Wall clock time and date at job start Mon Mar 30 2020 06:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47155 * 89.99872 * 8 6 4 10 10 H 1.48499 * 109.47102 * 210.00327 * 8 6 4 11 11 H 1.48499 * 109.46909 * 330.00049 * 8 6 4 12 12 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 13 13 H 1.08996 * 110.65371 * 296.80327 * 12 2 1 14 14 C 1.54591 * 110.73855 * 59.99959 * 12 2 1 15 15 N 1.47894 * 102.63708 * 92.71603 * 14 12 2 16 16 C 1.46904 * 111.00171 * 148.98118 * 15 14 12 17 17 C 1.40200 * 107.88674 * 27.16580 * 15 14 12 18 18 C 1.39377 * 129.92538 * 161.91980 * 17 15 14 19 19 C 1.37917 * 120.23083 * 179.70610 * 18 17 15 20 20 C 1.38477 * 120.24282 * 359.97438 * 19 18 17 21 21 F 1.35094 * 120.09054 * 180.17430 * 20 19 18 22 22 C 1.38489 * 119.82830 * 0.15129 * 20 19 18 23 23 C 1.37944 * 120.05789 * 359.97438 * 22 20 19 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 28 28 H 1.09004 * 110.77427 * 210.99979 * 14 12 2 29 29 H 1.08999 * 110.77805 * 334.23611 * 14 12 2 30 30 H 1.08992 * 109.46851 * 60.00207 * 16 15 14 31 31 H 1.09009 * 109.46854 * 180.02562 * 16 15 14 32 32 H 1.08994 * 109.47423 * 299.99859 * 16 15 14 33 33 H 1.07997 * 119.87867 * 359.72213 * 18 17 15 34 34 H 1.08005 * 119.87826 * 180.02562 * 19 18 17 35 35 H 1.07998 * 119.96822 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3432 -0.9495 5.1120 11 1 2.4860 -2.5663 3.7118 12 6 2.0400 -0.7212 -1.2494 13 1 1.7345 -1.7674 -1.2409 14 6 1.5409 -0.0153 -2.5310 15 7 2.6462 0.9184 -2.8374 16 6 2.7644 1.1373 -4.2852 17 6 3.8273 0.3743 -2.3135 18 6 5.1567 0.6703 -2.6094 19 6 6.1769 0.0072 -1.9601 20 6 5.8878 -0.9570 -1.0091 21 9 6.8896 -1.6021 -0.3724 22 6 4.5691 -1.2579 -0.7120 23 6 3.5466 -0.5982 -1.3617 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 0.7096 1.1617 3.4844 28 1 1.4057 -0.7331 -3.3400 29 1 0.6151 0.5268 -2.3383 30 1 1.8345 1.5595 -4.6659 31 1 3.5849 1.8273 -4.4825 32 1 2.9620 0.1871 -4.7814 33 1 5.3887 1.4217 -3.3496 34 1 7.2051 0.2413 -2.1936 35 1 4.3410 -2.0092 0.0295 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261076020.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:09 Heat of formation + Delta-G solvation = -28.148223 kcal Electronic energy + Delta-G solvation = -18454.014081 eV Core-core repulsion = 15558.623168 eV Total energy + Delta-G solvation = -2895.390913 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.76127 -41.74664 -37.57258 -36.46624 -33.91727 -31.75903 -30.38331 -29.24811 -27.21793 -26.27374 -24.36705 -22.98904 -22.11350 -20.81454 -18.43307 -18.06697 -17.51640 -17.18047 -16.85087 -16.46011 -15.99871 -15.50529 -15.04116 -14.69005 -14.55236 -14.08110 -13.84117 -13.58700 -13.46681 -13.20749 -12.99428 -12.88939 -12.57448 -12.43558 -12.31651 -12.21018 -12.03079 -11.45614 -11.19204 -10.78511 -10.58357 -10.42271 -9.77460 -8.52040 -8.06346 -6.17324 0.27443 0.38319 1.37300 1.39469 1.47510 2.42534 2.60407 2.86145 3.22258 3.35002 3.69594 3.85477 4.06373 4.20276 4.28260 4.36574 4.45056 4.60826 4.66348 4.74065 4.88379 4.92435 4.97596 5.03666 5.11842 5.20253 5.26115 5.35016 5.40926 5.50814 5.65024 5.75167 6.02111 6.06427 6.17631 6.32110 6.41017 6.92863 7.49389 8.98419 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.018173 B = 0.009572 C = 0.006725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.352127 B = 2924.628152 C = 4162.817294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.066 3.934 3 H -0.008 1.008 4 C -0.516 4.516 5 H 0.052 0.948 6 C 0.013 3.987 7 N -0.917 5.917 8 Si 0.940 3.060 9 H -0.283 1.283 10 H -0.282 1.282 11 H -0.267 1.267 12 C -0.047 4.047 13 H 0.074 0.926 14 C 0.051 3.949 15 N -0.489 5.489 16 C 0.016 3.984 17 C 0.076 3.924 18 C -0.113 4.113 19 C -0.125 4.125 20 C 0.045 3.955 21 F -0.151 7.151 22 C -0.120 4.120 23 C -0.100 4.100 24 H 0.052 0.948 25 H 0.030 0.970 26 H 0.039 0.961 27 H 0.258 0.742 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.045 0.955 33 H 0.160 0.840 34 H 0.165 0.835 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.517 -1.074 -13.923 15.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.047 3.953 3 H 0.010 0.990 4 C -0.554 4.554 5 H 0.070 0.930 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.766 3.234 9 H -0.210 1.210 10 H -0.208 1.208 11 H -0.192 1.192 12 C -0.066 4.066 13 H 0.092 0.908 14 C -0.074 4.074 15 N -0.203 5.203 16 C -0.129 4.129 17 C -0.023 4.023 18 C -0.134 4.134 19 C -0.144 4.144 20 C 0.025 3.975 21 F -0.130 7.130 22 C -0.140 4.140 23 C -0.103 4.103 24 H 0.071 0.929 25 H 0.049 0.951 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.095 0.905 29 H 0.116 0.884 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.063 0.937 33 H 0.178 0.822 34 H 0.183 0.817 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 5.269 -0.461 -13.609 14.601 hybrid contribution 0.414 -1.118 1.388 1.830 sum 5.682 -1.579 -12.222 13.570 Atomic orbital electron populations 1.21722 0.97802 0.99106 1.00083 1.18416 0.92757 0.93645 0.90432 0.99022 1.21494 1.30198 1.12026 0.91679 0.92974 1.25616 0.95596 0.95770 1.01509 1.70013 1.38043 1.24164 1.23525 0.85833 0.77930 0.79433 0.80181 1.20977 1.20797 1.19185 1.21062 0.89549 0.99948 0.96000 0.90768 1.23437 0.94383 0.93457 0.96171 1.60524 1.01735 1.42566 1.15464 1.22674 1.04500 1.01787 0.83949 1.20043 0.91947 0.93157 0.97124 1.20500 0.88351 1.01996 1.02578 1.21038 1.01560 0.95760 0.96079 1.17612 0.83952 0.97854 0.98040 1.91421 1.59642 1.80789 1.81175 1.20433 0.90943 1.02204 1.00384 1.20461 0.95891 0.96600 0.97317 0.92909 0.95076 0.94225 0.93287 0.90493 0.88368 0.89302 0.89512 0.93683 0.82209 0.81716 0.86468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.06 8.74 71.98 0.63 -5.44 16 2 C 0.07 3.27 1.90 -11.54 -0.02 3.25 16 3 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 4 C -0.52 -28.30 7.95 25.60 0.20 -28.10 16 5 H 0.05 2.82 6.23 -2.91 -0.02 2.81 16 6 C 0.01 0.74 5.30 84.66 0.45 1.19 16 7 N -0.92 -53.93 11.32 21.45 0.24 -53.69 16 8 Si 0.94 44.90 29.54 68.60 2.03 46.93 16 9 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 10 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 11 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 12 C -0.05 -1.88 2.57 -10.72 -0.03 -1.91 16 13 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 14 C 0.05 1.62 6.28 86.65 0.54 2.17 16 15 N -0.49 -15.29 5.31 -713.35 -3.79 -19.08 16 16 C 0.02 0.35 9.16 127.69 1.17 1.52 16 17 C 0.08 2.57 5.96 38.24 0.23 2.80 16 18 C -0.11 -3.14 9.53 22.47 0.21 -2.93 16 19 C -0.13 -3.53 10.00 22.25 0.22 -3.31 16 20 C 0.05 1.59 7.31 22.39 0.16 1.75 16 21 F -0.15 -5.30 17.27 44.97 0.78 -4.52 16 22 C -0.12 -4.77 9.37 22.26 0.21 -4.56 16 23 C -0.10 -3.93 5.24 -19.49 -0.10 -4.04 16 24 H 0.05 2.81 6.07 -2.39 -0.01 2.80 16 25 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.04 1.58 6.14 -2.38 -0.01 1.57 16 27 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 28 H 0.08 2.00 7.84 -2.38 -0.02 1.98 16 29 H 0.10 3.15 5.85 -2.39 -0.01 3.14 16 30 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.09 1.53 7.32 -2.38 -0.02 1.52 16 32 H 0.04 0.86 8.09 -2.39 -0.02 0.84 16 33 H 0.16 3.21 7.38 -2.91 -0.02 3.19 16 34 H 0.17 3.43 8.06 -2.91 -0.02 3.40 16 35 H 0.12 4.88 7.00 -2.91 -0.02 4.86 16 Total: -1.00 -63.96 284.91 4.23 -59.74 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: 1.09 Total: 8.21 kcal Atomic # 6 Polarization: -41.47 SS G_CDS: 3.88 Total: -37.59 kcal Atomic # 7 Polarization: -69.22 SS G_CDS: -3.55 Total: -72.76 kcal Atomic # 9 Polarization: -5.30 SS G_CDS: 0.78 Total: -4.52 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -63.96 4.23 -59.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261076020.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.589 kcal (2) G-P(sol) polarization free energy of solvation -63.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds