Wall clock time and date at job start Mon Mar 30 2020 06:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08996 * 109.47018 * 2 1 4 4 C 1.50696 * 109.46882 * 119.99398 * 2 1 3 5 5 H 1.08009 * 119.99760 * 119.99966 * 4 2 1 6 6 C 1.37879 * 120.00371 * 299.99934 * 4 2 1 7 7 N 1.31513 * 119.99618 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00148 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46920 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46869 * 120.00034 * 8 6 4 11 11 H 1.48497 * 109.47232 * 240.00380 * 8 6 4 12 12 C 1.53000 * 109.46940 * 239.99415 * 2 1 3 13 13 H 1.08991 * 110.69410 * 296.70315 * 12 2 1 14 14 C 1.54593 * 110.77861 * 60.00213 * 12 2 1 15 15 C 1.51581 * 102.85537 * 144.03158 * 14 12 2 16 16 C 1.38007 * 131.53549 * 163.74424 * 15 14 12 17 17 C 1.38258 * 120.12049 * 180.37097 * 16 15 14 18 18 C 1.38335 * 119.90198 * 0.09068 * 17 16 15 19 19 C 1.38065 * 120.22906 * 359.87850 * 18 17 16 20 20 F 1.35106 * 119.91821 * 179.97438 * 19 18 17 21 21 C 1.38857 * 107.96998 * 343.96740 * 15 14 12 22 22 N 1.40207 * 110.95991 * 359.33097 * 21 15 14 23 23 C 1.46908 * 110.99972 * 256.50497 * 22 21 15 24 24 H 1.09004 * 109.46931 * 300.00477 * 1 2 3 25 25 H 1.09001 * 109.46584 * 60.00279 * 1 2 3 26 26 H 1.08998 * 109.47300 * 180.02562 * 1 2 3 27 27 H 0.97002 * 119.99667 * 179.97438 * 7 6 4 28 28 H 1.09001 * 110.73770 * 25.69260 * 14 12 2 29 29 H 1.09002 * 110.89710 * 262.44434 * 14 12 2 30 30 H 1.07993 * 119.93838 * 0.38460 * 16 15 14 31 31 H 1.08005 * 120.05097 * 180.11630 * 17 16 15 32 32 H 1.07999 * 119.88449 * 179.60063 * 18 17 16 33 33 H 1.08993 * 109.46996 * 179.97438 * 23 22 21 34 34 H 1.08997 * 109.46798 * 299.94276 * 23 22 21 35 35 H 1.09008 * 109.46839 * 59.94266 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2391 2.4828 7 7 0.9428 0.8299 2.6033 8 14 2.3213 -1.1200 4.0081 9 1 3.1464 -2.2867 3.6039 10 1 3.1466 -0.1870 4.8165 11 1 1.1660 -1.5863 4.8162 12 6 2.0400 -0.7214 -1.2492 13 1 1.7364 -1.7681 -1.2404 14 6 1.5415 -0.0164 -2.5315 15 6 2.7142 -0.1717 -3.4793 16 6 2.8093 -0.0285 -4.8487 17 6 4.0183 -0.2375 -5.4858 18 6 5.1339 -0.5926 -4.7489 19 6 5.0448 -0.7367 -3.3787 20 9 6.1382 -1.0842 -2.6652 21 6 3.8281 -0.5234 -2.7286 22 7 3.5098 -0.6023 -1.3655 23 6 4.0013 0.5774 -0.6409 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 0.7082 1.1611 3.4843 28 1 1.3380 1.0369 -2.3386 29 1 0.6560 -0.5126 -2.9288 30 1 1.9377 0.2476 -5.4235 31 1 4.0919 -0.1233 -6.5573 32 1 6.0767 -0.7621 -5.2477 33 1 3.7405 0.4907 0.4138 34 1 5.0846 0.6410 -0.7428 35 1 3.5438 1.4755 -1.0562 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261072473.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:22 Heat of formation + Delta-G solvation = -7.356894 kcal Electronic energy + Delta-G solvation = -18498.513556 eV Core-core repulsion = 15604.024223 eV Total energy + Delta-G solvation = -2894.489333 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.46607 -40.43718 -36.99501 -33.82994 -31.81545 -30.83489 -29.29964 -27.47480 -25.27074 -25.16095 -22.89329 -21.29776 -21.08735 -18.77903 -16.86554 -16.61520 -16.08587 -15.96315 -15.33501 -14.71233 -14.62276 -14.09411 -13.87144 -13.11810 -12.87369 -12.62306 -12.41605 -12.02852 -11.90423 -11.69508 -11.30837 -11.09565 -10.94501 -10.85016 -10.65799 -10.55823 -10.26549 -9.95058 -9.28831 -9.11929 -8.77581 -8.48285 -8.37509 -7.38704 -6.02740 -4.07243 1.36391 1.39858 3.29404 3.38282 3.44345 3.72367 4.12137 4.42582 4.59252 4.89153 4.96919 5.26867 5.29860 5.40684 5.54701 5.65576 5.73278 6.09314 6.15704 6.17725 6.18912 6.27716 6.41479 6.53015 6.58341 6.65059 6.83559 6.88643 7.01696 7.05073 7.12999 7.56493 7.67717 7.78766 7.89207 8.10370 8.39061 8.97462 9.56913 11.02978 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.032197 B = 0.006838 C = 0.005898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.444758 B = 4094.005040 C = 4746.059550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.041 3.959 3 H 0.036 0.964 4 C -0.503 4.503 5 H 0.063 0.937 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.889 3.111 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.094 3.906 13 H 0.085 0.915 14 C -0.108 4.108 15 C -0.114 4.114 16 C -0.104 4.104 17 C -0.118 4.118 18 C -0.146 4.146 19 C 0.094 3.906 20 F -0.139 7.139 21 C 0.070 3.930 22 N -0.478 5.478 23 C 0.026 3.974 24 H 0.085 0.915 25 H 0.009 0.991 26 H 0.027 0.973 27 H 0.259 0.741 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.123 0.877 31 H 0.129 0.871 32 H 0.133 0.867 33 H 0.119 0.881 34 H 0.049 0.951 35 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.499 -0.124 -13.023 13.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.022 3.978 3 H 0.054 0.946 4 C -0.541 4.541 5 H 0.081 0.919 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.717 3.283 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.212 1.212 12 C -0.012 4.012 13 H 0.103 0.897 14 C -0.146 4.146 15 C -0.117 4.117 16 C -0.122 4.122 17 C -0.137 4.137 18 C -0.165 4.165 19 C 0.073 3.927 20 F -0.118 7.118 21 C -0.028 4.028 22 N -0.194 5.194 23 C -0.119 4.119 24 H 0.104 0.896 25 H 0.028 0.972 26 H 0.046 0.954 27 H 0.069 0.931 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.141 0.859 31 H 0.147 0.853 32 H 0.151 0.849 33 H 0.138 0.862 34 H 0.067 0.933 35 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 3.716 -0.459 -12.518 13.066 hybrid contribution 0.153 0.068 0.579 0.603 sum 3.869 -0.391 -11.939 12.556 Atomic orbital electron populations 1.21802 0.98057 0.99287 1.00386 1.19018 0.92894 0.95862 0.89986 0.94589 1.21165 1.30538 1.12547 0.89885 0.91885 1.24959 0.95082 0.95001 0.98998 1.69892 1.36831 1.23023 1.23277 0.86565 0.78639 0.79909 0.83138 1.19636 1.21121 1.21157 1.22989 0.82943 1.00342 0.94973 0.89743 1.21928 0.95561 1.02456 0.94673 1.21207 0.96881 0.99314 0.94256 1.20450 0.97918 1.01043 0.92839 1.20771 0.91863 1.01439 0.99581 1.20831 1.00335 1.03963 0.91404 1.17245 0.81909 1.04388 0.89174 1.91469 1.52089 1.89722 1.78497 1.19949 0.92714 0.98136 0.92011 1.60130 1.15130 1.39316 1.04800 1.22664 0.98095 0.88407 1.02756 0.89595 0.97188 0.95360 0.93084 0.89842 0.90038 0.85919 0.85294 0.84927 0.86240 0.93263 0.95813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.74 37.16 0.32 -2.77 16 2 C 0.04 0.95 1.24 -91.77 -0.11 0.84 16 3 H 0.04 0.90 6.18 -51.93 -0.32 0.58 16 4 C -0.50 -13.09 6.51 -34.44 -0.22 -13.32 16 5 H 0.06 1.70 7.74 -52.48 -0.41 1.29 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.89 -24.45 11.32 55.43 0.63 -23.82 16 8 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 9 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 C 0.09 1.93 2.79 -66.32 -0.18 1.75 16 13 H 0.08 1.80 8.14 -51.93 -0.42 1.37 16 14 C -0.11 -1.86 5.40 -26.61 -0.14 -2.01 16 15 C -0.11 -1.89 6.23 -104.04 -0.65 -2.53 16 16 C -0.10 -1.39 10.03 -39.66 -0.40 -1.79 16 17 C -0.12 -1.42 10.06 -39.54 -0.40 -1.81 16 18 C -0.15 -1.97 10.00 -39.61 -0.40 -2.36 16 19 C 0.09 1.60 7.32 -39.14 -0.29 1.31 16 20 F -0.14 -2.51 17.27 2.25 0.04 -2.47 16 21 C 0.07 1.30 5.57 -83.29 -0.46 0.84 16 22 N -0.48 -9.91 5.22 -169.26 -0.88 -10.79 16 23 C 0.03 0.52 8.08 60.07 0.49 1.01 16 24 H 0.09 2.18 6.07 -51.93 -0.32 1.86 16 25 H 0.01 0.18 7.19 -51.93 -0.37 -0.19 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 28 H 0.08 1.46 7.78 -51.93 -0.40 1.05 16 29 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 31 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 32 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 33 H 0.12 2.74 5.24 -51.93 -0.27 2.47 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.02 0.47 7.63 -51.92 -0.40 0.07 16 LS Contribution 284.84 15.07 4.29 4.29 Total: -1.00 -27.59 284.84 -8.07 -35.66 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -4.58 Total: 0.50 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: -2.54 Total: -19.33 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: -0.26 Total: -34.61 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.04 Total: -2.47 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -27.59 -8.07 -35.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261072473.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.306 kcal (2) G-P(sol) polarization free energy of solvation -27.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds