Wall clock time and date at job start Mon Mar 30 2020 06:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47253 * 2 1 4 4 C 1.50698 * 109.47232 * 240.00526 * 2 1 3 5 5 H 1.08000 * 120.00347 * 245.56498 * 4 2 1 6 6 C 1.37885 * 120.00262 * 65.56232 * 4 2 1 7 7 N 1.31519 * 119.99508 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00184 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47279 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47345 * 120.00028 * 8 6 4 11 11 H 1.48506 * 109.47103 * 239.99703 * 8 6 4 12 12 C 1.52992 * 109.47520 * 120.00301 * 2 1 3 13 13 H 1.09004 * 110.84380 * 297.92851 * 12 2 1 14 14 C 1.54595 * 110.78283 * 174.52138 * 12 2 1 15 15 C 1.51578 * 102.86636 * 216.17889 * 14 12 2 16 16 C 1.37996 * 131.53751 * 196.30696 * 15 14 12 17 17 C 1.38267 * 120.12594 * 179.33910 * 16 15 14 18 18 C 1.38335 * 119.89563 * 0.25975 * 17 16 15 19 19 C 1.38063 * 120.23058 * 359.60986 * 18 17 16 20 20 F 1.35103 * 119.91581 * 180.25684 * 19 18 17 21 21 C 1.38867 * 107.97350 * 15.93027 * 15 14 12 22 22 N 1.40218 * 110.94906 * 0.82072 * 21 15 14 23 23 C 1.46896 * 110.99849 * 219.76701 * 22 21 15 24 24 H 1.08996 * 109.47279 * 52.69224 * 1 2 3 25 25 H 1.08998 * 109.46369 * 172.69252 * 1 2 3 26 26 H 1.08995 * 109.46761 * 292.69474 * 1 2 3 27 27 H 0.97002 * 119.99615 * 179.97438 * 7 6 4 28 28 H 1.09005 * 110.73057 * 97.83947 * 14 12 2 29 29 H 1.08995 * 110.73785 * 334.52538 * 14 12 2 30 30 H 1.08003 * 119.94254 * 359.32048 * 16 15 14 31 31 H 1.08001 * 120.05295 * 179.97438 * 17 16 15 32 32 H 1.07997 * 119.87911 * 179.86594 * 18 17 16 33 33 H 1.09004 * 109.47231 * 53.40427 * 23 22 21 34 34 H 1.08999 * 109.47201 * 173.39835 * 23 22 21 35 35 H 1.08996 * 109.47361 * 293.40692 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.5772 -1.6378 -1.1341 6 6 1.7965 -0.1761 -2.4796 7 7 1.1326 0.9532 -2.5970 8 14 2.4186 -1.0569 -4.0048 9 1 3.1297 -2.2975 -3.6046 10 1 1.2695 -1.4045 -4.8790 11 1 3.3515 -0.1684 -4.7436 12 6 2.0401 -0.7213 1.2491 13 1 1.7196 -0.2042 2.1536 14 6 3.5794 -0.8595 1.2126 15 6 3.8116 -2.2165 1.8467 16 6 4.9470 -2.7989 2.3719 17 6 4.8881 -4.0697 2.9137 18 6 3.6892 -4.7599 2.9239 19 6 2.5495 -4.1811 2.4023 20 9 1.3809 -4.8589 2.4203 21 6 2.6026 -2.8996 1.8518 22 7 1.5894 -2.1301 1.2624 23 6 0.3256 -2.2717 1.9976 24 1 -0.3633 0.6228 -0.8174 25 1 -0.3632 -1.0193 -0.1307 26 1 -0.3633 0.3965 0.9481 27 1 0.9669 1.3292 -3.4757 28 1 4.0516 -0.0727 1.8010 29 1 3.9438 -0.8461 0.1854 30 1 5.8837 -2.2613 2.3596 31 1 5.7775 -4.5245 3.3240 32 1 3.6439 -5.7533 3.3452 33 1 0.4918 -2.0503 3.0519 34 1 -0.4103 -1.5772 1.5923 35 1 -0.0424 -3.2924 1.8944 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261072474.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:26 Heat of formation + Delta-G solvation = -24.350886 kcal Electronic energy + Delta-G solvation = -18646.379058 eV Core-core repulsion = 15751.152810 eV Total energy + Delta-G solvation = -2895.226248 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.78390 -41.61604 -38.17883 -35.58363 -33.40628 -32.67681 -30.52286 -29.13430 -27.10860 -26.44065 -24.34597 -22.64062 -22.15110 -21.10333 -18.52798 -18.04221 -17.35265 -17.00293 -16.83426 -16.44386 -16.02920 -15.50449 -15.13087 -14.50198 -14.39290 -14.09326 -13.90827 -13.67035 -13.39705 -13.24339 -12.97917 -12.83448 -12.60727 -12.40993 -12.23991 -12.13195 -11.99811 -11.46148 -11.40497 -10.77826 -10.63442 -10.39107 -9.56890 -8.53371 -8.04308 -6.08500 0.28393 0.36784 1.38041 1.41913 1.52232 2.47105 2.62802 2.83439 3.27881 3.43301 3.64255 3.90388 4.04262 4.16380 4.26590 4.33656 4.46254 4.50299 4.64843 4.71312 4.86687 4.90186 4.98336 5.08672 5.11302 5.21211 5.30421 5.34590 5.47283 5.59763 5.61772 5.82470 5.94106 6.03898 6.13623 6.33319 6.50680 6.99660 7.55771 9.03742 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.024261 B = 0.007713 C = 0.007149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.855084 B = 3629.384876 C = 3915.531219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.053 3.947 3 H 0.016 0.984 4 C -0.483 4.483 5 H 0.050 0.950 6 C 0.009 3.991 7 N -0.924 5.924 8 Si 0.940 3.060 9 H -0.275 1.275 10 H -0.288 1.288 11 H -0.280 1.280 12 C 0.092 3.908 13 H 0.058 0.942 14 C -0.077 4.077 15 C -0.130 4.130 16 C -0.090 4.090 17 C -0.116 4.116 18 C -0.129 4.129 19 C 0.041 3.959 20 F -0.153 7.153 21 C 0.048 3.952 22 N -0.469 5.469 23 C 0.011 3.989 24 H 0.040 0.960 25 H 0.033 0.967 26 H 0.030 0.970 27 H 0.256 0.744 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.152 0.848 31 H 0.171 0.829 32 H 0.160 0.840 33 H 0.038 0.962 34 H 0.084 0.916 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.353 -7.681 12.590 16.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.034 3.966 3 H 0.034 0.966 4 C -0.521 4.521 5 H 0.068 0.932 6 C -0.188 4.188 7 N -0.565 5.565 8 Si 0.768 3.232 9 H -0.199 1.199 10 H -0.214 1.214 11 H -0.206 1.206 12 C -0.014 4.014 13 H 0.076 0.924 14 C -0.114 4.114 15 C -0.133 4.133 16 C -0.109 4.109 17 C -0.135 4.135 18 C -0.148 4.148 19 C 0.019 3.981 20 F -0.132 7.132 21 C -0.053 4.053 22 N -0.181 5.181 23 C -0.135 4.135 24 H 0.059 0.941 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.066 0.934 28 H 0.111 0.889 29 H 0.104 0.896 30 H 0.170 0.830 31 H 0.189 0.811 32 H 0.177 0.823 33 H 0.057 0.943 34 H 0.102 0.898 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.035 -7.690 11.902 15.402 hybrid contribution -0.431 -0.102 -0.708 0.836 sum 5.604 -7.792 11.194 14.745 Atomic orbital electron populations 1.21668 0.98479 0.99315 0.98304 1.18605 0.92841 0.94004 0.91103 0.96589 1.21248 1.33102 1.06788 0.91006 0.93198 1.25591 0.96136 0.95715 1.01366 1.70040 1.42578 1.20324 1.23567 0.85766 0.77938 0.78809 0.80676 1.19939 1.21435 1.20635 1.22850 0.94379 0.85741 0.98398 0.92423 1.21386 0.95097 0.93400 1.01496 1.20795 0.93599 0.97354 1.01536 1.20843 0.97277 0.95834 0.96936 1.21222 0.97915 0.93834 1.00516 1.21184 0.90873 1.01773 1.00970 1.17497 0.83202 0.90237 1.07199 1.91386 1.46960 1.79605 1.95280 1.20166 0.94802 0.94302 0.95984 1.60279 1.02863 1.08506 1.46493 1.22766 0.91502 1.03610 0.95596 0.94098 0.94758 0.95093 0.93442 0.88877 0.89626 0.83017 0.81127 0.82266 0.94298 0.89761 0.91007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.67 7.43 71.98 0.53 -5.13 16 2 C 0.05 2.59 2.22 -11.54 -0.03 2.56 16 3 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 4 C -0.48 -26.12 6.92 25.60 0.18 -25.94 16 5 H 0.05 2.79 6.89 -2.91 -0.02 2.77 16 6 C 0.01 0.50 5.33 84.66 0.45 0.95 16 7 N -0.92 -53.61 11.82 21.45 0.25 -53.36 16 8 Si 0.94 45.05 29.54 68.60 2.03 47.08 16 9 H -0.27 -13.07 7.11 99.48 0.71 -12.36 16 10 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 12 C 0.09 3.72 2.51 45.26 0.11 3.83 16 13 H 0.06 2.14 7.87 -2.38 -0.02 2.12 16 14 C -0.08 -2.80 6.27 30.67 0.19 -2.61 16 15 C -0.13 -4.32 6.23 -19.49 -0.12 -4.44 16 16 C -0.09 -2.26 10.03 22.22 0.22 -2.04 16 17 C -0.12 -2.43 10.06 22.30 0.22 -2.20 16 18 C -0.13 -3.16 10.00 22.25 0.22 -2.94 16 19 C 0.04 1.34 7.15 22.55 0.16 1.50 16 20 F -0.15 -5.22 15.22 44.97 0.68 -4.54 16 21 C 0.05 1.77 5.94 38.27 0.23 1.99 16 22 N -0.47 -19.03 4.26 -689.43 -2.94 -21.97 16 23 C 0.01 0.40 8.50 127.69 1.09 1.49 16 24 H 0.04 2.15 6.71 -2.39 -0.02 2.13 16 25 H 0.03 1.62 6.56 -2.39 -0.02 1.60 16 26 H 0.03 1.25 7.77 -2.39 -0.02 1.23 16 27 H 0.26 14.30 8.31 -92.71 -0.77 13.52 16 28 H 0.09 2.86 8.14 -2.38 -0.02 2.84 16 29 H 0.09 3.59 6.32 -2.39 -0.02 3.57 16 30 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 31 H 0.17 2.13 8.06 -2.91 -0.02 2.11 16 32 H 0.16 2.91 8.06 -2.91 -0.02 2.88 16 33 H 0.04 1.24 8.10 -2.39 -0.02 1.22 16 34 H 0.08 3.00 4.97 -2.39 -0.01 2.99 16 35 H 0.07 2.51 6.51 -2.39 -0.02 2.49 16 Total: -1.00 -62.94 281.19 4.58 -58.35 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: 1.09 Total: 7.41 kcal Atomic # 6 Polarization: -36.44 SS G_CDS: 3.47 Total: -32.97 kcal Atomic # 7 Polarization: -72.64 SS G_CDS: -2.68 Total: -75.33 kcal Atomic # 9 Polarization: -5.22 SS G_CDS: 0.68 Total: -4.54 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -62.94 4.58 -58.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261072474.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.004 kcal (2) G-P(sol) polarization free energy of solvation -62.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds