Wall clock time and date at job start Mon Mar 30 2020 07:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.43264 * 1 3 3 C 1.46124 * 118.68699 * 2 1 4 4 C 1.52942 * 110.18625 * 297.83224 * 3 2 1 5 5 C 1.51270 * 113.13809 * 285.05311 * 4 3 2 6 6 C 1.52115 * 113.10005 * 72.30679 * 5 4 3 7 7 H 1.11147 * 107.34615 * 168.99911 * 6 5 4 8 8 C 1.50021 * 112.29383 * 51.59924 * 6 5 4 9 9 H 1.07995 * 119.99662 * 0.02562 * 8 6 5 10 10 C 1.37881 * 119.99822 * 179.97438 * 8 6 5 11 11 N 1.31506 * 120.00167 * 0.02562 * 10 8 6 12 12 Si 1.86796 * 119.99559 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47305 * 60.00280 * 12 10 8 14 14 H 1.48502 * 109.47225 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47110 * 299.99960 * 12 10 8 16 16 C 1.51080 * 111.00034 * 285.56051 * 6 5 4 17 17 C 1.39444 * 115.83330 * 237.72140 * 16 6 5 18 18 C 1.37844 * 120.71527 * 180.22502 * 17 16 6 19 19 C 1.38305 * 119.79057 * 359.97131 * 18 17 16 20 20 C 1.37843 * 119.75540 * 359.88635 * 19 18 17 21 21 F 1.35208 * 120.24543 * 180.18341 * 20 19 18 22 22 C 1.36795 * 124.43271 * 57.81991 * 16 6 5 23 23 H 1.09003 * 109.47403 * 199.25801 * 1 2 3 24 24 H 1.09001 * 109.47188 * 319.25439 * 1 2 3 25 25 H 1.08997 * 109.47500 * 79.25310 * 1 2 3 26 26 H 1.08819 * 109.85722 * 57.37052 * 3 2 1 27 27 H 1.08791 * 109.91892 * 178.18981 * 3 2 1 28 28 H 1.07858 * 110.05464 * 49.93524 * 4 3 2 29 29 H 1.09776 * 106.77676 * 166.50076 * 4 3 2 30 30 H 1.09586 * 108.79958 * 193.77131 * 5 4 3 31 31 H 1.09548 * 108.84091 * 310.75451 * 5 4 3 32 32 H 0.97003 * 120.00398 * 180.02562 * 11 10 8 33 33 H 1.08092 * 118.99034 * 0.26639 * 17 16 6 34 34 H 1.08014 * 120.31030 * 180.24014 * 18 17 16 35 35 H 1.08003 * 119.94275 * 179.90505 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4326 0.0000 0.0000 3 6 2.1341 1.2819 0.0000 4 6 1.7995 2.0666 -1.2694 5 6 2.4977 1.5318 -2.5002 6 6 1.9277 0.2059 -2.9810 7 1 2.3611 0.0032 -3.9842 8 6 0.4375 0.2538 -3.1468 9 1 -0.1010 1.1644 -2.9299 10 6 -0.2445 -0.8646 -3.5773 11 7 0.4114 -1.9733 -3.8420 12 14 -2.0999 -0.8047 -3.7845 13 1 -2.4533 0.2370 -4.7821 14 1 -2.5885 -2.1262 -4.2540 15 1 -2.7332 -0.4777 -2.4818 16 6 2.3571 -0.9270 -2.0785 17 6 3.0488 -1.9679 -2.6970 18 6 3.4836 -3.0547 -1.9691 19 6 3.2332 -3.1164 -0.6103 20 6 2.5524 -2.0891 0.0072 21 9 2.3054 -2.1375 1.3356 22 6 2.1085 -0.9820 -0.7344 23 1 -0.3634 -0.9702 0.3390 24 1 -0.3633 0.7786 0.6708 25 1 -0.3634 0.1916 -1.0096 26 1 1.8274 1.8711 0.8620 27 1 3.2088 1.1163 0.0323 28 1 0.7310 2.0990 -1.4134 29 1 2.1447 3.0957 -1.1060 30 1 2.4132 2.2720 -3.3038 31 1 3.5626 1.4061 -2.2762 32 1 -0.0683 -2.7600 -4.1453 33 1 3.2411 -1.9107 -3.7591 34 1 4.0223 -3.8555 -2.4542 35 1 3.5714 -3.9676 -0.0379 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261060287.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:37 Heat of formation + Delta-G solvation = -29.835596 kcal Electronic energy + Delta-G solvation = -19407.592590 eV Core-core repulsion = 16512.128507 eV Total energy + Delta-G solvation = -2895.464083 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.46438 -40.83822 -37.71932 -35.96036 -33.94298 -32.07308 -30.45273 -29.49099 -27.06976 -25.72347 -24.88184 -22.95180 -21.03497 -20.89373 -18.67591 -17.81543 -17.44935 -16.73081 -16.62673 -16.35975 -15.71433 -15.43492 -15.09979 -14.72387 -14.57732 -14.24482 -13.72150 -13.63454 -13.19642 -12.93575 -12.84594 -12.79225 -12.54762 -12.49328 -12.20462 -11.99699 -11.85819 -11.30449 -11.16870 -10.77447 -10.43851 -9.32239 -9.18492 -8.68451 -8.01032 -6.14118 0.58978 0.73300 1.39388 1.41877 1.45997 2.42694 2.94851 3.09418 3.24192 3.65306 4.09549 4.16728 4.26698 4.34153 4.43623 4.58380 4.65266 4.74566 4.83531 4.89611 4.93874 5.00149 5.16192 5.21124 5.32620 5.35556 5.44565 5.49186 5.54607 5.62552 5.78481 5.84754 6.10935 6.22931 6.38877 6.65798 6.86630 6.95777 7.48634 8.96895 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.018963 B = 0.011905 C = 0.010297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.175559 B = 2351.369148 C = 2718.618965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.581 5.581 3 C 0.106 3.894 4 C -0.140 4.140 5 C -0.097 4.097 6 C 0.078 3.922 7 H -0.004 1.004 8 C -0.504 4.504 9 H 0.055 0.945 10 C 0.028 3.972 11 N -0.893 5.893 12 Si 0.930 3.070 13 H -0.274 1.274 14 H -0.292 1.292 15 H -0.272 1.272 16 C -0.015 4.015 17 C -0.095 4.095 18 C -0.110 4.110 19 C -0.175 4.175 20 C 0.068 3.932 21 F -0.148 7.148 22 C 0.080 3.920 23 H 0.033 0.967 24 H 0.078 0.922 25 H 0.037 0.963 26 H 0.088 0.912 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.045 0.955 32 H 0.257 0.743 33 H 0.104 0.896 34 H 0.146 0.854 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.505 2.357 5.546 7.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.302 5.302 3 C -0.019 4.019 4 C -0.179 4.179 5 C -0.134 4.134 6 C 0.059 3.941 7 H 0.014 0.986 8 C -0.542 4.542 9 H 0.073 0.927 10 C -0.173 4.173 11 N -0.531 5.531 12 Si 0.757 3.243 13 H -0.199 1.199 14 H -0.218 1.218 15 H -0.197 1.197 16 C -0.018 4.018 17 C -0.114 4.114 18 C -0.128 4.128 19 C -0.195 4.195 20 C 0.047 3.953 21 F -0.127 7.127 22 C -0.014 4.014 23 H 0.052 0.948 24 H 0.096 0.904 25 H 0.055 0.945 26 H 0.106 0.894 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.122 0.878 34 H 0.164 0.836 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 4.462 2.115 5.845 7.652 hybrid contribution -1.413 -0.204 -0.932 1.705 sum 3.049 1.911 4.913 6.090 Atomic orbital electron populations 1.21187 0.83697 1.00366 1.01333 1.51562 1.05541 1.09871 1.63263 1.21603 0.97160 0.86213 0.96939 1.21655 1.01071 0.99682 0.95469 1.21054 0.98066 0.96863 0.97463 1.17841 0.95200 0.89356 0.91675 0.98619 1.20840 0.91971 0.97150 1.44225 0.92652 1.25487 1.00916 0.95550 0.95350 1.70051 1.36115 1.01846 1.45087 0.86044 0.82745 0.76868 0.78625 1.19914 1.21764 1.19705 1.20473 0.91679 0.97723 0.91935 1.21259 0.97314 0.94025 0.98819 1.20980 1.00471 0.98288 0.93016 1.20953 1.03429 0.98982 0.96097 1.18456 1.02299 0.97108 0.77396 1.91392 1.92939 1.96665 1.31688 1.17724 1.00981 0.92599 0.90086 0.94802 0.90365 0.94461 0.89425 0.91718 0.92581 0.91267 0.93006 0.93612 0.93414 0.87778 0.83630 0.83512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 3.18 9.46 128.36 1.21 4.40 16 2 N -0.58 -23.21 3.07 -732.42 -2.25 -25.45 16 3 C 0.11 3.57 5.77 86.43 0.50 4.07 16 4 C -0.14 -4.79 5.13 30.01 0.15 -4.64 16 5 C -0.10 -3.75 5.05 29.74 0.15 -3.60 16 6 C 0.08 3.65 1.90 -12.67 -0.02 3.62 16 7 H 0.00 -0.22 7.53 -1.22 -0.01 -0.23 16 8 C -0.50 -25.49 5.62 25.39 0.14 -25.34 16 9 H 0.06 2.79 6.46 -2.91 -0.02 2.77 16 10 C 0.03 1.47 5.29 84.66 0.45 1.92 16 11 N -0.89 -48.48 11.14 21.45 0.24 -48.24 16 12 Si 0.93 42.26 29.54 68.60 2.03 44.29 16 13 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 14 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 15 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 16 C -0.02 -0.71 3.77 -19.79 -0.07 -0.78 16 17 C -0.09 -4.12 8.18 22.47 0.18 -3.93 16 18 C -0.11 -4.05 10.05 22.19 0.22 -3.82 16 19 C -0.18 -6.42 10.02 22.19 0.22 -6.20 16 20 C 0.07 2.81 7.30 22.72 0.17 2.98 16 21 F -0.15 -6.02 16.85 44.97 0.76 -5.26 16 22 C 0.08 3.51 4.69 38.03 0.18 3.69 16 23 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.08 2.59 8.10 -2.39 -0.02 2.57 16 25 H 0.04 1.68 4.88 -2.39 -0.01 1.67 16 26 H 0.09 2.48 8.13 -2.48 -0.02 2.45 16 27 H 0.06 2.15 7.81 -2.50 -0.02 2.13 16 28 H 0.06 2.12 5.52 -2.98 -0.02 2.11 16 29 H 0.07 1.95 8.20 -1.97 -0.02 1.93 16 30 H 0.05 1.93 8.19 -2.08 -0.02 1.91 16 31 H 0.05 1.65 8.06 -2.10 -0.02 1.64 16 32 H 0.26 13.71 8.31 -92.71 -0.77 12.94 16 33 H 0.10 4.66 7.58 -2.86 -0.02 4.64 16 34 H 0.15 4.34 8.06 -2.90 -0.02 4.32 16 35 H 0.15 4.39 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -56.61 277.17 5.36 -51.25 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 1.10 Total: 11.07 kcal Atomic # 6 Polarization: -31.13 SS G_CDS: 3.48 Total: -27.65 kcal Atomic # 7 Polarization: -71.69 SS G_CDS: -2.01 Total: -73.70 kcal Atomic # 9 Polarization: -6.02 SS G_CDS: 0.76 Total: -5.26 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -56.61 5.36 -51.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261060287.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.419 kcal (2) G-P(sol) polarization free energy of solvation -56.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds