Wall clock time and date at job start Mon Mar 30 2020 06:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47173 * 2 1 4 4 N 1.46900 * 109.47167 * 119.99671 * 2 1 3 5 5 C 1.40202 * 110.99925 * 55.07392 * 4 2 1 6 6 C 1.38900 * 110.95027 * 103.37776 * 5 4 2 7 7 C 1.37955 * 120.49500 * 180.47043 * 6 5 4 8 8 C 1.38307 * 120.12445 * 359.69220 * 7 6 5 9 9 C 1.38280 * 119.89687 * 359.97438 * 8 7 6 10 10 C 1.38118 * 120.23502 * 0.15694 * 9 8 7 11 11 F 1.35099 * 119.91679 * 179.97438 * 10 9 8 12 12 C 1.52085 * 108.00608 * 0.76915 * 6 5 4 13 13 C 1.47920 * 111.00061 * 175.00129 * 4 2 1 14 14 H 1.09005 * 110.77540 * 23.97094 * 13 4 2 15 15 C 1.50698 * 110.77947 * 147.21045 * 13 4 2 16 16 H 1.08005 * 119.99819 * 357.41086 * 15 13 4 17 17 C 1.37875 * 120.00046 * 177.40427 * 15 13 4 18 18 N 1.31511 * 120.00192 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 119.99979 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47297 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47261 * 60.00310 * 19 17 15 22 22 H 1.48500 * 109.47454 * 300.00304 * 19 17 15 23 23 H 1.09002 * 109.47096 * 299.99857 * 1 2 3 24 24 H 1.08999 * 109.47153 * 60.00514 * 1 2 3 25 25 H 1.09004 * 109.46521 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47797 * 240.00143 * 2 1 3 27 27 H 1.08999 * 109.47286 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.46661 * 299.99787 * 3 2 1 29 29 H 1.09006 * 109.46792 * 59.99622 * 3 2 1 30 30 H 1.07999 * 119.94037 * 179.71798 * 7 6 5 31 31 H 1.07998 * 120.05173 * 179.97438 * 8 7 6 32 32 H 1.08004 * 119.88825 * 180.14132 * 9 8 7 33 33 H 1.09001 * 110.79649 * 257.73537 * 12 6 5 34 34 H 1.09002 * 110.90183 * 134.26065 * 12 6 5 35 35 H 0.97001 * 119.99934 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.4806 -1.9835 1.2895 6 6 2.4167 -2.9396 0.9166 7 6 2.0893 -4.2798 0.9233 8 6 0.8239 -4.6833 1.3090 9 6 -0.1141 -3.7410 1.6889 10 6 0.2070 -2.3977 1.6815 11 9 -0.7145 -1.4825 2.0534 12 6 3.7081 -2.2195 0.5606 13 6 3.4934 -0.8172 1.1750 14 1 3.9363 -0.0466 0.5440 15 6 4.0587 -0.7526 2.5705 16 1 3.4020 -0.5880 3.4120 17 6 5.4140 -0.9038 2.7729 18 7 6.2137 -1.1040 1.7482 19 14 6.1146 -0.8245 4.5027 20 1 7.5865 -1.0145 4.4500 21 1 5.5063 -1.8951 5.3328 22 1 5.8081 0.4998 5.1007 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 3.1300 1.4426 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 2.8227 -5.0153 0.6273 31 1 0.5688 -5.7327 1.3134 32 1 -1.1015 -4.0564 1.9922 33 1 3.8285 -2.1527 -0.5206 34 1 4.5667 -2.7130 1.0159 35 1 5.8499 -1.1456 0.8500 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261073389.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:16 Heat of formation + Delta-G solvation = -8.563768 kcal Electronic energy + Delta-G solvation = -18941.455654 eV Core-core repulsion = 16046.913987 eV Total energy + Delta-G solvation = -2894.541667 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.36344 -40.19157 -36.74076 -34.07837 -32.23942 -30.35043 -28.77998 -27.45460 -26.51403 -24.94597 -21.94051 -21.63953 -20.63472 -19.48517 -17.16789 -16.87061 -16.05725 -15.55581 -15.39583 -14.41890 -14.20860 -14.07616 -13.69950 -13.18589 -12.98521 -12.67883 -12.29266 -12.04605 -11.84559 -11.67627 -11.45619 -11.05152 -11.00932 -10.82413 -10.74561 -10.66062 -10.41127 -10.22241 -10.08781 -8.93106 -8.70038 -8.46845 -8.15071 -7.13625 -6.42283 -4.14779 1.64737 1.68888 3.43356 3.44217 3.63074 4.00144 4.25982 4.51064 4.82347 5.17516 5.19928 5.25977 5.36272 5.39324 5.59393 5.67107 5.73544 5.91175 5.96565 6.06845 6.16501 6.19354 6.27133 6.32106 6.44582 6.50250 6.59158 6.66850 6.71371 6.86148 6.93412 7.08138 7.31697 7.68481 7.96471 8.12774 8.50430 8.77384 9.54005 10.93853 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.020276 B = 0.009444 C = 0.007903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.599968 B = 2964.185854 C = 3542.023018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.080 3.920 3 C -0.141 4.141 4 N -0.475 5.475 5 C 0.085 3.915 6 C -0.089 4.089 7 C -0.110 4.110 8 C -0.118 4.118 9 C -0.154 4.154 10 C 0.090 3.910 11 F -0.142 7.142 12 C -0.116 4.116 13 C 0.204 3.796 14 H 0.047 0.953 15 C -0.574 4.574 16 H 0.058 0.942 17 C 0.021 3.979 18 N -0.912 5.912 19 Si 1.070 2.930 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.287 1.287 23 H 0.067 0.933 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.036 0.964 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.120 0.880 31 H 0.126 0.874 32 H 0.129 0.871 33 H 0.054 0.946 34 H 0.097 0.903 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.507 -3.100 -3.927 10.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.026 4.026 3 C -0.198 4.198 4 N -0.193 5.193 5 C -0.013 4.013 6 C -0.092 4.092 7 C -0.128 4.128 8 C -0.137 4.137 9 C -0.173 4.173 10 C 0.069 3.931 11 F -0.121 7.121 12 C -0.155 4.155 13 C 0.099 3.901 14 H 0.065 0.935 15 C -0.612 4.612 16 H 0.077 0.923 17 C -0.183 4.183 18 N -0.548 5.548 19 Si 0.898 3.102 20 H -0.208 1.208 21 H -0.214 1.214 22 H -0.213 1.213 23 H 0.086 0.914 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.054 0.946 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.138 0.862 31 H 0.144 0.856 32 H 0.147 0.853 33 H 0.072 0.928 34 H 0.115 0.885 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.263 -2.738 -2.634 9.094 hybrid contribution -1.386 -0.304 -1.359 1.965 sum -9.649 -3.041 -3.993 10.876 Atomic orbital electron populations 1.22107 0.94822 1.01932 1.01846 1.21631 0.95120 0.95314 0.90523 1.21856 1.01885 0.94749 1.01344 1.60319 1.10057 1.13134 1.35778 1.19601 0.92112 0.91566 0.98052 1.21322 0.97222 0.93315 0.97334 1.20469 0.96511 0.94573 1.01289 1.20715 0.92983 0.98759 1.01231 1.20733 1.00928 0.90680 1.04998 1.17169 0.85733 0.86237 1.03953 1.91434 1.65063 1.66175 1.89405 1.22235 0.94737 0.99863 0.98665 1.20481 0.80423 0.91060 0.98143 0.93528 1.21795 0.94629 1.53194 0.91608 0.92322 1.25794 0.93314 0.93629 1.05575 1.70841 1.38122 1.45938 0.99947 0.83509 0.76047 0.76723 0.73897 1.20767 1.21416 1.21300 0.91428 0.92816 0.92787 0.94565 0.91844 0.92887 0.91808 0.86194 0.85587 0.85276 0.92797 0.88496 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 7.78 37.16 0.29 -2.19 16 2 C 0.08 1.50 2.49 -67.71 -0.17 1.34 16 3 C -0.14 -2.44 9.16 37.16 0.34 -2.09 16 4 N -0.48 -10.62 4.59 -155.31 -0.71 -11.34 16 5 C 0.09 1.82 5.01 -83.30 -0.42 1.40 16 6 C -0.09 -1.87 6.24 -103.79 -0.65 -2.51 16 7 C -0.11 -1.92 10.03 -39.66 -0.40 -2.32 16 8 C -0.12 -1.80 10.06 -39.54 -0.40 -2.19 16 9 C -0.15 -2.47 10.00 -39.61 -0.40 -2.87 16 10 C 0.09 1.73 5.80 -39.14 -0.23 1.50 16 11 F -0.14 -2.71 14.58 2.25 0.03 -2.67 16 12 C -0.12 -2.64 5.48 -26.36 -0.14 -2.78 16 13 C 0.20 5.01 1.95 -67.47 -0.13 4.88 16 14 H 0.05 1.18 5.78 -51.93 -0.30 0.88 16 15 C -0.57 -15.90 8.82 -34.44 -0.30 -16.20 16 16 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 17 C 0.02 0.57 5.13 -17.82 -0.09 0.48 16 18 N -0.91 -26.05 13.00 55.43 0.72 -25.33 16 19 Si 1.07 24.97 29.90 -169.99 -5.08 19.88 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 23 H 0.07 1.16 7.52 -51.93 -0.39 0.77 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.05 0.92 5.26 -51.93 -0.27 0.65 16 26 H 0.04 0.68 8.10 -51.93 -0.42 0.26 16 27 H 0.06 1.19 6.29 -51.93 -0.33 0.86 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 31 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.13 1.68 8.06 -52.48 -0.42 1.26 16 33 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.10 2.42 6.54 -51.93 -0.34 2.08 16 35 H 0.27 7.51 6.10 -40.82 -0.25 7.26 16 LS Contribution 281.49 15.07 4.24 4.24 Total: -1.00 -29.32 281.49 -7.96 -37.28 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -4.47 Total: 1.49 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: -2.69 Total: -23.56 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: 0.01 Total: -36.67 kcal Atomic # 9 Polarization: -2.71 SS G_CDS: 0.03 Total: -2.67 kcal Atomic # 14 Polarization: 24.97 SS G_CDS: -5.08 Total: 19.88 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.32 -7.96 -37.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261073389.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.719 kcal (2) G-P(sol) polarization free energy of solvation -29.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds