Wall clock time and date at job start Mon Mar 30 2020 06:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.47205 * 2 1 4 4 C 1.50698 * 109.47398 * 240.00194 * 2 1 3 5 5 H 1.08006 * 119.99946 * 240.00387 * 4 2 1 6 6 C 1.37869 * 120.00249 * 59.99971 * 4 2 1 7 7 N 1.31509 * 120.00073 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00221 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47166 * 89.99625 * 8 6 4 10 10 H 1.48493 * 109.47500 * 209.99890 * 8 6 4 11 11 H 1.48502 * 109.46880 * 329.99972 * 8 6 4 12 12 C 1.53003 * 109.46949 * 119.99880 * 2 1 3 13 13 H 1.09001 * 110.65517 * 302.16465 * 12 2 1 14 14 C 1.54589 * 110.73576 * 65.55243 * 12 2 1 15 15 N 1.47912 * 102.63053 * 143.90080 * 14 12 2 16 16 C 1.46900 * 110.99945 * 94.50662 * 15 14 12 17 17 C 1.40197 * 107.85319 * 332.70911 * 15 14 12 18 18 C 1.39379 * 129.93123 * 197.94628 * 17 15 14 19 19 C 1.37918 * 120.23114 * 180.73757 * 18 17 15 20 20 C 1.38481 * 120.24112 * 359.97438 * 19 18 17 21 21 F 1.35095 * 120.08871 * 179.85687 * 20 19 18 22 22 C 1.38484 * 119.82832 * 359.87840 * 20 19 18 23 23 C 1.37944 * 120.06060 * 0.02562 * 22 20 19 24 24 H 1.08994 * 109.47198 * 293.85587 * 1 2 3 25 25 H 1.09006 * 109.46852 * 53.85792 * 1 2 3 26 26 H 1.09000 * 109.46857 * 173.84963 * 1 2 3 27 27 H 0.97001 * 120.00371 * 180.02562 * 7 6 4 28 28 H 1.09004 * 110.77971 * 262.18585 * 14 12 2 29 29 H 1.09001 * 110.78222 * 25.61541 * 14 12 2 30 30 H 1.08998 * 109.46677 * 300.18001 * 16 15 14 31 31 H 1.09000 * 109.46899 * 60.18550 * 16 15 14 32 32 H 1.09000 * 109.46957 * 180.18388 * 16 15 14 33 33 H 1.08004 * 119.87812 * 0.72824 * 18 17 15 34 34 H 1.08000 * 119.87871 * 180.02562 * 19 18 17 35 35 H 1.07993 * 119.96758 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9437 0.8302 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 1.3430 -2.1617 -4.4118 10 1 2.4868 -0.1414 -5.1122 11 1 3.6295 -1.7582 -3.7120 12 6 2.0399 -0.7212 1.2493 13 1 1.6561 -0.2452 2.1517 14 6 1.6582 -2.2188 1.2109 15 7 2.8329 -2.8680 1.8326 16 6 2.6187 -3.0777 3.2707 17 6 3.9475 -2.0487 1.6048 18 6 5.3070 -2.3464 1.6803 19 6 6.2469 -1.3696 1.4262 20 6 5.8467 -0.0862 1.0938 21 9 6.7700 0.8690 0.8483 22 6 4.4975 0.2156 1.0139 23 6 3.5552 -0.7598 1.2656 24 1 -0.3633 0.4156 0.9398 25 1 -0.3633 0.6061 -0.8300 26 1 -0.3633 -1.0218 -0.1101 27 1 0.7091 1.1614 -3.4844 28 1 0.7585 -2.4037 1.7978 29 1 1.5275 -2.5583 0.1834 30 1 2.4492 -2.1169 3.7566 31 1 1.7495 -3.7184 3.4189 32 1 3.4988 -3.5534 3.7035 33 1 5.6255 -3.3455 1.9389 34 1 7.2989 -1.6066 1.4860 35 1 4.1829 1.2158 0.7552 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261076012.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:01 Heat of formation + Delta-G solvation = -25.563190 kcal Electronic energy + Delta-G solvation = -18588.370862 eV Core-core repulsion = 15693.092045 eV Total energy + Delta-G solvation = -2895.278817 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.81900 -41.80814 -37.64454 -36.40890 -33.73242 -31.69213 -30.35033 -28.99123 -27.15515 -26.57613 -24.27277 -23.19104 -22.13200 -20.79862 -18.47612 -17.90788 -17.48200 -17.22095 -16.66399 -16.47621 -15.88300 -15.51689 -15.07286 -14.66354 -14.50150 -14.13211 -13.86972 -13.78248 -13.35141 -13.13109 -12.97648 -12.85764 -12.61666 -12.53997 -12.46377 -12.14855 -11.99602 -11.45920 -11.19295 -10.76463 -10.46678 -10.15196 -9.79952 -8.71022 -8.06816 -6.15373 0.21150 0.37114 1.37693 1.40327 1.48854 2.43713 2.61709 2.80471 3.22935 3.31224 3.73573 3.90802 4.11514 4.21367 4.29101 4.37304 4.52369 4.63322 4.68624 4.81245 4.89262 4.95338 4.99278 5.01650 5.17134 5.20948 5.24932 5.35506 5.41230 5.57149 5.65078 5.75086 5.92176 6.04655 6.14440 6.34152 6.39916 6.93164 7.51100 8.98663 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.017522 B = 0.009614 C = 0.007713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.621379 B = 2911.801614 C = 3629.349884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.058 3.942 3 H -0.008 1.008 4 C -0.500 4.500 5 H 0.049 0.951 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.937 3.063 9 H -0.273 1.273 10 H -0.288 1.288 11 H -0.276 1.276 12 C -0.069 4.069 13 H 0.076 0.924 14 C 0.065 3.935 15 N -0.500 5.500 16 C 0.027 3.973 17 C 0.066 3.934 18 C -0.086 4.086 19 C -0.137 4.137 20 C 0.064 3.936 21 F -0.149 7.149 22 C -0.133 4.133 23 C -0.087 4.087 24 H 0.030 0.970 25 H 0.050 0.950 26 H 0.036 0.964 27 H 0.257 0.743 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.028 0.972 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.160 0.840 34 H 0.167 0.833 35 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.585 -6.897 11.306 14.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.040 3.960 3 H 0.010 0.990 4 C -0.538 4.538 5 H 0.067 0.933 6 C -0.183 4.183 7 N -0.558 5.558 8 Si 0.765 3.235 9 H -0.199 1.199 10 H -0.214 1.214 11 H -0.201 1.201 12 C -0.088 4.088 13 H 0.094 0.906 14 C -0.061 4.061 15 N -0.217 5.217 16 C -0.119 4.119 17 C -0.030 4.030 18 C -0.105 4.105 19 C -0.156 4.156 20 C 0.044 3.956 21 F -0.128 7.128 22 C -0.153 4.153 23 C -0.090 4.090 24 H 0.049 0.951 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.114 0.886 29 H 0.100 0.900 30 H 0.047 0.953 31 H 0.109 0.891 32 H 0.103 0.897 33 H 0.178 0.822 34 H 0.184 0.816 35 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.565 -7.311 10.981 14.318 hybrid contribution 0.102 1.180 -1.114 1.626 sum 5.668 -6.131 9.867 12.925 Atomic orbital electron populations 1.21645 0.97677 0.99954 0.99055 1.18486 0.93000 0.93608 0.90941 0.98975 1.21298 1.29745 1.11610 0.91154 0.93259 1.25568 0.95657 0.95685 1.01397 1.70013 1.38225 1.24101 1.23498 0.85862 0.78824 0.78593 0.80270 1.19877 1.21419 1.20130 1.21402 0.89884 0.98296 0.99197 0.90594 1.23210 0.91895 0.90104 1.00934 1.60361 1.01918 1.44925 1.14532 1.22577 1.03917 1.00789 0.84583 1.19942 0.92961 0.90143 0.99999 1.20531 0.88780 1.00378 1.00848 1.21073 1.01940 0.90220 1.02369 1.17643 0.85404 0.87383 1.05151 1.91432 1.65249 1.63694 1.92437 1.20345 0.91381 1.00586 1.02944 1.20918 0.96170 0.93469 0.98443 0.95101 0.93137 0.94471 0.93342 0.88602 0.89977 0.95329 0.89127 0.89734 0.82199 0.81564 0.86937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.75 8.62 71.98 0.62 -5.13 16 2 C 0.06 2.81 2.10 -11.54 -0.02 2.79 16 3 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 4 C -0.50 -26.62 6.90 25.60 0.18 -26.44 16 5 H 0.05 2.68 6.49 -2.91 -0.02 2.66 16 6 C 0.02 0.83 5.30 84.65 0.45 1.28 16 7 N -0.92 -52.91 11.39 21.44 0.24 -52.67 16 8 Si 0.94 44.50 29.54 68.60 2.03 46.52 16 9 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 10 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 12 C -0.07 -2.70 2.88 -10.72 -0.03 -2.73 16 13 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 14 C 0.06 2.28 5.43 86.65 0.47 2.75 16 15 N -0.50 -15.68 5.33 -713.31 -3.80 -19.49 16 16 C 0.03 0.61 9.29 127.69 1.19 1.80 16 17 C 0.07 2.23 5.59 38.24 0.21 2.44 16 18 C -0.09 -2.41 10.07 22.47 0.23 -2.18 16 19 C -0.14 -3.86 10.00 22.25 0.22 -3.64 16 20 C 0.06 2.22 7.31 22.39 0.16 2.38 16 21 F -0.15 -5.19 17.27 44.97 0.78 -4.42 16 22 C -0.13 -5.27 9.86 22.26 0.22 -5.05 16 23 C -0.09 -3.41 4.73 -19.49 -0.09 -3.50 16 24 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.05 2.62 6.26 -2.38 -0.01 2.61 16 26 H 0.04 1.61 7.66 -2.39 -0.02 1.59 16 27 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 28 H 0.10 2.82 7.76 -2.38 -0.02 2.80 16 29 H 0.08 3.38 6.21 -2.39 -0.01 3.37 16 30 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.09 1.72 8.11 -2.39 -0.02 1.70 16 32 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.16 3.40 8.06 -2.91 -0.02 3.37 16 34 H 0.17 3.46 8.06 -2.91 -0.02 3.44 16 35 H 0.11 4.72 8.06 -2.91 -0.02 4.69 16 Total: -1.00 -61.04 288.62 4.12 -56.92 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: 1.08 Total: 8.37 kcal Atomic # 6 Polarization: -39.03 SS G_CDS: 3.80 Total: -35.23 kcal Atomic # 7 Polarization: -68.60 SS G_CDS: -3.56 Total: -72.16 kcal Atomic # 9 Polarization: -5.19 SS G_CDS: 0.78 Total: -4.42 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -61.04 4.12 -56.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261076012.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.352 kcal (2) G-P(sol) polarization free energy of solvation -61.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds