Wall clock time and date at job start Mon Mar 30 2020 06:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47183 * 2 1 4 4 C 1.50705 * 109.47100 * 240.00311 * 2 1 3 5 5 H 1.07992 * 120.00219 * 270.26574 * 4 2 1 6 6 C 1.37877 * 119.99553 * 90.53680 * 4 2 1 7 7 N 1.31522 * 119.99684 * 184.54451 * 6 4 2 8 8 Si 1.86796 * 120.00344 * 4.54608 * 6 4 2 9 9 H 1.48499 * 109.47161 * 91.96866 * 8 6 4 10 10 H 1.48497 * 109.47266 * 211.96863 * 8 6 4 11 11 H 1.48502 * 109.47000 * 331.96896 * 8 6 4 12 12 C 1.53006 * 109.47167 * 120.00631 * 2 1 3 13 13 H 1.08998 * 110.65893 * 61.61431 * 12 2 1 14 14 C 1.54593 * 110.73569 * 298.42488 * 12 2 1 15 15 N 1.48394 * 102.40523 * 267.22692 * 14 12 2 16 16 C 1.46901 * 111.00880 * 94.64128 * 15 14 12 17 17 C 1.40202 * 107.91415 * 332.80248 * 15 14 12 18 18 C 1.39369 * 129.92103 * 198.02616 * 17 15 14 19 19 C 1.37923 * 120.23671 * 180.36439 * 18 17 15 20 20 C 1.38484 * 120.22856 * 359.97438 * 19 18 17 21 21 F 1.35103 * 120.07918 * 179.90933 * 20 19 18 22 22 C 1.38472 * 119.83829 * 359.88826 * 20 19 18 23 23 C 1.37941 * 120.05814 * 0.02562 * 22 20 19 24 24 H 1.08994 * 109.47119 * 186.67086 * 1 2 3 25 25 H 1.08998 * 109.46983 * 306.67245 * 1 2 3 26 26 H 1.08995 * 109.47284 * 66.66929 * 1 2 3 27 27 H 0.97000 * 120.00152 * 179.97438 * 7 6 4 28 28 H 1.09003 * 110.78226 * 25.57101 * 14 12 2 29 29 H 1.08998 * 110.77750 * 149.00327 * 14 12 2 30 30 H 1.08999 * 109.47296 * 293.27622 * 16 15 14 31 31 H 1.09003 * 109.46834 * 53.27458 * 16 15 14 32 32 H 1.08998 * 109.46885 * 173.27385 * 16 15 14 33 33 H 1.08005 * 119.88420 * 0.33370 * 18 17 15 34 34 H 1.08000 * 119.88479 * 179.97438 * 19 18 17 35 35 H 1.07994 * 119.97453 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.2083 -1.7756 -1.2052 6 6 2.2727 0.0007 -2.3871 7 7 2.6250 -0.6305 -3.4859 8 14 2.0980 1.8605 -2.3935 9 1 3.4105 2.4820 -2.0834 10 1 1.6415 2.3102 -3.7332 11 1 1.1030 2.2677 -1.3691 12 6 2.0401 -0.7214 1.2492 13 1 1.7111 -1.7606 1.2544 14 6 1.5737 0.0069 2.5306 15 7 2.7108 0.9181 2.8112 16 6 2.4736 2.2488 2.2358 17 6 3.8699 0.3387 2.2760 18 6 5.2105 0.6049 2.5486 19 6 6.2042 -0.0897 1.8909 20 6 5.8766 -1.0569 0.9555 21 9 6.8524 -1.7342 0.3117 22 6 4.5467 -1.3284 0.6819 23 6 3.5508 -0.6365 1.3394 24 1 -0.3633 -1.0207 0.1194 25 1 -0.3633 0.6138 0.8242 26 1 -0.3633 0.4070 -0.9436 27 1 2.7937 -0.1303 -4.2997 28 1 0.6596 0.5707 2.3441 29 1 1.4330 -0.7005 3.3479 30 1 2.4728 2.1795 1.1480 31 1 1.5091 2.6253 2.5766 32 1 3.2629 2.9290 2.5560 33 1 5.4723 1.3581 3.2770 34 1 7.2412 0.1214 2.1062 35 1 4.2888 -2.0819 -0.0475 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261076024.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:13 Heat of formation + Delta-G solvation = -8.212319 kcal Electronic energy + Delta-G solvation = -18806.462915 eV Core-core repulsion = 15911.936488 eV Total energy + Delta-G solvation = -2894.526427 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.37324 -40.53948 -36.37876 -34.46865 -31.98357 -30.64204 -29.12562 -28.04818 -25.55321 -24.92741 -22.91107 -21.41868 -20.69811 -19.22662 -17.14889 -16.66023 -16.10700 -15.98865 -15.19825 -14.90405 -14.24101 -14.03162 -13.66702 -13.19596 -12.93510 -12.76997 -12.63447 -12.41195 -12.27105 -11.78565 -11.57099 -11.41161 -11.14497 -11.08626 -10.78664 -10.68063 -10.10587 -9.72361 -9.66546 -9.22733 -8.75494 -8.55927 -8.38474 -7.44071 -6.12471 -4.10582 1.56647 1.73441 3.21999 3.30111 3.31869 3.89016 4.11172 4.36456 4.68612 5.04923 5.15205 5.25526 5.32895 5.46824 5.55406 5.61001 5.72168 5.86951 5.97409 6.03063 6.04295 6.24859 6.29552 6.34269 6.46274 6.58452 6.61626 6.72562 6.75963 6.87855 7.04783 7.14877 7.26928 7.34785 7.61063 7.70545 8.44903 8.90925 9.50736 11.00787 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.017352 B = 0.011405 C = 0.008624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.287177 B = 2454.515286 C = 3246.099605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.018 3.982 3 H 0.035 0.965 4 C -0.506 4.506 5 H 0.073 0.927 6 C 0.075 3.925 7 N -0.897 5.897 8 Si 0.865 3.135 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.262 1.262 12 C -0.065 4.065 13 H 0.084 0.916 14 C 0.042 3.958 15 N -0.492 5.492 16 C 0.020 3.980 17 C 0.064 3.936 18 C -0.093 4.093 19 C -0.151 4.151 20 C 0.078 3.922 21 F -0.145 7.145 22 C -0.097 4.097 23 C -0.062 4.062 24 H 0.046 0.954 25 H 0.023 0.977 26 H 0.047 0.953 27 H 0.263 0.737 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.044 0.956 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.125 0.875 34 H 0.131 0.869 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.416 3.294 11.732 12.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.001 4.001 3 H 0.053 0.947 4 C -0.544 4.544 5 H 0.091 0.909 6 C -0.127 4.127 7 N -0.535 5.535 8 Si 0.693 3.307 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.187 1.187 12 C -0.084 4.084 13 H 0.103 0.897 14 C -0.084 4.084 15 N -0.210 5.210 16 C -0.126 4.126 17 C -0.032 4.032 18 C -0.113 4.113 19 C -0.171 4.171 20 C 0.058 3.942 21 F -0.124 7.124 22 C -0.116 4.116 23 C -0.065 4.065 24 H 0.065 0.935 25 H 0.042 0.958 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.106 0.894 29 H 0.099 0.901 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.143 0.857 34 H 0.149 0.851 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.503 3.417 12.067 12.632 hybrid contribution 0.102 0.798 -1.240 1.478 sum 1.605 4.214 10.827 11.729 Atomic orbital electron populations 1.22070 0.98592 0.99851 0.99120 1.19261 0.92212 0.95963 0.92679 0.94725 1.20860 1.43874 0.96241 0.93433 0.90854 1.24974 0.94525 0.97737 0.95464 1.69892 1.47184 1.35683 1.00747 0.87030 0.78937 0.87244 0.77515 1.20376 1.21400 1.18660 1.21503 0.89502 1.01334 0.96086 0.89740 1.23485 0.93059 0.95161 0.96714 1.60467 1.01360 1.03687 1.55487 1.22616 1.01845 0.89256 0.98913 1.19640 0.91456 0.97212 0.94912 1.20098 0.89585 1.00953 1.00702 1.20709 0.99910 0.97884 0.98568 1.17524 0.85272 0.95329 0.96042 1.91456 1.61617 1.78801 1.80484 1.20477 0.89630 1.01658 0.99851 1.20711 0.96051 0.96614 0.93091 0.93529 0.95822 0.93417 0.92685 0.89431 0.90081 0.93763 0.91117 0.91534 0.85684 0.85136 0.84244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 8.63 37.16 0.32 -2.40 16 2 C 0.02 0.38 1.36 -91.77 -0.12 0.26 16 3 H 0.03 0.79 2.90 -51.93 -0.15 0.64 16 4 C -0.51 -13.33 7.88 -34.44 -0.27 -13.60 16 5 H 0.07 2.10 8.06 -52.49 -0.42 1.68 16 6 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 7 N -0.90 -26.86 13.96 55.43 0.77 -26.09 16 8 Si 0.87 21.16 26.71 -169.99 -4.54 16.62 16 9 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 11 H -0.26 -6.00 6.49 56.52 0.37 -5.63 16 12 C -0.06 -1.23 2.55 -90.50 -0.23 -1.46 16 13 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 14 C 0.04 0.67 6.43 -2.16 -0.01 0.65 16 15 N -0.49 -8.02 5.34 -176.41 -0.94 -8.97 16 16 C 0.02 0.30 9.31 60.07 0.56 0.86 16 17 C 0.06 1.13 5.57 -83.35 -0.46 0.66 16 18 C -0.09 -1.47 10.07 -39.28 -0.40 -1.87 16 19 C -0.15 -2.40 10.00 -39.61 -0.40 -2.80 16 20 C 0.08 1.44 7.31 -39.40 -0.29 1.15 16 21 F -0.14 -2.70 17.27 2.25 0.04 -2.66 16 22 C -0.10 -1.95 9.46 -39.60 -0.37 -2.32 16 23 C -0.06 -1.21 5.23 -104.04 -0.54 -1.76 16 24 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 25 H 0.02 0.39 6.47 -51.93 -0.34 0.05 16 26 H 0.05 0.99 7.73 -51.93 -0.40 0.59 16 27 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.09 1.29 5.59 -51.93 -0.29 1.00 16 29 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.04 0.79 5.62 -51.93 -0.29 0.50 16 31 H 0.07 0.92 7.95 -51.93 -0.41 0.51 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.13 1.63 8.06 -52.48 -0.42 1.21 16 34 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 35 H 0.14 2.97 8.04 -52.49 -0.42 2.55 16 LS Contribution 282.58 15.07 4.26 4.26 Total: -1.00 -29.11 282.58 -7.17 -36.27 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -4.43 Total: 1.20 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: -2.32 Total: -20.63 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: -0.17 Total: -35.06 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.04 Total: -2.66 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.54 Total: 16.62 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.11 -7.17 -36.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261076024.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.060 kcal (2) G-P(sol) polarization free energy of solvation -29.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds