Wall clock time and date at job start Mon Mar 30 2020 06:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47308 * 2 1 4 4 N 1.46907 * 109.46935 * 120.00375 * 2 1 3 5 5 C 1.40214 * 110.99626 * 300.82909 * 4 2 1 6 6 C 1.38904 * 110.94505 * 103.49852 * 5 4 2 7 7 C 1.37958 * 120.49085 * 180.47988 * 6 5 4 8 8 C 1.38305 * 120.12256 * 0.12779 * 7 6 5 9 9 C 1.38287 * 119.89953 * 359.37810 * 8 7 6 10 10 C 1.38113 * 120.23112 * 0.68050 * 9 8 7 11 11 F 1.35101 * 119.92336 * 179.77502 * 10 9 8 12 12 C 1.51573 * 107.96779 * 0.66989 * 6 5 4 13 13 C 1.47905 * 111.00415 * 60.78021 * 4 2 1 14 14 H 1.08993 * 110.77927 * 147.15872 * 13 4 2 15 15 C 1.50695 * 110.77873 * 23.72168 * 13 4 2 16 16 H 1.08008 * 119.99853 * 12.18934 * 15 13 4 17 17 C 1.37874 * 120.00247 * 192.18711 * 15 13 4 18 18 N 1.31512 * 120.00054 * 0.02562 * 17 15 13 19 19 Si 1.86804 * 120.00176 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47169 * 90.00042 * 19 17 15 21 21 H 1.48500 * 109.46984 * 210.00123 * 19 17 15 22 22 H 1.48495 * 109.47212 * 329.99997 * 19 17 15 23 23 H 1.09000 * 109.47206 * 299.99913 * 1 2 3 24 24 H 1.08998 * 109.47368 * 59.99723 * 1 2 3 25 25 H 1.09006 * 109.47074 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46744 * 239.99852 * 2 1 3 27 27 H 1.09005 * 109.47213 * 173.02474 * 3 2 1 28 28 H 1.09002 * 109.47055 * 293.02616 * 3 2 1 29 29 H 1.09002 * 109.47028 * 53.02582 * 3 2 1 30 30 H 1.07999 * 119.93753 * 179.86015 * 7 6 5 31 31 H 1.08005 * 120.05029 * 179.65631 * 8 7 6 32 32 H 1.08002 * 119.88731 * 180.39799 * 9 8 7 33 33 H 1.09000 * 110.73740 * 134.37741 * 12 6 5 34 34 H 1.09002 * 110.73609 * 257.51383 * 12 6 5 35 35 H 0.96997 * 120.00426 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6926 1.1995 5 6 1.5546 -0.0678 2.3654 6 6 0.5153 -0.7917 2.9358 7 6 -0.0967 -0.3470 4.0895 8 6 0.3198 0.8286 4.6873 9 6 1.3603 1.5523 4.1342 10 6 1.9760 1.1126 2.9787 11 9 2.9889 1.8269 2.4411 12 6 0.2757 -2.0195 2.0800 13 6 1.5608 -2.0985 1.2243 14 1 2.3033 -2.7392 1.6999 15 6 1.2472 -2.5831 -0.1677 16 1 1.5526 -2.0001 -1.0241 17 6 0.5706 -3.7708 -0.3482 18 7 0.1983 -4.4804 0.6946 19 14 0.1825 -4.3719 -2.0737 20 1 1.2979 -5.2201 -2.5650 21 1 -1.0713 -5.1674 -2.0505 22 1 0.0122 -3.2060 -2.9775 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 3.1229 1.4450 0.1248 28 1 1.7822 1.9190 -0.9458 29 1 1.5784 1.9910 0.8210 30 1 -0.9055 -0.9156 4.5242 31 1 -0.1639 1.1785 5.5874 32 1 1.6896 2.4669 4.6048 33 1 0.1707 -2.9087 2.7016 34 1 -0.6033 -1.8850 1.4496 35 1 -0.2781 -5.3158 0.5677 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261073385.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:11 Heat of formation + Delta-G solvation = -10.286767 kcal Electronic energy + Delta-G solvation = -19169.272203 eV Core-core repulsion = 16274.655822 eV Total energy + Delta-G solvation = -2894.616382 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.72401 -41.90522 -38.18839 -35.07878 -33.95143 -31.70355 -30.55733 -29.14391 -27.68054 -26.96866 -23.51107 -23.03754 -22.08351 -20.88928 -18.32987 -17.99277 -17.25476 -17.13798 -17.05526 -16.40061 -15.72707 -15.69915 -15.00239 -14.78425 -14.31582 -13.84380 -13.74047 -13.48188 -13.10522 -12.94708 -12.86402 -12.78679 -12.75750 -12.56143 -12.30171 -12.10595 -11.84698 -11.82505 -11.37228 -10.81691 -10.59830 -10.14945 -9.51091 -8.62742 -8.17622 -6.26261 0.31560 0.36771 1.42073 1.44276 1.52927 2.39389 2.69102 2.99686 3.14234 3.49535 3.90443 4.06155 4.08351 4.30365 4.36637 4.42419 4.52914 4.64926 4.71508 4.76841 4.86665 4.92501 4.97551 5.14807 5.19442 5.21356 5.32248 5.44796 5.49030 5.62686 5.66498 5.71212 5.77011 5.91158 6.03534 6.23190 6.70050 6.82310 7.40128 8.90950 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.030085 B = 0.008619 C = 0.007340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.459500 B = 3248.028584 C = 3813.693834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.089 3.911 3 C -0.138 4.138 4 N -0.503 5.503 5 C 0.051 3.949 6 C -0.130 4.130 7 C -0.112 4.112 8 C -0.100 4.100 9 C -0.143 4.143 10 C 0.074 3.926 11 F -0.147 7.147 12 C -0.063 4.063 13 C 0.214 3.786 14 H 0.010 0.990 15 C -0.528 4.528 16 H 0.074 0.926 17 C 0.023 3.977 18 N -0.913 5.913 19 Si 0.955 3.045 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.265 1.265 23 H 0.038 0.962 24 H 0.061 0.939 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.053 0.947 28 H 0.074 0.926 29 H 0.047 0.953 30 H 0.139 0.861 31 H 0.173 0.827 32 H 0.165 0.835 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.868 10.861 4.768 12.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.016 4.016 3 C -0.196 4.196 4 N -0.220 5.220 5 C -0.047 4.047 6 C -0.133 4.133 7 C -0.131 4.131 8 C -0.118 4.118 9 C -0.162 4.162 10 C 0.053 3.947 11 F -0.125 7.125 12 C -0.102 4.102 13 C 0.108 3.892 14 H 0.028 0.972 15 C -0.566 4.566 16 H 0.092 0.908 17 C -0.177 4.177 18 N -0.551 5.551 19 Si 0.780 3.220 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.189 1.189 23 H 0.057 0.943 24 H 0.080 0.920 25 H 0.090 0.910 26 H 0.101 0.899 27 H 0.073 0.927 28 H 0.093 0.907 29 H 0.066 0.934 30 H 0.156 0.844 31 H 0.190 0.810 32 H 0.182 0.818 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.332 10.726 4.691 11.782 hybrid contribution -0.620 -0.956 -0.944 1.479 sum -1.952 9.770 3.747 10.645 Atomic orbital electron populations 1.22573 0.96844 1.03180 1.00468 1.21670 0.93646 0.93852 0.92450 1.22008 1.01036 0.94678 1.01874 1.60523 1.57100 1.04025 1.00385 1.19900 0.95061 0.94566 0.95194 1.21624 0.95236 0.98700 0.97723 1.20828 1.00627 0.97516 0.94083 1.21238 0.96259 0.93448 1.00864 1.21204 0.98071 1.02661 0.94224 1.17513 0.90329 0.91143 0.95735 1.91419 1.58043 1.77191 1.85882 1.21501 1.00310 0.92573 0.95801 1.19973 0.90392 0.82953 0.95886 0.97236 1.21476 1.36817 1.06577 0.91758 0.90788 1.25627 0.95375 0.96385 1.00341 1.70088 1.39412 1.14720 1.30868 0.85593 0.77445 0.78530 0.80388 1.20514 1.20986 1.18885 0.94313 0.92035 0.91035 0.89908 0.92747 0.90729 0.93363 0.84356 0.80999 0.81764 0.92620 0.91587 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.84 7.55 71.98 0.54 -6.29 16 2 C 0.09 3.66 2.50 44.91 0.11 3.77 16 3 C -0.14 -4.78 7.75 71.98 0.56 -4.22 16 4 N -0.50 -22.98 5.13 -645.31 -3.31 -26.29 16 5 C 0.05 2.08 4.29 38.27 0.16 2.25 16 6 C -0.13 -5.25 5.33 -19.49 -0.10 -5.35 16 7 C -0.11 -3.51 10.03 22.22 0.22 -3.28 16 8 C -0.10 -2.47 10.06 22.30 0.22 -2.24 16 9 C -0.14 -3.85 10.00 22.25 0.22 -3.63 16 10 C 0.07 2.62 6.06 22.55 0.14 2.75 16 11 F -0.15 -5.25 14.47 44.97 0.65 -4.60 16 12 C -0.06 -2.99 4.43 30.67 0.14 -2.86 16 13 C 0.21 10.95 3.38 44.52 0.15 11.10 16 14 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 15 C -0.53 -27.62 6.05 25.60 0.15 -27.46 16 16 H 0.07 3.80 5.22 -2.91 -0.02 3.79 16 17 C 0.02 1.23 5.30 84.65 0.45 1.67 16 18 N -0.91 -50.18 11.90 21.45 0.26 -49.93 16 19 Si 0.95 41.82 29.54 68.60 2.03 43.85 16 20 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 21 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 22 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 23 H 0.04 1.50 6.67 -2.39 -0.02 1.49 16 24 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 25 H 0.07 3.25 3.99 -2.38 -0.01 3.24 16 26 H 0.08 3.61 5.70 -2.39 -0.01 3.60 16 27 H 0.05 1.93 7.55 -2.38 -0.02 1.91 16 28 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.05 1.66 5.71 -2.39 -0.01 1.64 16 30 H 0.14 3.74 8.06 -2.91 -0.02 3.72 16 31 H 0.17 2.69 8.06 -2.91 -0.02 2.67 16 32 H 0.16 3.25 8.06 -2.91 -0.02 3.22 16 33 H 0.06 2.82 7.77 -2.39 -0.02 2.80 16 34 H 0.07 3.27 5.87 -2.39 -0.01 3.26 16 35 H 0.26 13.84 8.31 -92.71 -0.77 13.07 16 Total: -1.00 -58.79 270.49 3.70 -55.09 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 1.10 Total: 15.69 kcal Atomic # 6 Polarization: -36.77 SS G_CDS: 2.97 Total: -33.80 kcal Atomic # 7 Polarization: -73.17 SS G_CDS: -3.05 Total: -76.22 kcal Atomic # 9 Polarization: -5.25 SS G_CDS: 0.65 Total: -4.60 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -58.79 3.70 -55.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261073385.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.803 kcal (2) G-P(sol) polarization free energy of solvation -58.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds