Wall clock time and date at job start Mon Mar 30 2020 06:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09002 * 109.46814 * 2 1 4 4 C 1.50701 * 109.46881 * 119.99781 * 2 1 3 5 5 H 1.07996 * 120.00045 * 120.00354 * 4 2 1 6 6 C 1.37873 * 120.00129 * 299.99872 * 4 2 1 7 7 N 1.31516 * 119.99974 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00271 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46784 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47455 * 119.99736 * 8 6 4 11 11 H 1.48498 * 109.47320 * 240.00108 * 8 6 4 12 12 C 1.52999 * 109.47088 * 239.99656 * 2 1 3 13 13 H 1.09006 * 110.79123 * 57.74647 * 12 2 1 14 14 C 1.54590 * 110.73676 * 294.46926 * 12 2 1 15 15 N 1.47910 * 102.62289 * 216.10144 * 14 12 2 16 16 C 1.46904 * 111.00038 * 149.09923 * 15 14 12 17 17 C 1.40196 * 107.85910 * 27.29930 * 15 14 12 18 18 C 1.39370 * 129.93198 * 162.00193 * 17 15 14 19 19 C 1.37924 * 120.22711 * 179.36202 * 18 17 15 20 20 C 1.38478 * 120.24016 * 0.02562 * 19 18 17 21 21 F 1.35101 * 120.08684 * 180.02562 * 20 19 18 22 22 C 1.38481 * 119.83279 * 0.33255 * 20 19 18 23 23 C 1.37950 * 120.05739 * 359.51762 * 22 20 19 24 24 H 1.09000 * 109.47034 * 186.15378 * 1 2 3 25 25 H 1.08998 * 109.46739 * 306.15273 * 1 2 3 26 26 H 1.09001 * 109.47110 * 66.15074 * 1 2 3 27 27 H 0.97005 * 120.00343 * 179.97438 * 7 6 4 28 28 H 1.09007 * 110.77916 * 334.37935 * 14 12 2 29 29 H 1.08998 * 110.78630 * 97.62722 * 14 12 2 30 30 H 1.09004 * 109.46908 * 299.93102 * 16 15 14 31 31 H 1.09003 * 109.47527 * 59.92614 * 16 15 14 32 32 H 1.09003 * 109.47520 * 179.97438 * 16 15 14 33 33 H 1.07995 * 119.88540 * 359.34502 * 18 17 15 34 34 H 1.08009 * 119.87983 * 179.97438 * 19 18 17 35 35 H 1.07994 * 119.97075 * 179.74815 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3225 -1.1194 4.0080 9 1 3.1473 -2.2862 3.6039 10 1 3.1473 -0.1856 4.8161 11 1 1.1678 -1.5864 4.8166 12 6 2.0401 -0.7213 -1.2492 13 1 1.6563 -0.2481 -2.1531 14 6 1.6579 -2.2188 -1.2109 15 7 2.8326 -2.8681 -1.8324 16 6 3.0449 -4.2124 -1.2795 17 6 3.9474 -2.0492 -1.6041 18 6 5.3068 -2.3475 -1.6784 19 6 6.2469 -1.3714 -1.4221 20 6 5.8469 -0.0883 -1.0886 21 9 6.7704 0.8656 -0.8386 22 6 4.4978 0.2131 -1.0057 23 6 3.5552 -0.7603 -1.2646 24 1 -0.3633 -1.0218 0.1102 25 1 -0.3633 0.6063 0.8298 26 1 -0.3633 0.4155 -0.9399 27 1 0.7090 1.1616 3.4844 28 1 1.5270 -2.5583 -0.1834 29 1 0.7565 -2.4030 -1.7953 30 1 3.2141 -4.1408 -0.2050 31 1 2.1642 -4.8263 -1.4684 32 1 3.9144 -4.6674 -1.7540 33 1 5.6251 -3.3465 -1.9374 34 1 7.2989 -1.6089 -1.4809 35 1 4.1834 1.2120 -0.7418 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261076016.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:05 Heat of formation + Delta-G solvation = -29.033057 kcal Electronic energy + Delta-G solvation = -18621.566264 eV Core-core repulsion = 15726.136982 eV Total energy + Delta-G solvation = -2895.429282 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.76237 -41.73588 -37.57898 -36.47780 -33.91180 -31.72954 -30.39386 -29.12772 -27.20071 -26.35616 -24.28702 -23.08059 -22.13567 -20.85206 -18.49049 -17.88162 -17.47713 -17.16331 -16.72901 -16.45155 -15.99756 -15.47898 -15.19316 -14.68465 -14.46438 -14.11543 -13.83797 -13.65771 -13.40656 -13.30858 -12.97710 -12.80559 -12.63404 -12.55813 -12.28892 -12.17179 -12.02567 -11.47785 -11.21667 -10.73793 -10.62867 -10.42126 -9.77971 -8.54809 -8.07865 -6.16831 0.27237 0.39290 1.34734 1.38898 1.46786 2.41442 2.55643 2.98152 3.21873 3.34430 3.70093 3.83553 4.07025 4.25661 4.32970 4.39978 4.46594 4.63867 4.66257 4.87230 4.92783 4.93436 4.95966 5.01058 5.10857 5.20042 5.24036 5.27821 5.40312 5.53979 5.63346 5.73085 5.92301 6.04508 6.14406 6.30004 6.38219 6.91448 7.49399 8.97760 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.017236 B = 0.009574 C = 0.008186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.121634 B = 2923.953854 C = 3419.549349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.054 3.946 3 H -0.005 1.005 4 C -0.498 4.498 5 H 0.047 0.953 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.936 3.064 9 H -0.270 1.270 10 H -0.288 1.288 11 H -0.279 1.279 12 C -0.047 4.047 13 H 0.080 0.920 14 C 0.060 3.940 15 N -0.480 5.480 16 C 0.016 3.984 17 C 0.071 3.929 18 C -0.111 4.111 19 C -0.128 4.128 20 C 0.050 3.950 21 F -0.151 7.151 22 C -0.123 4.123 23 C -0.089 4.089 24 H 0.035 0.965 25 H 0.050 0.950 26 H 0.031 0.969 27 H 0.258 0.742 28 H 0.064 0.936 29 H 0.101 0.899 30 H 0.025 0.975 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.160 0.840 34 H 0.165 0.835 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.920 -8.371 -8.537 13.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.035 3.965 3 H 0.013 0.987 4 C -0.537 4.537 5 H 0.065 0.935 6 C -0.183 4.183 7 N -0.557 5.557 8 Si 0.763 3.237 9 H -0.195 1.195 10 H -0.214 1.214 11 H -0.205 1.205 12 C -0.066 4.066 13 H 0.099 0.901 14 C -0.066 4.066 15 N -0.194 5.194 16 C -0.130 4.130 17 C -0.028 4.028 18 C -0.132 4.132 19 C -0.147 4.147 20 C 0.030 3.970 21 F -0.130 7.130 22 C -0.143 4.143 23 C -0.092 4.092 24 H 0.054 0.946 25 H 0.069 0.931 26 H 0.050 0.950 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.119 0.881 30 H 0.043 0.957 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.177 0.823 34 H 0.183 0.817 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 5.706 -8.384 -8.936 13.517 hybrid contribution 0.316 0.522 2.009 2.100 sum 6.022 -7.862 -6.927 12.086 Atomic orbital electron populations 1.21645 0.97696 0.99893 0.99118 1.18575 0.93042 0.93888 0.91007 0.98652 1.21275 1.29657 1.11574 0.91157 0.93480 1.25568 0.95638 0.95703 1.01363 1.70023 1.38124 1.24083 1.23459 0.85829 0.78194 0.78837 0.80793 1.19490 1.21428 1.20528 1.21082 0.89774 0.96619 0.99120 0.90149 1.23319 0.92651 0.91867 0.98769 1.60745 1.01791 1.03923 1.52914 1.22644 1.04376 0.88407 0.97608 1.20031 0.92385 0.93109 0.97228 1.20511 0.88736 1.00816 1.03116 1.21033 1.01802 0.90219 1.01694 1.17587 0.85420 0.87468 1.06547 1.91425 1.65256 1.63780 1.92536 1.20326 0.91280 1.00444 1.02248 1.20417 0.96150 0.93799 0.98834 0.94557 0.93139 0.95025 0.93314 0.91799 0.88092 0.95658 0.89109 0.88885 0.82251 0.81736 0.86767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.74 8.62 71.99 0.62 -5.11 16 2 C 0.05 2.57 2.09 -11.54 -0.02 2.54 16 3 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 4 C -0.50 -26.04 6.90 25.60 0.18 -25.87 16 5 H 0.05 2.48 6.49 -2.91 -0.02 2.46 16 6 C 0.02 0.84 5.30 84.65 0.45 1.29 16 7 N -0.92 -52.28 11.39 21.45 0.24 -52.04 16 8 Si 0.94 43.60 29.54 68.60 2.03 45.62 16 9 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 10 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 12 C -0.05 -1.89 2.94 -10.72 -0.03 -1.92 16 13 H 0.08 3.01 8.14 -2.38 -0.02 2.99 16 14 C 0.06 2.08 5.34 86.65 0.46 2.54 16 15 N -0.48 -15.05 5.31 -713.29 -3.79 -18.84 16 16 C 0.02 0.39 9.16 127.69 1.17 1.56 16 17 C 0.07 2.41 5.96 38.24 0.23 2.64 16 18 C -0.11 -3.11 9.53 22.47 0.21 -2.90 16 19 C -0.13 -3.66 10.00 22.25 0.22 -3.43 16 20 C 0.05 1.75 7.31 22.38 0.16 1.91 16 21 F -0.15 -5.31 17.27 44.97 0.78 -4.54 16 22 C -0.12 -4.92 9.86 22.26 0.22 -4.70 16 23 C -0.09 -3.51 4.73 -19.49 -0.09 -3.61 16 24 H 0.04 1.56 7.66 -2.39 -0.02 1.54 16 25 H 0.05 2.61 6.26 -2.39 -0.01 2.59 16 26 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.26 14.13 8.31 -92.70 -0.77 13.36 16 28 H 0.06 2.51 5.91 -2.38 -0.01 2.50 16 29 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 30 H 0.02 0.70 8.09 -2.39 -0.02 0.68 16 31 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.09 1.82 7.32 -2.39 -0.02 1.80 16 33 H 0.16 3.26 7.38 -2.91 -0.02 3.24 16 34 H 0.17 3.47 8.06 -2.91 -0.02 3.45 16 35 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 Total: -1.00 -60.03 286.83 4.12 -55.91 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: 1.08 Total: 8.93 kcal Atomic # 6 Polarization: -38.83 SS G_CDS: 3.78 Total: -35.05 kcal Atomic # 7 Polarization: -67.33 SS G_CDS: -3.55 Total: -70.88 kcal Atomic # 9 Polarization: -5.31 SS G_CDS: 0.78 Total: -4.54 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -60.03 4.12 -55.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261076016.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.880 kcal (2) G-P(sol) polarization free energy of solvation -60.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds