Wall clock time and date at job start Mon Mar 30 2020 06:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08996 * 109.47018 * 2 1 4 4 C 1.50696 * 109.46882 * 119.99398 * 2 1 3 5 5 H 1.08009 * 119.99760 * 119.99966 * 4 2 1 6 6 C 1.37879 * 120.00371 * 299.99934 * 4 2 1 7 7 N 1.31513 * 119.99618 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00148 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46920 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46869 * 120.00034 * 8 6 4 11 11 H 1.48497 * 109.47232 * 240.00380 * 8 6 4 12 12 C 1.53000 * 109.46940 * 239.99415 * 2 1 3 13 13 H 1.08991 * 110.69410 * 296.70315 * 12 2 1 14 14 C 1.54593 * 110.77861 * 60.00213 * 12 2 1 15 15 C 1.51581 * 102.85537 * 144.03158 * 14 12 2 16 16 C 1.38007 * 131.53549 * 163.74424 * 15 14 12 17 17 C 1.38258 * 120.12049 * 180.37097 * 16 15 14 18 18 C 1.38335 * 119.90198 * 0.09068 * 17 16 15 19 19 C 1.38065 * 120.22906 * 359.87850 * 18 17 16 20 20 F 1.35106 * 119.91821 * 179.97438 * 19 18 17 21 21 C 1.38857 * 107.96998 * 343.96740 * 15 14 12 22 22 N 1.40207 * 110.95991 * 359.33097 * 21 15 14 23 23 C 1.46908 * 110.99972 * 256.50497 * 22 21 15 24 24 H 1.09004 * 109.46931 * 300.00477 * 1 2 3 25 25 H 1.09001 * 109.46584 * 60.00279 * 1 2 3 26 26 H 1.08998 * 109.47300 * 180.02562 * 1 2 3 27 27 H 0.97002 * 119.99667 * 179.97438 * 7 6 4 28 28 H 1.09001 * 110.73770 * 25.69260 * 14 12 2 29 29 H 1.09002 * 110.89710 * 262.44434 * 14 12 2 30 30 H 1.07993 * 119.93838 * 0.38460 * 16 15 14 31 31 H 1.08005 * 120.05097 * 180.11630 * 17 16 15 32 32 H 1.07999 * 119.88449 * 179.60063 * 18 17 16 33 33 H 1.08993 * 109.46996 * 179.97438 * 23 22 21 34 34 H 1.08997 * 109.46798 * 299.94276 * 23 22 21 35 35 H 1.09008 * 109.46839 * 59.94266 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2391 2.4828 7 7 0.9428 0.8299 2.6033 8 14 2.3213 -1.1200 4.0081 9 1 3.1464 -2.2867 3.6039 10 1 3.1466 -0.1870 4.8165 11 1 1.1660 -1.5863 4.8162 12 6 2.0400 -0.7214 -1.2492 13 1 1.7364 -1.7681 -1.2404 14 6 1.5415 -0.0164 -2.5315 15 6 2.7142 -0.1717 -3.4793 16 6 2.8093 -0.0285 -4.8487 17 6 4.0183 -0.2375 -5.4858 18 6 5.1339 -0.5926 -4.7489 19 6 5.0448 -0.7367 -3.3787 20 9 6.1382 -1.0842 -2.6652 21 6 3.8281 -0.5234 -2.7286 22 7 3.5098 -0.6023 -1.3655 23 6 4.0013 0.5774 -0.6409 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 0.7082 1.1611 3.4843 28 1 1.3380 1.0369 -2.3386 29 1 0.6560 -0.5126 -2.9288 30 1 1.9377 0.2476 -5.4235 31 1 4.0919 -0.1233 -6.5573 32 1 6.0767 -0.7621 -5.2477 33 1 3.7405 0.4907 0.4138 34 1 5.0846 0.6410 -0.7428 35 1 3.5438 1.4755 -1.0562 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261072473.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:22 Heat of formation + Delta-G solvation = -22.488945 kcal Electronic energy + Delta-G solvation = -18499.169731 eV Core-core repulsion = 15604.024223 eV Total energy + Delta-G solvation = -2895.145508 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.76987 -41.80601 -38.32175 -35.64127 -33.31052 -32.50213 -30.55447 -28.92285 -27.16346 -26.74904 -24.46225 -22.51343 -22.43278 -20.48202 -18.49561 -18.12234 -17.44966 -17.30067 -16.77124 -16.51873 -15.96746 -15.53268 -15.33559 -14.66932 -14.18758 -14.11834 -13.99691 -13.71044 -13.26004 -13.11289 -12.98257 -12.80340 -12.54388 -12.40947 -12.31917 -12.16224 -11.99365 -11.82407 -11.10929 -10.89267 -10.43867 -10.26915 -9.62715 -8.79903 -8.07816 -6.16920 0.22768 0.24377 1.38457 1.42516 1.53179 2.44227 2.59281 2.77831 3.20574 3.38323 3.63353 3.90485 4.07548 4.13053 4.31503 4.34350 4.46321 4.55432 4.64097 4.75686 4.84901 4.93138 5.06127 5.10797 5.12807 5.20625 5.27429 5.32336 5.39512 5.49134 5.65963 5.79982 5.91861 6.00183 6.16343 6.37387 6.45149 6.90745 7.48876 8.96735 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.032197 B = 0.006838 C = 0.005898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.444758 B = 4094.005040 C = 4746.059550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.045 3.955 3 H 0.015 0.985 4 C -0.508 4.508 5 H 0.046 0.954 6 C 0.018 3.982 7 N -0.914 5.914 8 Si 0.943 3.057 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.281 1.281 12 C 0.095 3.905 13 H 0.071 0.929 14 C -0.098 4.098 15 C -0.124 4.124 16 C -0.097 4.097 17 C -0.097 4.097 18 C -0.138 4.138 19 C 0.069 3.931 20 F -0.154 7.154 21 C 0.031 3.969 22 N -0.499 5.499 23 C 0.040 3.960 24 H 0.057 0.943 25 H 0.038 0.962 26 H 0.028 0.972 27 H 0.260 0.740 28 H 0.079 0.921 29 H 0.102 0.898 30 H 0.156 0.844 31 H 0.177 0.823 32 H 0.163 0.837 33 H 0.087 0.913 34 H 0.055 0.945 35 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.631 -0.215 -16.041 16.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.027 3.973 3 H 0.033 0.967 4 C -0.546 4.546 5 H 0.064 0.936 6 C -0.180 4.180 7 N -0.554 5.554 8 Si 0.770 3.230 9 H -0.200 1.200 10 H -0.208 1.208 11 H -0.206 1.206 12 C -0.012 4.012 13 H 0.089 0.911 14 C -0.136 4.136 15 C -0.127 4.127 16 C -0.115 4.115 17 C -0.115 4.115 18 C -0.156 4.156 19 C 0.048 3.952 20 F -0.133 7.133 21 C -0.066 4.066 22 N -0.216 5.216 23 C -0.106 4.106 24 H 0.076 0.924 25 H 0.056 0.944 26 H 0.047 0.953 27 H 0.069 0.931 28 H 0.097 0.903 29 H 0.120 0.880 30 H 0.174 0.826 31 H 0.194 0.806 32 H 0.180 0.820 33 H 0.106 0.894 34 H 0.073 0.927 35 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 3.850 -0.556 -15.551 16.030 hybrid contribution 0.164 0.100 1.386 1.399 sum 4.014 -0.456 -14.165 14.730 Atomic orbital electron populations 1.21646 0.97431 0.99203 1.00338 1.18877 0.93315 0.94587 0.90558 0.96744 1.21318 1.29969 1.11963 0.91362 0.93612 1.25554 0.95472 0.95702 1.01294 1.69993 1.37776 1.23999 1.23681 0.85731 0.78129 0.78778 0.80367 1.19987 1.20830 1.20647 1.22734 0.83591 0.99447 0.95396 0.91102 1.21762 0.96759 1.01838 0.93271 1.21249 0.95429 1.00453 0.95580 1.20885 0.99847 0.99325 0.91438 1.21344 0.90327 0.98176 1.01662 1.21264 1.02361 1.02268 0.89751 1.17713 0.81148 1.05733 0.90611 1.91424 1.52649 1.90084 1.79156 1.20099 0.94430 1.01149 0.90932 1.60069 1.15036 1.39473 1.06990 1.22390 0.98366 0.88895 1.00902 0.92409 0.94355 0.95329 0.93104 0.90272 0.87985 0.82612 0.80588 0.81954 0.89416 0.92651 0.95949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.85 8.74 71.99 0.63 -5.22 16 2 C 0.05 2.17 1.24 -11.54 -0.01 2.16 16 3 H 0.01 0.76 6.18 -2.39 -0.01 0.74 16 4 C -0.51 -27.44 6.51 25.60 0.17 -27.27 16 5 H 0.05 2.58 7.74 -2.91 -0.02 2.56 16 6 C 0.02 1.00 5.30 84.66 0.45 1.45 16 7 N -0.91 -51.51 11.32 21.45 0.24 -51.27 16 8 Si 0.94 44.15 29.54 68.60 2.03 46.17 16 9 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 10 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 C 0.09 3.97 2.79 45.26 0.13 4.10 16 13 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 14 C -0.10 -3.28 5.40 30.67 0.17 -3.11 16 15 C -0.12 -3.86 6.23 -19.49 -0.12 -3.99 16 16 C -0.10 -2.15 10.03 22.22 0.22 -1.93 16 17 C -0.10 -1.80 10.06 22.30 0.22 -1.57 16 18 C -0.14 -3.17 10.00 22.25 0.22 -2.95 16 19 C 0.07 2.26 7.32 22.55 0.17 2.42 16 20 F -0.15 -5.56 17.27 44.97 0.78 -4.78 16 21 C 0.03 1.15 5.57 38.27 0.21 1.36 16 22 N -0.50 -21.25 5.22 -689.43 -3.60 -24.85 16 23 C 0.04 1.71 8.08 127.69 1.03 2.75 16 24 H 0.06 2.98 6.07 -2.39 -0.01 2.97 16 25 H 0.04 1.49 7.19 -2.39 -0.02 1.47 16 26 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 28 H 0.08 2.68 7.78 -2.39 -0.02 2.67 16 29 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 30 H 0.16 2.47 8.06 -2.91 -0.02 2.44 16 31 H 0.18 1.71 8.06 -2.91 -0.02 1.69 16 32 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 33 H 0.09 4.28 5.24 -2.39 -0.01 4.27 16 34 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.02 0.92 7.63 -2.38 -0.02 0.90 16 Total: -1.00 -62.13 284.84 4.01 -58.12 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: 1.08 Total: 8.41 kcal Atomic # 6 Polarization: -35.28 SS G_CDS: 3.48 Total: -31.80 kcal Atomic # 7 Polarization: -72.76 SS G_CDS: -3.36 Total: -76.12 kcal Atomic # 9 Polarization: -5.56 SS G_CDS: 0.78 Total: -4.78 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -62.13 4.01 -58.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261072473.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.632 kcal (2) G-P(sol) polarization free energy of solvation -62.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds