Wall clock time and date at job start Mon Mar 30 2020 06:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47173 * 2 1 4 4 N 1.46900 * 109.47167 * 119.99671 * 2 1 3 5 5 C 1.40202 * 110.99925 * 55.07392 * 4 2 1 6 6 C 1.38900 * 110.95027 * 103.37776 * 5 4 2 7 7 C 1.37955 * 120.49500 * 180.47043 * 6 5 4 8 8 C 1.38307 * 120.12445 * 359.69220 * 7 6 5 9 9 C 1.38280 * 119.89687 * 359.97438 * 8 7 6 10 10 C 1.38118 * 120.23502 * 0.15694 * 9 8 7 11 11 F 1.35099 * 119.91679 * 179.97438 * 10 9 8 12 12 C 1.52085 * 108.00608 * 0.76915 * 6 5 4 13 13 C 1.47920 * 111.00061 * 175.00129 * 4 2 1 14 14 H 1.09005 * 110.77540 * 23.97094 * 13 4 2 15 15 C 1.50698 * 110.77947 * 147.21045 * 13 4 2 16 16 H 1.08005 * 119.99819 * 357.41086 * 15 13 4 17 17 C 1.37875 * 120.00046 * 177.40427 * 15 13 4 18 18 N 1.31511 * 120.00192 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 119.99979 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47297 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47261 * 60.00310 * 19 17 15 22 22 H 1.48500 * 109.47454 * 300.00304 * 19 17 15 23 23 H 1.09002 * 109.47096 * 299.99857 * 1 2 3 24 24 H 1.08999 * 109.47153 * 60.00514 * 1 2 3 25 25 H 1.09004 * 109.46521 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47797 * 240.00143 * 2 1 3 27 27 H 1.08999 * 109.47286 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.46661 * 299.99787 * 3 2 1 29 29 H 1.09006 * 109.46792 * 59.99622 * 3 2 1 30 30 H 1.07999 * 119.94037 * 179.71798 * 7 6 5 31 31 H 1.07998 * 120.05173 * 179.97438 * 8 7 6 32 32 H 1.08004 * 119.88825 * 180.14132 * 9 8 7 33 33 H 1.09001 * 110.79649 * 257.73537 * 12 6 5 34 34 H 1.09002 * 110.90183 * 134.26065 * 12 6 5 35 35 H 0.97001 * 119.99934 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.4806 -1.9835 1.2895 6 6 2.4167 -2.9396 0.9166 7 6 2.0893 -4.2798 0.9233 8 6 0.8239 -4.6833 1.3090 9 6 -0.1141 -3.7410 1.6889 10 6 0.2070 -2.3977 1.6815 11 9 -0.7145 -1.4825 2.0534 12 6 3.7081 -2.2195 0.5606 13 6 3.4934 -0.8172 1.1750 14 1 3.9363 -0.0466 0.5440 15 6 4.0587 -0.7526 2.5705 16 1 3.4020 -0.5880 3.4120 17 6 5.4140 -0.9038 2.7729 18 7 6.2137 -1.1040 1.7482 19 14 6.1146 -0.8245 4.5027 20 1 7.5865 -1.0145 4.4500 21 1 5.5063 -1.8951 5.3328 22 1 5.8081 0.4998 5.1007 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 3.1300 1.4426 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 2.8227 -5.0153 0.6273 31 1 0.5688 -5.7327 1.3134 32 1 -1.1015 -4.0564 1.9922 33 1 3.8285 -2.1527 -0.5206 34 1 4.5667 -2.7130 1.0159 35 1 5.8499 -1.1456 0.8500 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261073389.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:15 Heat of formation + Delta-G solvation = -25.130583 kcal Electronic energy + Delta-G solvation = -18942.174045 eV Core-core repulsion = 16046.913987 eV Total energy + Delta-G solvation = -2895.260058 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.81084 -41.76011 -38.17941 -35.86924 -33.98910 -31.81637 -30.37107 -29.01618 -27.94268 -26.93970 -23.44582 -23.24750 -22.22124 -21.01975 -19.16726 -18.36546 -17.50112 -17.02969 -16.86132 -16.00462 -15.84556 -15.62489 -15.45486 -14.72607 -14.54449 -14.31907 -13.92859 -13.53676 -13.32706 -13.13040 -13.03605 -12.62019 -12.56861 -12.46413 -12.38758 -12.27201 -11.98167 -11.91894 -11.79179 -10.81516 -10.56476 -10.32996 -9.59952 -8.79081 -8.56503 -6.35353 0.23795 0.29458 1.51778 1.58240 1.78779 2.51024 2.60987 2.78061 3.13789 3.41219 3.66241 3.90011 3.96947 3.98379 4.17687 4.25873 4.33528 4.38671 4.47627 4.58355 4.68923 4.71366 4.80910 4.83726 4.98309 5.06860 5.18908 5.19760 5.24134 5.25026 5.40699 5.56118 5.79365 5.90153 6.06434 6.34303 6.45123 6.62564 7.40078 8.74736 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.020276 B = 0.009444 C = 0.007903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.599968 B = 2964.185854 C = 3542.023018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.074 3.926 3 C -0.134 4.134 4 N -0.493 5.493 5 C 0.055 3.945 6 C -0.121 4.121 7 C -0.111 4.111 8 C -0.099 4.099 9 C -0.140 4.140 10 C 0.074 3.926 11 F -0.146 7.146 12 C -0.105 4.105 13 C 0.202 3.798 14 H 0.029 0.971 15 C -0.587 4.587 16 H 0.035 0.965 17 C -0.020 4.020 18 N -0.930 5.930 19 Si 1.111 2.889 20 H -0.278 1.278 21 H -0.277 1.277 22 H -0.275 1.275 23 H 0.057 0.943 24 H 0.084 0.916 25 H 0.048 0.952 26 H 0.031 0.969 27 H 0.038 0.962 28 H 0.088 0.912 29 H 0.055 0.945 30 H 0.140 0.860 31 H 0.176 0.824 32 H 0.168 0.832 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.381 -4.695 -3.819 12.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.032 4.032 3 C -0.192 4.192 4 N -0.210 5.210 5 C -0.043 4.043 6 C -0.124 4.124 7 C -0.130 4.130 8 C -0.117 4.117 9 C -0.159 4.159 10 C 0.053 3.947 11 F -0.125 7.125 12 C -0.144 4.144 13 C 0.096 3.904 14 H 0.046 0.954 15 C -0.625 4.625 16 H 0.054 0.946 17 C -0.219 4.219 18 N -0.567 5.567 19 Si 0.934 3.066 20 H -0.204 1.204 21 H -0.203 1.203 22 H -0.200 1.200 23 H 0.076 0.924 24 H 0.103 0.897 25 H 0.067 0.933 26 H 0.049 0.951 27 H 0.058 0.942 28 H 0.107 0.893 29 H 0.074 0.926 30 H 0.158 0.842 31 H 0.193 0.807 32 H 0.185 0.815 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.163 -4.334 -2.541 11.337 hybrid contribution -0.887 0.144 -1.431 1.690 sum -11.050 -4.190 -3.972 12.468 Atomic orbital electron populations 1.22001 0.92736 1.01908 1.02838 1.21799 0.96744 0.95404 0.89214 1.21815 1.00282 0.94432 1.02654 1.60289 1.08513 1.14575 1.37656 1.19822 0.93531 0.91047 0.99892 1.21321 0.96080 0.94994 0.99967 1.20838 0.98253 0.93368 1.00531 1.21250 0.91220 1.00978 0.98300 1.21237 1.02730 0.89111 1.02848 1.17480 0.85047 0.87547 1.04637 1.91420 1.64888 1.66634 1.89523 1.21906 0.95079 0.98845 0.98563 1.20227 0.82332 0.91531 0.96274 0.95371 1.21975 0.94754 1.53280 0.92501 0.94635 1.27013 0.93843 0.92833 1.08212 1.70920 1.38311 1.47366 1.00075 0.82986 0.75647 0.77547 0.70460 1.20352 1.20292 1.20040 0.92376 0.89727 0.93276 0.95051 0.94247 0.89340 0.92612 0.84240 0.80708 0.81467 0.92234 0.91428 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.40 7.78 71.98 0.56 -3.84 16 2 C 0.07 2.81 2.49 44.92 0.11 2.92 16 3 C -0.13 -4.71 9.16 71.98 0.66 -4.05 16 4 N -0.49 -22.64 4.59 -645.28 -2.96 -25.60 16 5 C 0.05 2.35 5.01 38.28 0.19 2.54 16 6 C -0.12 -5.06 6.24 -19.33 -0.12 -5.18 16 7 C -0.11 -3.65 10.03 22.22 0.22 -3.42 16 8 C -0.10 -2.57 10.06 22.30 0.22 -2.34 16 9 C -0.14 -3.95 10.00 22.25 0.22 -3.72 16 10 C 0.07 2.72 5.80 22.56 0.13 2.85 16 11 F -0.15 -5.37 14.58 44.97 0.66 -4.72 16 12 C -0.10 -4.96 5.48 30.83 0.17 -4.79 16 13 C 0.20 10.41 1.95 44.51 0.09 10.50 16 14 H 0.03 1.54 5.78 -2.38 -0.01 1.52 16 15 C -0.59 -33.84 8.82 25.60 0.23 -33.61 16 16 H 0.04 2.15 7.81 -2.91 -0.02 2.13 16 17 C -0.02 -1.13 5.13 84.65 0.43 -0.69 16 18 N -0.93 -54.77 13.00 21.45 0.28 -54.49 16 19 Si 1.11 50.96 29.90 68.60 2.05 53.01 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 21 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 22 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 23 H 0.06 1.95 7.52 -2.39 -0.02 1.94 16 24 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 25 H 0.05 1.61 5.26 -2.38 -0.01 1.60 16 26 H 0.03 1.21 8.10 -2.39 -0.02 1.19 16 27 H 0.04 1.54 6.29 -2.39 -0.02 1.53 16 28 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.05 2.00 8.14 -2.38 -0.02 1.99 16 30 H 0.14 3.93 8.06 -2.91 -0.02 3.91 16 31 H 0.18 2.88 8.06 -2.91 -0.02 2.85 16 32 H 0.17 3.42 8.06 -2.91 -0.02 3.40 16 33 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 34 H 0.07 3.53 6.54 -2.39 -0.02 3.52 16 35 H 0.26 15.34 6.10 -92.71 -0.57 14.77 16 Total: -1.00 -66.16 281.49 4.43 -61.73 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 1.29 Total: 12.93 kcal Atomic # 6 Polarization: -45.97 SS G_CDS: 3.12 Total: -42.86 kcal Atomic # 7 Polarization: -77.41 SS G_CDS: -2.68 Total: -80.10 kcal Atomic # 9 Polarization: -5.37 SS G_CDS: 0.66 Total: -4.72 kcal Atomic # 14 Polarization: 50.96 SS G_CDS: 2.05 Total: 53.01 kcal Total: -66.16 4.43 -61.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261073389.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.601 kcal (2) G-P(sol) polarization free energy of solvation -66.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds