Wall clock time and date at job start Mon Mar 30 2020 06:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 H 1.08997 * 109.46987 * 2 1 4 4 C 1.50704 * 109.46922 * 119.99489 * 2 1 3 5 5 H 1.08000 * 119.99279 * 114.62836 * 4 2 1 6 6 C 1.37869 * 120.00270 * 294.63057 * 4 2 1 7 7 N 1.31510 * 120.00085 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99864 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47390 * 89.99827 * 8 6 4 10 10 H 1.48501 * 109.46758 * 209.99815 * 8 6 4 11 11 H 1.48495 * 109.46951 * 329.99522 * 8 6 4 12 12 C 1.52995 * 109.47060 * 239.99975 * 2 1 3 13 13 H 1.08998 * 110.84195 * 63.51177 * 12 2 1 14 14 C 1.54601 * 110.77910 * 300.10686 * 12 2 1 15 15 C 1.51579 * 102.87163 * 216.22338 * 14 12 2 16 16 C 1.37999 * 131.52815 * 196.12197 * 15 14 12 17 17 C 1.38263 * 120.12138 * 179.08249 * 16 15 14 18 18 C 1.38335 * 119.90059 * 0.27090 * 17 16 15 19 19 C 1.38067 * 120.23207 * 0.11740 * 18 17 16 20 20 F 1.35093 * 119.91828 * 180.02562 * 19 18 17 21 21 C 1.38865 * 107.98276 * 15.99573 * 15 14 12 22 22 N 1.40218 * 110.94556 * 1.12139 * 21 15 14 23 23 C 1.46903 * 110.99522 * 219.83864 * 22 21 15 24 24 H 1.08994 * 109.47098 * 299.99778 * 1 2 3 25 25 H 1.08996 * 109.47046 * 60.00473 * 1 2 3 26 26 H 1.09004 * 109.46466 * 180.02562 * 1 2 3 27 27 H 0.97006 * 120.00085 * 179.97438 * 7 6 4 28 28 H 1.08998 * 110.73341 * 97.88106 * 14 12 2 29 29 H 1.08996 * 110.88958 * 334.64199 * 14 12 2 30 30 H 1.08000 * 119.93755 * 359.35681 * 16 15 14 31 31 H 1.07996 * 120.05145 * 180.29579 * 17 16 15 32 32 H 1.08003 * 119.88352 * 180.13258 * 18 17 16 33 33 H 1.08999 * 109.47165 * 53.68765 * 23 22 21 34 34 H 1.09004 * 109.46575 * 173.68309 * 23 22 21 35 35 H 1.08993 * 109.47498 * 293.68033 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 1.2306 5 1 2.5799 -1.6363 1.1338 6 6 1.7930 -0.1782 2.4797 7 7 1.1268 0.9495 2.5974 8 14 2.4163 -1.0584 4.0050 9 1 3.7811 -0.5739 4.3332 10 1 1.5050 -0.7803 5.1440 11 1 2.4582 -2.5208 3.7501 12 6 2.0401 -0.7212 -1.2492 13 1 1.7410 -0.1902 -2.1529 14 6 1.5393 -2.1835 -1.2811 15 6 2.7137 -2.9296 -1.8827 16 6 2.8095 -4.1887 -2.4394 17 6 4.0175 -4.6344 -2.9433 18 6 5.1328 -3.8182 -2.8838 19 6 5.0447 -2.5606 -2.3207 20 9 6.1378 -1.7686 -2.2664 21 6 3.8288 -2.1055 -1.8080 22 7 3.5118 -0.8880 -1.1889 23 6 4.1869 0.2333 -1.8560 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 0.9581 1.3237 3.4764 28 1 0.6578 -2.2758 -1.9155 29 1 1.3280 -2.5440 -0.2744 30 1 1.9384 -4.8253 -2.4855 31 1 4.0901 -5.6181 -3.3830 32 1 6.0757 -4.1658 -3.2794 33 1 3.9598 0.2118 -2.9219 34 1 3.8377 1.1735 -1.4290 35 1 5.2638 0.1466 -1.7121 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261072472.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:17 Heat of formation + Delta-G solvation = -26.800847 kcal Electronic energy + Delta-G solvation = -18587.033535 eV Core-core repulsion = 15691.701049 eV Total energy + Delta-G solvation = -2895.332486 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.79481 -41.59712 -38.11220 -35.76813 -33.54032 -32.42904 -30.57406 -28.81893 -27.14590 -26.44479 -24.61280 -22.52952 -22.34906 -20.93368 -18.29426 -18.10824 -17.32584 -17.09769 -16.84164 -16.44953 -15.96660 -15.63493 -15.15647 -14.74556 -14.43078 -13.96578 -13.92560 -13.64460 -13.32729 -12.99743 -12.91968 -12.80940 -12.63299 -12.45823 -12.32873 -12.14335 -12.01944 -11.65184 -11.39122 -10.80377 -10.67173 -10.36597 -9.57268 -8.55141 -8.03300 -6.07702 0.27998 0.36181 1.39015 1.41498 1.50033 2.47369 2.62061 2.82646 3.29046 3.42606 3.63910 3.87669 4.03574 4.14040 4.24975 4.32287 4.42996 4.49675 4.63668 4.74035 4.82746 4.93129 4.96981 5.11201 5.11793 5.18780 5.26993 5.33974 5.45646 5.56542 5.69444 5.77589 5.94128 5.99959 6.20011 6.32855 6.49546 7.00274 7.56466 9.04449 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.023766 B = 0.007530 C = 0.007330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.883851 B = 3717.519842 C = 3818.777578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.055 3.945 3 H -0.004 1.004 4 C -0.480 4.480 5 H 0.049 0.951 6 C 0.008 3.992 7 N -0.925 5.925 8 Si 0.940 3.060 9 H -0.287 1.287 10 H -0.285 1.285 11 H -0.271 1.271 12 C 0.090 3.910 13 H 0.059 0.941 14 C -0.069 4.069 15 C -0.131 4.131 16 C -0.089 4.089 17 C -0.116 4.116 18 C -0.129 4.129 19 C 0.040 3.960 20 F -0.154 7.154 21 C 0.047 3.953 22 N -0.472 5.472 23 C 0.021 3.979 24 H 0.046 0.954 25 H 0.033 0.967 26 H 0.043 0.957 27 H 0.256 0.744 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.154 0.846 31 H 0.172 0.828 32 H 0.160 0.840 33 H 0.043 0.957 34 H 0.068 0.932 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.344 -9.844 -12.825 16.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.036 3.964 3 H 0.014 0.986 4 C -0.518 4.518 5 H 0.067 0.933 6 C -0.189 4.189 7 N -0.567 5.567 8 Si 0.767 3.233 9 H -0.214 1.214 10 H -0.210 1.210 11 H -0.195 1.195 12 C -0.015 4.015 13 H 0.076 0.924 14 C -0.107 4.107 15 C -0.134 4.134 16 C -0.107 4.107 17 C -0.134 4.134 18 C -0.148 4.148 19 C 0.018 3.982 20 F -0.133 7.133 21 C -0.054 4.054 22 N -0.184 5.184 23 C -0.126 4.126 24 H 0.065 0.935 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.114 0.886 29 H 0.102 0.898 30 H 0.172 0.828 31 H 0.189 0.811 32 H 0.177 0.823 33 H 0.061 0.939 34 H 0.087 0.913 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.480 -9.569 -12.117 15.827 hybrid contribution 0.489 0.540 0.743 1.040 sum 3.969 -9.029 -11.374 15.055 Atomic orbital electron populations 1.21598 0.97181 0.99810 0.99531 1.18555 0.92860 0.93836 0.91102 0.98607 1.21202 1.32205 1.07501 0.90904 0.93262 1.25577 0.96139 0.95811 1.01379 1.70029 1.42635 1.20458 1.23540 0.85833 0.77747 0.79311 0.80375 1.21402 1.21030 1.19537 1.22928 0.83248 0.97005 0.98348 0.92358 1.21323 0.95728 0.92225 1.01384 1.20830 0.94596 0.96434 1.01536 1.20849 0.99772 0.93313 0.96801 1.21233 0.90614 1.00927 1.00668 1.21190 1.01994 0.91012 1.00557 1.17526 0.81265 0.92183 1.07256 1.91382 1.52683 1.74015 1.95215 1.20182 0.94400 0.94976 0.95825 1.60609 1.09546 1.00711 1.47557 1.22525 1.00035 0.93649 0.96355 0.93545 0.94828 0.93767 0.93499 0.88579 0.89827 0.82844 0.81060 0.82264 0.93891 0.91338 0.90836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.56 8.80 71.99 0.63 -4.93 16 2 C 0.06 2.71 2.32 -11.54 -0.03 2.68 16 3 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 4 C -0.48 -26.15 7.07 25.60 0.18 -25.97 16 5 H 0.05 2.76 6.84 -2.91 -0.02 2.74 16 6 C 0.01 0.43 5.32 84.65 0.45 0.89 16 7 N -0.93 -54.23 11.73 21.44 0.25 -53.98 16 8 Si 0.94 45.46 29.54 68.60 2.03 47.49 16 9 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 10 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 11 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 12 C 0.09 3.66 2.41 45.20 0.11 3.77 16 13 H 0.06 2.18 7.88 -2.39 -0.02 2.16 16 14 C -0.07 -2.47 5.16 30.67 0.16 -2.31 16 15 C -0.13 -4.31 6.23 -19.49 -0.12 -4.43 16 16 C -0.09 -2.18 10.03 22.22 0.22 -1.95 16 17 C -0.12 -2.38 10.06 22.30 0.22 -2.15 16 18 C -0.13 -3.14 10.00 22.25 0.22 -2.92 16 19 C 0.04 1.31 7.16 22.55 0.16 1.48 16 20 F -0.15 -5.31 15.21 44.97 0.68 -4.63 16 21 C 0.05 1.73 5.93 38.27 0.23 1.95 16 22 N -0.47 -19.67 4.30 -688.62 -2.96 -22.63 16 23 C 0.02 0.76 8.91 127.69 1.14 1.90 16 24 H 0.05 2.39 6.51 -2.39 -0.02 2.37 16 25 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.04 1.84 7.17 -2.39 -0.02 1.82 16 27 H 0.26 14.45 8.31 -92.70 -0.77 13.68 16 28 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 29 H 0.08 3.39 6.43 -2.39 -0.02 3.37 16 30 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 31 H 0.17 2.07 8.06 -2.91 -0.02 2.05 16 32 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 33 H 0.04 1.40 8.10 -2.39 -0.02 1.38 16 34 H 0.07 2.59 8.12 -2.38 -0.02 2.57 16 35 H 0.07 2.65 6.49 -2.39 -0.02 2.63 16 Total: -1.00 -64.21 285.94 4.66 -59.55 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: 1.08 Total: 6.21 kcal Atomic # 6 Polarization: -35.58 SS G_CDS: 3.58 Total: -32.00 kcal Atomic # 7 Polarization: -73.91 SS G_CDS: -2.71 Total: -76.62 kcal Atomic # 9 Polarization: -5.31 SS G_CDS: 0.68 Total: -4.63 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -64.21 4.66 -59.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261072472.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.748 kcal (2) G-P(sol) polarization free energy of solvation -64.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds