Wall clock time and date at job start Mon Mar 30 2020 06:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 H 1.08997 * 109.46987 * 2 1 4 4 C 1.50704 * 109.46922 * 119.99489 * 2 1 3 5 5 H 1.08000 * 119.99279 * 114.62836 * 4 2 1 6 6 C 1.37869 * 120.00270 * 294.63057 * 4 2 1 7 7 N 1.31510 * 120.00085 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99864 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47390 * 89.99827 * 8 6 4 10 10 H 1.48501 * 109.46758 * 209.99815 * 8 6 4 11 11 H 1.48495 * 109.46951 * 329.99522 * 8 6 4 12 12 C 1.52995 * 109.47060 * 239.99975 * 2 1 3 13 13 H 1.08998 * 110.84195 * 63.51177 * 12 2 1 14 14 C 1.54601 * 110.77910 * 300.10686 * 12 2 1 15 15 C 1.51579 * 102.87163 * 216.22338 * 14 12 2 16 16 C 1.37999 * 131.52815 * 196.12197 * 15 14 12 17 17 C 1.38263 * 120.12138 * 179.08249 * 16 15 14 18 18 C 1.38335 * 119.90059 * 0.27090 * 17 16 15 19 19 C 1.38067 * 120.23207 * 0.11740 * 18 17 16 20 20 F 1.35093 * 119.91828 * 180.02562 * 19 18 17 21 21 C 1.38865 * 107.98276 * 15.99573 * 15 14 12 22 22 N 1.40218 * 110.94556 * 1.12139 * 21 15 14 23 23 C 1.46903 * 110.99522 * 219.83864 * 22 21 15 24 24 H 1.08994 * 109.47098 * 299.99778 * 1 2 3 25 25 H 1.08996 * 109.47046 * 60.00473 * 1 2 3 26 26 H 1.09004 * 109.46466 * 180.02562 * 1 2 3 27 27 H 0.97006 * 120.00085 * 179.97438 * 7 6 4 28 28 H 1.08998 * 110.73341 * 97.88106 * 14 12 2 29 29 H 1.08996 * 110.88958 * 334.64199 * 14 12 2 30 30 H 1.08000 * 119.93755 * 359.35681 * 16 15 14 31 31 H 1.07996 * 120.05145 * 180.29579 * 17 16 15 32 32 H 1.08003 * 119.88352 * 180.13258 * 18 17 16 33 33 H 1.08999 * 109.47165 * 53.68765 * 23 22 21 34 34 H 1.09004 * 109.46575 * 173.68309 * 23 22 21 35 35 H 1.08993 * 109.47498 * 293.68033 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 1.2306 5 1 2.5799 -1.6363 1.1338 6 6 1.7930 -0.1782 2.4797 7 7 1.1268 0.9495 2.5974 8 14 2.4163 -1.0584 4.0050 9 1 3.7811 -0.5739 4.3332 10 1 1.5050 -0.7803 5.1440 11 1 2.4582 -2.5208 3.7501 12 6 2.0401 -0.7212 -1.2492 13 1 1.7410 -0.1902 -2.1529 14 6 1.5393 -2.1835 -1.2811 15 6 2.7137 -2.9296 -1.8827 16 6 2.8095 -4.1887 -2.4394 17 6 4.0175 -4.6344 -2.9433 18 6 5.1328 -3.8182 -2.8838 19 6 5.0447 -2.5606 -2.3207 20 9 6.1378 -1.7686 -2.2664 21 6 3.8288 -2.1055 -1.8080 22 7 3.5118 -0.8880 -1.1889 23 6 4.1869 0.2333 -1.8560 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 0.9581 1.3237 3.4764 28 1 0.6578 -2.2758 -1.9155 29 1 1.3280 -2.5440 -0.2744 30 1 1.9384 -4.8253 -2.4855 31 1 4.0901 -5.6181 -3.3830 32 1 6.0757 -4.1658 -3.2794 33 1 3.9598 0.2118 -2.9219 34 1 3.8377 1.1735 -1.4290 35 1 5.2638 0.1466 -1.7121 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261072472.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:18 Heat of formation + Delta-G solvation = -11.138715 kcal Electronic energy + Delta-G solvation = -18586.354374 eV Core-core repulsion = 15691.701049 eV Total energy + Delta-G solvation = -2894.653325 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.50501 -40.24548 -36.78472 -33.95992 -31.97153 -30.74695 -29.35484 -27.36226 -25.25981 -24.88234 -23.05987 -21.30599 -21.01005 -19.16496 -16.84340 -16.50263 -16.05154 -15.61871 -15.38652 -14.72948 -14.42917 -14.31545 -13.66227 -13.13754 -12.88928 -12.68642 -12.49562 -12.12448 -11.80550 -11.51690 -11.28949 -11.08086 -10.94151 -10.83189 -10.80958 -10.54211 -10.19074 -9.93045 -9.79325 -9.14349 -8.77320 -8.38571 -8.26813 -7.18878 -5.92360 -3.92560 1.46231 1.54499 3.36992 3.43311 3.47552 3.81616 4.14494 4.52229 4.65627 4.91969 5.05711 5.30779 5.38172 5.42272 5.55831 5.60780 5.69660 5.85465 5.94994 6.17359 6.24460 6.27184 6.32813 6.46644 6.60850 6.69231 6.77413 6.84520 6.91590 7.07442 7.16466 7.44679 7.63299 7.75817 7.93940 8.11939 8.51305 9.10224 9.70010 11.16422 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.023766 B = 0.007530 C = 0.007330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.883851 B = 3717.519842 C = 3818.777578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.055 3.945 3 H 0.033 0.967 4 C -0.483 4.483 5 H 0.061 0.939 6 C 0.057 3.943 7 N -0.898 5.898 8 Si 0.887 3.113 9 H -0.283 1.283 10 H -0.290 1.290 11 H -0.275 1.275 12 C 0.088 3.912 13 H 0.047 0.953 14 C -0.077 4.077 15 C -0.114 4.114 16 C -0.094 4.094 17 C -0.133 4.133 18 C -0.135 4.135 19 C 0.062 3.938 20 F -0.145 7.145 21 C 0.079 3.921 22 N -0.440 5.440 23 C 0.015 3.985 24 H 0.077 0.923 25 H 0.008 0.992 26 H 0.031 0.969 27 H 0.257 0.743 28 H 0.070 0.930 29 H 0.109 0.891 30 H 0.123 0.877 31 H 0.127 0.873 32 H 0.130 0.870 33 H 0.028 0.972 34 H 0.080 0.920 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.104 -7.083 -11.199 13.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.037 3.963 3 H 0.051 0.949 4 C -0.522 4.522 5 H 0.079 0.921 6 C -0.143 4.143 7 N -0.538 5.538 8 Si 0.716 3.284 9 H -0.209 1.209 10 H -0.216 1.216 11 H -0.200 1.200 12 C -0.018 4.018 13 H 0.065 0.935 14 C -0.114 4.114 15 C -0.117 4.117 16 C -0.113 4.113 17 C -0.152 4.152 18 C -0.154 4.154 19 C 0.040 3.960 20 F -0.123 7.123 21 C -0.022 4.022 22 N -0.151 5.151 23 C -0.131 4.131 24 H 0.096 0.904 25 H 0.027 0.973 26 H 0.050 0.950 27 H 0.067 0.933 28 H 0.089 0.911 29 H 0.127 0.873 30 H 0.141 0.859 31 H 0.145 0.855 32 H 0.148 0.852 33 H 0.046 0.954 34 H 0.098 0.902 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.234 -6.788 -10.481 12.899 hybrid contribution 0.509 -0.246 0.328 0.654 sum 3.743 -7.034 -10.154 12.907 Atomic orbital electron populations 1.21777 0.98257 0.99202 0.99925 1.18656 0.91981 0.95743 0.89960 0.94912 1.21016 1.33286 1.08123 0.89758 0.92125 1.24926 0.95480 0.95029 0.98854 1.69911 1.41318 1.19295 1.23276 0.86666 0.78596 0.80123 0.83030 1.20938 1.21564 1.20048 1.23157 0.82600 0.95902 1.00106 0.93532 1.21497 0.94176 0.93597 1.02108 1.20738 0.95729 0.95081 1.00161 1.20426 0.97914 0.94476 0.98445 1.20692 0.92038 0.99701 1.02810 1.20751 1.00097 0.92470 1.02111 1.17120 0.81894 0.90913 1.06080 1.91412 1.52423 1.73487 1.95017 1.19994 0.92958 0.95349 0.93912 1.60639 1.09554 0.99339 1.45547 1.22589 1.00342 0.94506 0.95687 0.90388 0.97290 0.95004 0.93282 0.91101 0.87256 0.85861 0.85500 0.85202 0.95381 0.90173 0.90710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 8.80 37.16 0.33 -2.67 16 2 C 0.06 1.32 2.32 -91.77 -0.21 1.11 16 3 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 4 C -0.48 -12.87 7.07 -34.44 -0.24 -13.11 16 5 H 0.06 1.66 6.84 -52.49 -0.36 1.30 16 6 C 0.06 1.57 5.32 -17.82 -0.09 1.48 16 7 N -0.90 -25.58 11.73 55.43 0.65 -24.93 16 8 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 9 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 C 0.09 1.77 2.41 -66.13 -0.16 1.61 16 13 H 0.05 0.88 7.88 -51.93 -0.41 0.47 16 14 C -0.08 -1.40 5.16 -26.61 -0.14 -1.54 16 15 C -0.11 -1.98 6.23 -104.04 -0.65 -2.63 16 16 C -0.09 -1.34 10.03 -39.66 -0.40 -1.74 16 17 C -0.13 -1.71 10.06 -39.54 -0.40 -2.11 16 18 C -0.13 -1.90 10.00 -39.61 -0.40 -2.30 16 19 C 0.06 1.07 7.16 -39.14 -0.28 0.79 16 20 F -0.14 -2.53 15.21 2.25 0.03 -2.50 16 21 C 0.08 1.50 5.93 -83.29 -0.49 1.01 16 22 N -0.44 -9.04 4.30 -169.01 -0.73 -9.77 16 23 C 0.02 0.27 8.91 60.07 0.54 0.81 16 24 H 0.08 1.97 6.51 -51.93 -0.34 1.63 16 25 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 26 H 0.03 0.66 7.17 -51.93 -0.37 0.29 16 27 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.11 2.23 6.43 -51.93 -0.33 1.89 16 30 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 31 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 32 H 0.13 1.48 8.06 -52.48 -0.42 1.06 16 33 H 0.03 0.45 8.10 -51.93 -0.42 0.03 16 34 H 0.08 1.44 8.12 -51.93 -0.42 1.02 16 35 H 0.07 1.30 6.49 -51.93 -0.34 0.97 16 LS Contribution 285.94 15.07 4.31 4.31 Total: -1.00 -28.88 285.94 -8.02 -36.90 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -4.66 Total: -1.49 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: -2.60 Total: -19.29 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: -0.08 Total: -34.70 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.03 Total: -2.50 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.88 -8.02 -36.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261072472.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.763 kcal (2) G-P(sol) polarization free energy of solvation -28.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds