Wall clock time and date at job start Mon Mar 30 2020 06:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.47205 * 2 1 4 4 C 1.50698 * 109.47398 * 240.00194 * 2 1 3 5 5 H 1.08006 * 119.99946 * 240.00387 * 4 2 1 6 6 C 1.37869 * 120.00249 * 59.99971 * 4 2 1 7 7 N 1.31509 * 120.00073 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00221 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47166 * 89.99625 * 8 6 4 10 10 H 1.48493 * 109.47500 * 209.99890 * 8 6 4 11 11 H 1.48502 * 109.46880 * 329.99972 * 8 6 4 12 12 C 1.53003 * 109.46949 * 119.99880 * 2 1 3 13 13 H 1.09001 * 110.65517 * 302.16465 * 12 2 1 14 14 C 1.54589 * 110.73576 * 65.55243 * 12 2 1 15 15 N 1.47912 * 102.63053 * 143.90080 * 14 12 2 16 16 C 1.46900 * 110.99945 * 94.50662 * 15 14 12 17 17 C 1.40197 * 107.85319 * 332.70911 * 15 14 12 18 18 C 1.39379 * 129.93123 * 197.94628 * 17 15 14 19 19 C 1.37918 * 120.23114 * 180.73757 * 18 17 15 20 20 C 1.38481 * 120.24112 * 359.97438 * 19 18 17 21 21 F 1.35095 * 120.08871 * 179.85687 * 20 19 18 22 22 C 1.38484 * 119.82832 * 359.87840 * 20 19 18 23 23 C 1.37944 * 120.06060 * 0.02562 * 22 20 19 24 24 H 1.08994 * 109.47198 * 293.85587 * 1 2 3 25 25 H 1.09006 * 109.46852 * 53.85792 * 1 2 3 26 26 H 1.09000 * 109.46857 * 173.84963 * 1 2 3 27 27 H 0.97001 * 120.00371 * 180.02562 * 7 6 4 28 28 H 1.09004 * 110.77971 * 262.18585 * 14 12 2 29 29 H 1.09001 * 110.78222 * 25.61541 * 14 12 2 30 30 H 1.08998 * 109.46677 * 300.18001 * 16 15 14 31 31 H 1.09000 * 109.46899 * 60.18550 * 16 15 14 32 32 H 1.09000 * 109.46957 * 180.18388 * 16 15 14 33 33 H 1.08004 * 119.87812 * 0.72824 * 18 17 15 34 34 H 1.08000 * 119.87871 * 180.02562 * 19 18 17 35 35 H 1.07993 * 119.96758 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9437 0.8302 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 1.3430 -2.1617 -4.4118 10 1 2.4868 -0.1414 -5.1122 11 1 3.6295 -1.7582 -3.7120 12 6 2.0399 -0.7212 1.2493 13 1 1.6561 -0.2452 2.1517 14 6 1.6582 -2.2188 1.2109 15 7 2.8329 -2.8680 1.8326 16 6 2.6187 -3.0777 3.2707 17 6 3.9475 -2.0487 1.6048 18 6 5.3070 -2.3464 1.6803 19 6 6.2469 -1.3696 1.4262 20 6 5.8467 -0.0862 1.0938 21 9 6.7700 0.8690 0.8483 22 6 4.4975 0.2156 1.0139 23 6 3.5552 -0.7598 1.2656 24 1 -0.3633 0.4156 0.9398 25 1 -0.3633 0.6061 -0.8300 26 1 -0.3633 -1.0218 -0.1101 27 1 0.7091 1.1614 -3.4844 28 1 0.7585 -2.4037 1.7978 29 1 1.5275 -2.5583 0.1834 30 1 2.4492 -2.1169 3.7566 31 1 1.7495 -3.7184 3.4189 32 1 3.4988 -3.5534 3.7035 33 1 5.6255 -3.3455 1.9389 34 1 7.2989 -1.6066 1.4860 35 1 4.1829 1.2158 0.7552 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261076012.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:01 Heat of formation + Delta-G solvation = -10.561156 kcal Electronic energy + Delta-G solvation = -18587.720325 eV Core-core repulsion = 15693.092045 eV Total energy + Delta-G solvation = -2894.628280 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.43607 -40.42127 -36.24793 -34.70553 -31.92885 -30.11547 -29.04269 -27.52135 -25.29098 -25.07869 -22.87936 -21.59931 -20.79082 -19.08558 -16.88196 -16.39809 -16.05802 -15.64809 -15.18325 -14.75977 -14.42043 -14.04889 -13.64025 -13.16399 -12.84233 -12.80969 -12.57980 -12.23835 -11.73959 -11.65537 -11.49010 -11.16689 -11.07730 -10.84583 -10.70078 -10.49429 -10.07893 -9.80345 -9.44729 -8.95748 -8.72974 -8.40901 -8.31767 -7.36204 -5.99371 -4.03652 1.57478 1.72457 3.31748 3.38939 3.44257 3.96392 4.12052 4.45517 4.67148 5.08348 5.25217 5.31804 5.35249 5.53402 5.55713 5.67577 5.74260 5.91308 5.97432 5.99112 6.24006 6.29146 6.52382 6.57308 6.61703 6.79999 6.84337 6.95035 7.05282 7.14017 7.26221 7.35283 7.64608 7.70409 7.89290 8.08673 8.40979 8.98757 9.61286 11.07226 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.017522 B = 0.009614 C = 0.007713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.621379 B = 2911.801614 C = 3629.349884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.058 3.942 3 H 0.028 0.972 4 C -0.505 4.505 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.891 5.891 8 Si 0.885 3.115 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 C -0.072 4.072 13 H 0.065 0.935 14 C 0.058 3.942 15 N -0.497 5.497 16 C 0.028 3.972 17 C 0.072 3.928 18 C -0.092 4.092 19 C -0.153 4.153 20 C 0.078 3.922 21 F -0.147 7.147 22 C -0.111 4.111 23 C -0.058 4.058 24 H 0.005 0.995 25 H 0.080 0.920 26 H 0.030 0.970 27 H 0.259 0.741 28 H 0.070 0.930 29 H 0.112 0.888 30 H 0.029 0.971 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.125 0.875 34 H 0.130 0.870 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.582 -4.666 10.003 11.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.039 3.961 3 H 0.046 0.954 4 C -0.543 4.543 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.530 5.530 8 Si 0.713 3.287 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.199 1.199 12 C -0.092 4.092 13 H 0.083 0.917 14 C -0.068 4.068 15 N -0.215 5.215 16 C -0.118 4.118 17 C -0.024 4.024 18 C -0.112 4.112 19 C -0.172 4.172 20 C 0.059 3.941 21 F -0.125 7.125 22 C -0.130 4.130 23 C -0.060 4.060 24 H 0.024 0.976 25 H 0.099 0.901 26 H 0.049 0.951 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.130 0.870 30 H 0.048 0.952 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.143 0.857 34 H 0.148 0.852 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.563 -5.068 9.666 11.830 hybrid contribution 0.370 0.488 -0.765 0.980 sum 4.934 -4.580 8.901 11.160 Atomic orbital electron populations 1.21812 0.98361 1.00105 0.99029 1.18604 0.92490 0.95367 0.89632 0.95375 1.21120 1.30759 1.12282 0.90149 0.92348 1.24912 0.95056 0.94895 0.98882 1.69889 1.36934 1.22882 1.23260 0.86688 0.79442 0.79495 0.83049 1.20713 1.21357 1.19879 1.21541 0.89205 0.97479 1.00940 0.91705 1.23394 0.90130 0.91502 1.01748 1.60346 1.02908 1.45949 1.12253 1.22435 1.02013 1.00237 0.87098 1.19632 0.91639 0.90875 1.00302 1.20134 0.89900 0.98875 1.02252 1.20676 1.00023 0.91708 1.04802 1.17467 0.86068 0.86295 1.04303 1.91444 1.65430 1.63347 1.92314 1.20322 0.90084 1.01128 1.01476 1.20849 0.96427 0.92314 0.96419 0.97585 0.90087 0.95076 0.93111 0.91142 0.87010 0.95226 0.91123 0.91651 0.85669 0.85183 0.84983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.62 37.16 0.32 -2.75 16 2 C 0.06 1.36 2.10 -91.77 -0.19 1.16 16 3 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 4 C -0.51 -13.18 6.90 -34.44 -0.24 -13.42 16 5 H 0.06 1.57 6.49 -52.48 -0.34 1.23 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -24.96 11.39 55.43 0.63 -24.33 16 8 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 11 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 12 C -0.07 -1.43 2.88 -90.50 -0.26 -1.69 16 13 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 14 C 0.06 1.06 5.43 -2.43 -0.01 1.05 16 15 N -0.50 -8.45 5.33 -176.81 -0.94 -9.39 16 16 C 0.03 0.38 9.29 60.06 0.56 0.94 16 17 C 0.07 1.29 5.59 -83.35 -0.47 0.82 16 18 C -0.09 -1.45 10.07 -39.27 -0.40 -1.85 16 19 C -0.15 -2.39 10.00 -39.61 -0.40 -2.79 16 20 C 0.08 1.39 7.31 -39.40 -0.29 1.11 16 21 F -0.15 -2.59 17.27 2.25 0.04 -2.55 16 22 C -0.11 -2.15 9.86 -39.60 -0.39 -2.54 16 23 C -0.06 -1.13 4.73 -104.04 -0.49 -1.62 16 24 H 0.01 0.10 8.14 -51.93 -0.42 -0.32 16 25 H 0.08 2.06 6.26 -51.93 -0.33 1.73 16 26 H 0.03 0.67 7.66 -51.93 -0.40 0.27 16 27 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.07 1.12 7.76 -51.93 -0.40 0.72 16 29 H 0.11 2.33 6.21 -51.93 -0.32 2.01 16 30 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.81 8.11 -51.93 -0.42 0.39 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 34 H 0.13 1.66 8.06 -52.49 -0.42 1.23 16 35 H 0.13 2.58 8.06 -52.49 -0.42 2.15 16 LS Contribution 288.62 15.07 4.35 4.35 Total: -1.00 -27.89 288.62 -8.02 -35.91 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -4.73 Total: -0.46 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: -2.35 Total: -19.94 kcal Atomic # 7 Polarization: -33.41 SS G_CDS: -0.31 Total: -33.72 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.04 Total: -2.55 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -27.89 -8.02 -35.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261076012.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.345 kcal (2) G-P(sol) polarization free energy of solvation -27.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds