Wall clock time and date at job start Mon Mar 30 2020 06:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47308 * 2 1 4 4 N 1.46907 * 109.46935 * 120.00375 * 2 1 3 5 5 C 1.40214 * 110.99626 * 300.82909 * 4 2 1 6 6 C 1.38904 * 110.94505 * 103.49852 * 5 4 2 7 7 C 1.37958 * 120.49085 * 180.47988 * 6 5 4 8 8 C 1.38305 * 120.12256 * 0.12779 * 7 6 5 9 9 C 1.38287 * 119.89953 * 359.37810 * 8 7 6 10 10 C 1.38113 * 120.23112 * 0.68050 * 9 8 7 11 11 F 1.35101 * 119.92336 * 179.77502 * 10 9 8 12 12 C 1.51573 * 107.96779 * 0.66989 * 6 5 4 13 13 C 1.47905 * 111.00415 * 60.78021 * 4 2 1 14 14 H 1.08993 * 110.77927 * 147.15872 * 13 4 2 15 15 C 1.50695 * 110.77873 * 23.72168 * 13 4 2 16 16 H 1.08008 * 119.99853 * 12.18934 * 15 13 4 17 17 C 1.37874 * 120.00247 * 192.18711 * 15 13 4 18 18 N 1.31512 * 120.00054 * 0.02562 * 17 15 13 19 19 Si 1.86804 * 120.00176 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47169 * 90.00042 * 19 17 15 21 21 H 1.48500 * 109.46984 * 210.00123 * 19 17 15 22 22 H 1.48495 * 109.47212 * 329.99997 * 19 17 15 23 23 H 1.09000 * 109.47206 * 299.99913 * 1 2 3 24 24 H 1.08998 * 109.47368 * 59.99723 * 1 2 3 25 25 H 1.09006 * 109.47074 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46744 * 239.99852 * 2 1 3 27 27 H 1.09005 * 109.47213 * 173.02474 * 3 2 1 28 28 H 1.09002 * 109.47055 * 293.02616 * 3 2 1 29 29 H 1.09002 * 109.47028 * 53.02582 * 3 2 1 30 30 H 1.07999 * 119.93753 * 179.86015 * 7 6 5 31 31 H 1.08005 * 120.05029 * 179.65631 * 8 7 6 32 32 H 1.08002 * 119.88731 * 180.39799 * 9 8 7 33 33 H 1.09000 * 110.73740 * 134.37741 * 12 6 5 34 34 H 1.09002 * 110.73609 * 257.51383 * 12 6 5 35 35 H 0.96997 * 120.00426 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6926 1.1995 5 6 1.5546 -0.0678 2.3654 6 6 0.5153 -0.7917 2.9358 7 6 -0.0967 -0.3470 4.0895 8 6 0.3198 0.8286 4.6873 9 6 1.3603 1.5523 4.1342 10 6 1.9760 1.1126 2.9787 11 9 2.9889 1.8269 2.4411 12 6 0.2757 -2.0195 2.0800 13 6 1.5608 -2.0985 1.2243 14 1 2.3033 -2.7392 1.6999 15 6 1.2472 -2.5831 -0.1677 16 1 1.5526 -2.0001 -1.0241 17 6 0.5706 -3.7708 -0.3482 18 7 0.1983 -4.4804 0.6946 19 14 0.1825 -4.3719 -2.0737 20 1 1.2979 -5.2201 -2.5650 21 1 -1.0713 -5.1674 -2.0505 22 1 0.0122 -3.2060 -2.9775 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 3.1229 1.4450 0.1248 28 1 1.7822 1.9190 -0.9458 29 1 1.5784 1.9910 0.8210 30 1 -0.9055 -0.9156 4.5242 31 1 -0.1639 1.1785 5.5874 32 1 1.6896 2.4669 4.6048 33 1 0.1707 -2.9087 2.7016 34 1 -0.6033 -1.8850 1.4496 35 1 -0.2781 -5.3158 0.5677 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261073385.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:11 Heat of formation + Delta-G solvation = 3.844042 kcal Electronic energy + Delta-G solvation = -19168.659446 eV Core-core repulsion = 16274.655822 eV Total energy + Delta-G solvation = -2894.003624 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.29781 -40.32143 -36.74458 -33.26803 -32.28030 -30.23009 -28.91747 -27.57480 -26.13326 -25.16324 -22.04876 -21.40721 -20.44657 -19.32666 -16.67034 -16.34102 -15.78027 -15.56565 -15.46734 -14.78221 -14.19758 -14.02984 -13.55378 -13.17000 -12.81202 -12.28189 -12.07165 -11.97802 -11.42979 -11.38617 -11.32548 -11.24163 -10.98511 -10.88418 -10.69058 -10.49842 -10.26501 -10.09869 -9.72632 -8.99104 -8.64656 -8.54585 -8.10194 -7.03032 -6.21079 -4.24332 1.69983 1.73864 3.21507 3.29077 3.31286 4.06350 4.26475 4.53827 4.89665 5.11574 5.27952 5.38797 5.62402 5.68048 5.79354 5.88211 5.98044 6.10921 6.24575 6.36266 6.45517 6.47551 6.56278 6.59669 6.69634 6.73851 6.80914 6.91076 7.12825 7.17832 7.30202 7.46879 7.60821 7.71838 7.77869 8.00561 8.41203 8.78059 9.39635 10.87589 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.030085 B = 0.008619 C = 0.007340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.459500 B = 3248.028584 C = 3813.693834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.093 3.907 3 C -0.151 4.151 4 N -0.490 5.490 5 C 0.077 3.923 6 C -0.105 4.105 7 C -0.113 4.113 8 C -0.120 4.120 9 C -0.157 4.157 10 C 0.088 3.912 11 F -0.143 7.143 12 C -0.082 4.082 13 C 0.216 3.784 14 H 0.052 0.948 15 C -0.525 4.525 16 H 0.075 0.925 17 C 0.067 3.933 18 N -0.885 5.885 19 Si 0.895 3.105 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.272 1.272 23 H 0.038 0.962 24 H 0.040 0.960 25 H 0.098 0.902 26 H 0.100 0.900 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.047 0.953 30 H 0.119 0.881 31 H 0.124 0.876 32 H 0.127 0.873 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.120 8.574 3.902 9.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.013 4.013 3 C -0.209 4.209 4 N -0.207 5.207 5 C -0.021 4.021 6 C -0.107 4.107 7 C -0.132 4.132 8 C -0.139 4.139 9 C -0.176 4.176 10 C 0.067 3.933 11 F -0.122 7.122 12 C -0.120 4.120 13 C 0.111 3.889 14 H 0.069 0.931 15 C -0.563 4.563 16 H 0.093 0.907 17 C -0.137 4.137 18 N -0.522 5.522 19 Si 0.723 3.277 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.197 1.197 23 H 0.057 0.943 24 H 0.060 0.940 25 H 0.117 0.883 26 H 0.118 0.882 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.137 0.863 31 H 0.142 0.858 32 H 0.145 0.855 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.588 8.419 3.821 9.264 hybrid contribution -0.876 -0.309 -0.783 1.215 sum -1.464 8.110 3.038 8.783 Atomic orbital electron populations 1.22758 0.97200 1.04737 0.99596 1.21633 0.93328 0.92644 0.93671 1.22133 1.01671 0.96529 1.00566 1.60611 1.56318 1.04922 0.98827 1.19788 0.93945 0.93076 0.95316 1.21770 0.93643 0.99366 0.95963 1.20485 1.00708 0.96578 0.95397 1.20721 0.97501 0.95330 1.00334 1.20718 0.99098 1.01808 0.95992 1.17225 0.89879 0.91551 0.94673 1.91431 1.57795 1.77324 1.85604 1.21943 1.01943 0.91984 0.96165 1.20241 0.90685 0.81765 0.96239 0.93070 1.21294 1.37226 1.06453 0.91326 0.90735 1.24932 0.95398 0.96223 0.97113 1.69966 1.38656 1.14440 1.29166 0.86525 0.77873 0.79015 0.84298 1.20486 1.21173 1.19693 0.94297 0.94044 0.88304 0.88227 0.92099 0.93187 0.93364 0.86287 0.85814 0.85495 0.90105 0.89947 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.66 7.55 37.16 0.28 -3.38 16 2 C 0.09 1.88 2.50 -67.71 -0.17 1.71 16 3 C -0.15 -2.70 7.75 37.15 0.29 -2.42 16 4 N -0.49 -10.86 5.13 -155.32 -0.80 -11.66 16 5 C 0.08 1.59 4.29 -83.29 -0.36 1.24 16 6 C -0.10 -2.11 5.33 -104.05 -0.55 -2.66 16 7 C -0.11 -1.91 10.03 -39.66 -0.40 -2.30 16 8 C -0.12 -1.77 10.06 -39.54 -0.40 -2.17 16 9 C -0.16 -2.46 10.00 -39.61 -0.40 -2.86 16 10 C 0.09 1.65 6.06 -39.14 -0.24 1.41 16 11 F -0.14 -2.68 14.47 2.25 0.03 -2.65 16 12 C -0.08 -1.85 4.43 -26.61 -0.12 -1.97 16 13 C 0.22 5.22 3.38 -67.47 -0.23 5.00 16 14 H 0.05 1.37 8.14 -51.93 -0.42 0.95 16 15 C -0.52 -13.17 6.05 -34.44 -0.21 -13.38 16 16 H 0.07 1.85 5.22 -52.48 -0.27 1.58 16 17 C 0.07 1.70 5.30 -17.82 -0.09 1.61 16 18 N -0.89 -23.38 11.90 55.43 0.66 -22.72 16 19 Si 0.90 20.00 29.54 -169.99 -5.02 14.98 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 23 H 0.04 0.76 6.67 -51.93 -0.35 0.42 16 24 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.10 2.19 3.99 -51.93 -0.21 1.98 16 26 H 0.10 2.12 5.70 -51.93 -0.30 1.83 16 27 H 0.06 1.10 7.55 -51.93 -0.39 0.71 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.87 5.71 -51.93 -0.30 0.57 16 30 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 31 H 0.12 1.41 8.06 -52.48 -0.42 0.98 16 32 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 33 H 0.08 1.92 7.77 -51.93 -0.40 1.52 16 34 H 0.08 1.94 5.87 -51.93 -0.31 1.63 16 35 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 270.49 15.07 4.08 4.08 Total: -1.00 -26.03 270.49 -7.83 -33.86 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -4.19 Total: 4.28 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: -2.59 Total: -20.17 kcal Atomic # 7 Polarization: -34.24 SS G_CDS: -0.14 Total: -34.38 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.03 Total: -2.65 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -26.03 -7.83 -33.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261073385.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.708 kcal (2) G-P(sol) polarization free energy of solvation -26.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds