Wall clock time and date at job start Mon Mar 30 2020 06:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09002 * 109.46814 * 2 1 4 4 C 1.50701 * 109.46881 * 119.99781 * 2 1 3 5 5 H 1.07996 * 120.00045 * 120.00354 * 4 2 1 6 6 C 1.37873 * 120.00129 * 299.99872 * 4 2 1 7 7 N 1.31516 * 119.99974 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00271 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46784 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47455 * 119.99736 * 8 6 4 11 11 H 1.48498 * 109.47320 * 240.00108 * 8 6 4 12 12 C 1.52999 * 109.47088 * 239.99656 * 2 1 3 13 13 H 1.09006 * 110.79123 * 57.74647 * 12 2 1 14 14 C 1.54590 * 110.73676 * 294.46926 * 12 2 1 15 15 N 1.47910 * 102.62289 * 216.10144 * 14 12 2 16 16 C 1.46904 * 111.00038 * 149.09923 * 15 14 12 17 17 C 1.40196 * 107.85910 * 27.29930 * 15 14 12 18 18 C 1.39370 * 129.93198 * 162.00193 * 17 15 14 19 19 C 1.37924 * 120.22711 * 179.36202 * 18 17 15 20 20 C 1.38478 * 120.24016 * 0.02562 * 19 18 17 21 21 F 1.35101 * 120.08684 * 180.02562 * 20 19 18 22 22 C 1.38481 * 119.83279 * 0.33255 * 20 19 18 23 23 C 1.37950 * 120.05739 * 359.51762 * 22 20 19 24 24 H 1.09000 * 109.47034 * 186.15378 * 1 2 3 25 25 H 1.08998 * 109.46739 * 306.15273 * 1 2 3 26 26 H 1.09001 * 109.47110 * 66.15074 * 1 2 3 27 27 H 0.97005 * 120.00343 * 179.97438 * 7 6 4 28 28 H 1.09007 * 110.77916 * 334.37935 * 14 12 2 29 29 H 1.08998 * 110.78630 * 97.62722 * 14 12 2 30 30 H 1.09004 * 109.46908 * 299.93102 * 16 15 14 31 31 H 1.09003 * 109.47527 * 59.92614 * 16 15 14 32 32 H 1.09003 * 109.47520 * 179.97438 * 16 15 14 33 33 H 1.07995 * 119.88540 * 359.34502 * 18 17 15 34 34 H 1.08009 * 119.87983 * 179.97438 * 19 18 17 35 35 H 1.07994 * 119.97075 * 179.74815 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3225 -1.1194 4.0080 9 1 3.1473 -2.2862 3.6039 10 1 3.1473 -0.1856 4.8161 11 1 1.1678 -1.5864 4.8166 12 6 2.0401 -0.7213 -1.2492 13 1 1.6563 -0.2481 -2.1531 14 6 1.6579 -2.2188 -1.2109 15 7 2.8326 -2.8681 -1.8324 16 6 3.0449 -4.2124 -1.2795 17 6 3.9474 -2.0492 -1.6041 18 6 5.3068 -2.3475 -1.6784 19 6 6.2469 -1.3714 -1.4221 20 6 5.8469 -0.0883 -1.0886 21 9 6.7704 0.8656 -0.8386 22 6 4.4978 0.2131 -1.0057 23 6 3.5552 -0.7603 -1.2646 24 1 -0.3633 -1.0218 0.1102 25 1 -0.3633 0.6063 0.8298 26 1 -0.3633 0.4155 -0.9399 27 1 0.7090 1.1616 3.4844 28 1 1.5270 -2.5583 -0.1834 29 1 0.7565 -2.4030 -1.7953 30 1 3.2141 -4.1408 -0.2050 31 1 2.1642 -4.8263 -1.4684 32 1 3.9144 -4.6674 -1.7540 33 1 5.6251 -3.3465 -1.9374 34 1 7.2989 -1.6089 -1.4809 35 1 4.1834 1.2120 -0.7418 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261076016.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:05 Heat of formation + Delta-G solvation = -14.390792 kcal Electronic energy + Delta-G solvation = -18620.931327 eV Core-core repulsion = 15726.136982 eV Total energy + Delta-G solvation = -2894.794346 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.36309 -40.33759 -36.16029 -34.81349 -32.12836 -30.11409 -29.05604 -27.66190 -25.28474 -24.89039 -22.85758 -21.53508 -20.77825 -19.12811 -16.87492 -16.36165 -16.03392 -15.64226 -15.18023 -14.85952 -14.38095 -14.09687 -13.76190 -13.14159 -12.78450 -12.63616 -12.50779 -12.24561 -12.03396 -11.49835 -11.36572 -11.29297 -10.96240 -10.83918 -10.70794 -10.55925 -10.14317 -9.81884 -9.45703 -9.26472 -8.81146 -8.38825 -8.35630 -7.17458 -6.03334 -4.07956 1.65518 1.75490 3.25763 3.34806 3.37584 3.91103 4.32707 4.40160 4.71952 5.02224 5.23112 5.29813 5.32105 5.52508 5.64076 5.65649 5.79932 5.95653 5.99925 6.05410 6.27426 6.30866 6.53725 6.58654 6.61755 6.65302 6.85262 6.89085 7.04634 7.16269 7.26343 7.37678 7.61809 7.67423 7.88457 8.06373 8.37431 8.93445 9.56624 11.03137 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.017236 B = 0.009574 C = 0.008186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.121634 B = 2923.953854 C = 3419.549349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.052 3.948 3 H 0.031 0.969 4 C -0.504 4.504 5 H 0.053 0.947 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.883 3.117 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.285 1.285 12 C -0.048 4.048 13 H 0.073 0.927 14 C 0.052 3.948 15 N -0.483 5.483 16 C 0.018 3.982 17 C 0.079 3.921 18 C -0.120 4.120 19 C -0.142 4.142 20 C 0.064 3.936 21 F -0.148 7.148 22 C -0.101 4.101 23 C -0.059 4.059 24 H 0.029 0.971 25 H 0.080 0.920 26 H 0.008 0.992 27 H 0.259 0.741 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.040 0.960 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.122 0.878 34 H 0.128 0.872 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.746 -5.892 -7.566 10.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.033 3.967 3 H 0.049 0.951 4 C -0.542 4.542 5 H 0.071 0.929 6 C -0.137 4.137 7 N -0.527 5.527 8 Si 0.712 3.288 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.211 1.211 12 C -0.067 4.067 13 H 0.091 0.909 14 C -0.073 4.073 15 N -0.197 5.197 16 C -0.128 4.128 17 C -0.019 4.019 18 C -0.141 4.141 19 C -0.161 4.161 20 C 0.044 3.956 21 F -0.127 7.127 22 C -0.121 4.121 23 C -0.062 4.062 24 H 0.048 0.952 25 H 0.098 0.902 26 H 0.027 0.973 27 H 0.069 0.931 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.059 0.941 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.140 0.860 34 H 0.146 0.854 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.530 -5.891 -7.960 10.890 hybrid contribution 0.636 -0.258 1.759 1.888 sum 5.166 -6.149 -6.201 10.146 Atomic orbital electron populations 1.21803 0.98322 1.00011 0.99154 1.18691 0.92587 0.95615 0.89759 0.95095 1.21090 1.30677 1.12178 0.90303 0.92877 1.24907 0.95051 0.94923 0.98808 1.69897 1.36786 1.22799 1.23178 0.86666 0.78665 0.79865 0.83642 1.19945 1.21001 1.21075 1.21201 0.89055 0.95576 1.00841 0.90885 1.23448 0.91156 0.93281 0.99441 1.60691 1.02704 1.03031 1.53256 1.22500 1.02158 0.89748 0.98442 1.19736 0.91022 0.93766 0.97408 1.20084 0.89935 0.99195 1.04854 1.20623 0.99841 0.91677 1.04009 1.17398 0.86068 0.86368 1.05721 1.91437 1.65427 1.63419 1.92418 1.20302 0.90020 1.00923 1.00835 1.20354 0.96413 0.92561 0.96825 0.95215 0.90152 0.97344 0.93101 0.89676 0.90121 0.94147 0.91035 0.91502 0.86029 0.85357 0.84899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.62 37.16 0.32 -2.73 16 2 C 0.05 1.22 2.09 -91.77 -0.19 1.02 16 3 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 4 C -0.50 -12.97 6.90 -34.44 -0.24 -13.20 16 5 H 0.05 1.39 6.49 -52.49 -0.34 1.05 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -24.63 11.39 55.43 0.63 -24.00 16 8 Si 0.88 21.07 29.54 -169.99 -5.02 16.05 16 9 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 C -0.05 -0.96 2.94 -90.51 -0.27 -1.23 16 13 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 14 C 0.05 0.94 5.34 -2.43 -0.01 0.93 16 15 N -0.48 -8.21 5.31 -176.81 -0.94 -9.15 16 16 C 0.02 0.26 9.16 60.07 0.55 0.81 16 17 C 0.08 1.43 5.96 -83.35 -0.50 0.93 16 18 C -0.12 -1.90 9.53 -39.28 -0.37 -2.28 16 19 C -0.14 -2.25 10.00 -39.61 -0.40 -2.65 16 20 C 0.06 1.16 7.31 -39.40 -0.29 0.87 16 21 F -0.15 -2.65 17.27 2.25 0.04 -2.61 16 22 C -0.10 -1.98 9.86 -39.60 -0.39 -2.37 16 23 C -0.06 -1.16 4.73 -104.04 -0.49 -1.66 16 24 H 0.03 0.64 7.66 -51.93 -0.40 0.24 16 25 H 0.08 2.03 6.26 -51.93 -0.33 1.70 16 26 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 27 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 28 H 0.09 1.71 5.91 -51.93 -0.31 1.40 16 29 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.04 0.62 8.09 -51.93 -0.42 0.20 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.81 7.32 -51.93 -0.38 0.43 16 33 H 0.12 1.59 7.38 -52.49 -0.39 1.21 16 34 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 35 H 0.13 2.59 8.06 -52.49 -0.42 2.17 16 LS Contribution 286.83 15.07 4.32 4.32 Total: -1.00 -27.55 286.83 -7.99 -35.55 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -4.65 Total: -0.26 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: -2.37 Total: -19.90 kcal Atomic # 7 Polarization: -32.84 SS G_CDS: -0.31 Total: -33.15 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.04 Total: -2.61 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -27.55 -7.99 -35.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261076016.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.155 kcal (2) G-P(sol) polarization free energy of solvation -27.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds