Wall clock time and date at job start Mon Mar 30 2020 06:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47547 * 2 1 4 4 C 1.50703 * 109.46956 * 240.00315 * 2 1 3 5 5 H 1.07995 * 120.00498 * 240.00005 * 4 2 1 6 6 C 1.37883 * 119.99899 * 60.00383 * 4 2 1 7 7 N 1.31515 * 119.99690 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00172 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47395 * 59.99056 * 8 6 4 10 10 H 1.48493 * 109.47160 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.46587 * 299.99696 * 8 6 4 12 12 C 1.52999 * 109.47461 * 120.00744 * 2 1 3 13 13 H 1.09006 * 110.69129 * 50.98489 * 12 2 1 14 14 C 1.54592 * 110.78338 * 174.28256 * 12 2 1 15 15 C 1.51579 * 102.85665 * 143.84471 * 14 12 2 16 16 C 1.37993 * 131.53930 * 163.74517 * 15 14 12 17 17 C 1.38268 * 120.12633 * 180.41159 * 16 15 14 18 18 C 1.38331 * 119.89509 * 0.04842 * 17 16 15 19 19 C 1.38059 * 120.23232 * 0.13196 * 18 17 16 20 20 F 1.35106 * 119.91755 * 179.68604 * 19 18 17 21 21 C 1.38863 * 107.96689 * 343.96916 * 15 14 12 22 22 N 1.40209 * 110.96256 * 359.32881 * 21 15 14 23 23 C 1.46897 * 110.99864 * 256.50630 * 22 21 15 24 24 H 1.09002 * 109.47040 * 304.74343 * 1 2 3 25 25 H 1.09004 * 109.47275 * 64.73478 * 1 2 3 26 26 H 1.08997 * 109.47504 * 184.74362 * 1 2 3 27 27 H 0.97003 * 119.99642 * 180.02562 * 7 6 4 28 28 H 1.09003 * 110.73587 * 25.50914 * 14 12 2 29 29 H 1.08997 * 110.74239 * 262.18920 * 14 12 2 30 30 H 1.07999 * 119.93997 * 0.39130 * 16 15 14 31 31 H 1.07997 * 120.04972 * 180.02562 * 17 16 15 32 32 H 1.08005 * 119.87684 * 179.84843 * 18 17 16 33 33 H 1.09005 * 109.46746 * 185.14416 * 23 22 21 34 34 H 1.09003 * 109.47449 * 305.14577 * 23 22 21 35 35 H 1.09004 * 109.47539 * 65.14928 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5884 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 0.9428 0.8299 -2.6033 8 14 2.3212 -1.1200 -4.0081 9 1 1.8258 -2.5199 -4.0080 10 1 1.8268 -0.4194 -5.2205 11 1 3.8063 -1.1206 -4.0083 12 6 2.0401 -0.7214 1.2491 13 1 1.5632 -1.6962 1.3526 14 6 3.5788 -0.8649 1.2098 15 6 3.9711 -0.6902 2.6634 16 6 5.1362 -0.9903 3.3392 17 6 5.2381 -0.7345 4.6942 18 6 4.1692 -0.1776 5.3730 19 6 2.9997 0.1212 4.7028 20 9 1.9574 0.6591 5.3734 21 6 2.8931 -0.1269 3.3333 22 7 1.8232 0.1042 2.4571 23 6 1.7246 1.5283 2.1107 24 1 -0.3633 0.5857 0.8445 25 1 -0.3634 0.4386 -0.9294 26 1 -0.3634 -1.0241 0.0850 27 1 0.7081 1.1612 -3.4843 28 1 4.0236 -0.0836 0.5935 29 1 3.8652 -1.8527 0.8487 30 1 5.9700 -1.4261 2.8089 31 1 6.1507 -0.9695 5.2218 32 1 4.2482 0.0198 6.4319 33 1 0.8340 1.6939 1.5044 34 1 1.6581 2.1205 3.0234 35 1 2.6085 1.8273 1.5472 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261072471.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:13 Heat of formation + Delta-G solvation = -20.660181 kcal Electronic energy + Delta-G solvation = -18449.490366 eV Core-core repulsion = 15554.424160 eV Total energy + Delta-G solvation = -2895.066207 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.77867 -41.84208 -38.36032 -35.66504 -33.07586 -32.75293 -30.50460 -29.15504 -27.11152 -26.82458 -24.31549 -22.61659 -22.34012 -20.74659 -18.56798 -18.05975 -17.45416 -17.21843 -16.73294 -16.53042 -15.95833 -15.58091 -15.37820 -14.71128 -14.31701 -14.09049 -14.01101 -13.68340 -13.38259 -13.15622 -12.96985 -12.76738 -12.67728 -12.35813 -12.24872 -12.15052 -11.99513 -11.79990 -11.19803 -10.82809 -10.44232 -10.31964 -9.63033 -8.87081 -8.07283 -6.20198 0.21139 0.23420 1.44340 1.45235 1.52215 2.42619 2.57930 2.74487 3.21178 3.36280 3.65426 3.91076 4.05440 4.10302 4.28393 4.32765 4.43502 4.53758 4.59059 4.72578 4.85740 4.89720 5.02062 5.04644 5.12656 5.15364 5.30410 5.35137 5.40384 5.49767 5.61647 5.74171 5.85877 5.92756 6.12741 6.30602 6.38688 6.89140 7.47489 8.97527 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.034431 B = 0.006471 C = 0.005660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.018340 B = 4325.867293 C = 4945.398730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.046 3.954 3 H 0.018 0.982 4 C -0.523 4.523 5 H 0.060 0.940 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.952 3.048 9 H -0.273 1.273 10 H -0.289 1.289 11 H -0.270 1.270 12 C 0.094 3.906 13 H 0.074 0.926 14 C -0.087 4.087 15 C -0.124 4.124 16 C -0.101 4.101 17 C -0.094 4.094 18 C -0.138 4.138 19 C 0.077 3.923 20 F -0.151 7.151 21 C 0.031 3.969 22 N -0.501 5.501 23 C 0.037 3.963 24 H 0.028 0.972 25 H 0.057 0.943 26 H 0.022 0.978 27 H 0.260 0.740 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.151 0.849 31 H 0.176 0.824 32 H 0.166 0.834 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.874 -2.318 12.917 15.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.027 3.973 3 H 0.036 0.964 4 C -0.562 4.562 5 H 0.079 0.921 6 C -0.184 4.184 7 N -0.557 5.557 8 Si 0.778 3.222 9 H -0.198 1.198 10 H -0.214 1.214 11 H -0.195 1.195 12 C -0.012 4.012 13 H 0.092 0.908 14 C -0.125 4.125 15 C -0.126 4.126 16 C -0.120 4.120 17 C -0.112 4.112 18 C -0.157 4.157 19 C 0.056 3.944 20 F -0.129 7.129 21 C -0.066 4.066 22 N -0.218 5.218 23 C -0.108 4.108 24 H 0.047 0.953 25 H 0.076 0.924 26 H 0.041 0.959 27 H 0.069 0.931 28 H 0.092 0.908 29 H 0.108 0.892 30 H 0.168 0.832 31 H 0.194 0.806 32 H 0.183 0.817 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 8.203 -2.283 13.008 15.547 hybrid contribution 0.131 0.098 -1.453 1.462 sum 8.335 -2.185 11.555 14.414 Atomic orbital electron populations 1.21711 0.98449 0.98343 1.00052 1.18859 0.92966 0.95114 0.90326 0.96421 1.21391 1.31077 1.12562 0.91154 0.92149 1.25675 0.95317 0.95664 1.01763 1.70009 1.37605 1.24180 1.23901 0.85708 0.78866 0.78738 0.78923 1.19782 1.21428 1.19504 1.22741 0.94079 0.96159 0.88260 0.90824 1.21542 0.96271 1.03128 0.91539 1.21312 0.94081 1.01242 0.95991 1.20877 0.96310 0.99742 0.95022 1.21342 0.99213 0.97390 0.93230 1.21270 0.90987 1.01429 1.02014 1.17614 0.86715 1.02780 0.87323 1.91431 1.57253 1.84170 1.80088 1.19973 0.91815 1.02232 0.92619 1.60298 1.40186 1.07973 1.13335 1.22411 1.01526 0.86517 1.00369 0.95305 0.92379 0.95876 0.93111 0.90834 0.89217 0.83159 0.80624 0.81678 0.90478 0.91455 0.95616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.29 8.63 71.98 0.62 -5.67 16 2 C 0.05 2.25 1.29 -11.54 -0.01 2.23 16 3 H 0.02 0.94 5.70 -2.39 -0.01 0.93 16 4 C -0.52 -27.43 7.90 25.60 0.20 -27.22 16 5 H 0.06 3.05 7.18 -2.91 -0.02 3.03 16 6 C 0.01 0.77 5.29 84.66 0.45 1.22 16 7 N -0.92 -51.94 11.29 21.45 0.24 -51.70 16 8 Si 0.95 42.43 29.54 68.60 2.03 44.46 16 9 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 10 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 11 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 12 C 0.09 3.98 2.84 45.26 0.13 4.11 16 13 H 0.07 3.22 8.14 -2.38 -0.02 3.20 16 14 C -0.09 -3.23 5.36 30.67 0.16 -3.07 16 15 C -0.12 -4.02 6.23 -19.49 -0.12 -4.14 16 16 C -0.10 -2.41 10.03 22.22 0.22 -2.19 16 17 C -0.09 -1.77 10.06 22.30 0.22 -1.55 16 18 C -0.14 -3.08 10.00 22.25 0.22 -2.85 16 19 C 0.08 2.38 7.32 22.55 0.17 2.55 16 20 F -0.15 -5.01 17.27 44.97 0.78 -4.23 16 21 C 0.03 1.10 5.56 38.28 0.21 1.31 16 22 N -0.50 -20.07 5.28 -689.41 -3.64 -23.71 16 23 C 0.04 1.45 8.01 127.69 1.02 2.48 16 24 H 0.03 1.30 6.30 -2.39 -0.02 1.28 16 25 H 0.06 3.15 5.96 -2.38 -0.01 3.14 16 26 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 28 H 0.07 2.96 7.83 -2.39 -0.02 2.94 16 29 H 0.09 3.12 8.06 -2.39 -0.02 3.10 16 30 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 31 H 0.18 1.79 8.06 -2.91 -0.02 1.77 16 32 H 0.17 2.60 8.06 -2.91 -0.02 2.58 16 33 H 0.08 3.18 5.03 -2.38 -0.01 3.17 16 34 H 0.07 2.37 8.12 -2.39 -0.02 2.35 16 35 H 0.03 1.03 7.31 -2.39 -0.02 1.01 16 Total: -1.00 -60.49 283.48 3.99 -56.50 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: 1.09 Total: 11.47 kcal Atomic # 6 Polarization: -36.28 SS G_CDS: 3.50 Total: -32.79 kcal Atomic # 7 Polarization: -72.01 SS G_CDS: -3.40 Total: -75.41 kcal Atomic # 9 Polarization: -5.01 SS G_CDS: 0.78 Total: -4.23 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -60.49 3.99 -56.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261072471.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.835 kcal (2) G-P(sol) polarization free energy of solvation -60.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds