 19 C -0.18 -3.57 10.02 -39.70 -0.40 -3.97 16 20 C 0.09 1.83 7.30 -38.89 -0.28 1.55 16 21 F -0.15 -3.13 16.85 2.25 0.04 -3.09 16 22 C 0.09 2.10 4.69 -83.81 -0.39 1.71 16 23 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.05 0.86 8.10 -51.93 -0.42 0.44 16 25 H 0.06 1.44 4.88 -51.93 -0.25 1.19 16 26 H 0.06 0.96 8.13 -52.03 -0.42 0.54 16 27 H 0.06 1.11 7.81 -52.05 -0.41 0.70 16 28 H 0.07 1.43 5.52 -52.56 -0.29 1.14 16 29 H 0.04 0.59 8.20 -51.49 -0.42 0.16 16 30 H 0.05 0.93 8.19 -51.60 -0.42 0.51 16 31 H 0.04 0.67 8.06 -51.62 -0.42 0.25 16 32 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 33 H 0.12 2.52 7.58 -52.44 -0.40 2.12 16 34 H 0.11 1.84 8.06 -52.48 -0.42 1.42 16 35 H 0.12 1.93 8.06 -52.48 -0.42 1.51 16 LS Contribution 277.17 15.07 4.18 4.18 Total: -1.00 -26.65 277.17 -7.74 -34.39 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -4.58 Total: 0.31 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: -2.41 Total: -16.10 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: 0.06 Total: -35.14 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.04 Total: -3.09 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -26.65 -7.74 -34.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261060287.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.070 kcal (2) G-P(sol) polarization free energy of solvation -26.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds